Ben Langmead - Publications, H-index & Citations

Ben Langmead

johns hopkins university

43H指数

220论文数

12.9W被引数

收录论文 43

发表时间

Partitioned multi-MUM finding for scalable pangenomics with MumemtoM 基于MumemtoM的可扩展泛基因组分区多唯一最大匹配查找

Genome Research

IF5.5

2026-02-01

PREAI

Shivakumar, Vikram S.; Langmead, Ben

KeBaB: k-mer Based Breaking for Finding Long MEMs KeBaB：基于k-mer的断裂方法用于寻找长最大匹配序列

STRING PROCESSING AND INFORMATION RETRIEVAL, SPIRE 2025

IF0

2026-01-01

PREAI

Brown, Nathaniel K.; Depuydt, Lore; Zakeri, Mohsen; Alhadi, Anas; Allam, Nour; Begleiter, Dove; Karpagavalli, Nithin Bharathi Kabilan; Khajjayam, Suchith Sridhar; Wahed, Hamza; Gagie, Travis; Langmead, Ben

Prefix-Free Parsing for Merging Big BWTs 无前缀解析用于合并大型BWT

STRING PROCESSING AND INFORMATION RETRIEVAL, SPIRE 2025

IF0

2026-01-01

PREAI

Diaz-Dominguez, Diego; Gagie, Travis; Guerrini, Veronica; Langmead, Ben; Liptak, Zsuzsanna; Manzini, Giovanni; Masillo, Francesco; Shivakumar, Vikram

Col-BWT: Pangenomic Seed Chaining with Maximal Matches Improves Read Classification Col-BWT：利用最大匹配的泛基因组种子链提高读序列分类效果

JOURNAL OF COMPUTATIONAL BIOLOGY

IF1.6

2025-12-01

PREAI

Brown, Nathaniel K.; Shivakumar, Vikram S.; Langmead, Ben

Metagenome analysis using the Kraken software suite (vol 17, pg 2815, 2022)使用Kraken软件套件进行宏基因组分析 (第17卷，2815页，2022页)

NATURE PROTOCOLS

IF16

2024-08-29

OAAI

Lu, Jennifer; Rincon, Natalia; Wood, Derrick E.; Breitwieser, Florian P.; Pockrandt, Christopher; Langmead, Ben; Salzberg, Steven L.; Steinegger, Martin

Centrifuger: lossless compression of microbial genomes for efficient and accurate metagenomic sequence classification 离心机: 无损压缩微生物基因组，实现高效准确的宏基因组序列分类

GENOME BIOLOGY

IF9.4

2024-04-25

OAAI

Song, Li; Langmead, Ben

Measuring, visualizing, and diagnosing reference bias with biastools

GENOME BIOLOGY

IF9.4

2024-04-19

OAAI

Lin, Mao-Jan; Iyer, Sheila; Chen, Nae-Chyun; Langmead, Ben

Efficient encoding of large antigenic spaces by epitope prioritization with Dolphyn

NATURE COMMUNICATIONS

IF15.7

2024-02-21

OAAI

Liebhoff, Anna-Maria; Venkataraman, Thiagarajan; Morgenlander, William R.; Na, Miso; Kula, Tomasz; Waugh, Kathleen; Morrison, Charles; Rewers, Marian; Longman, Randy; Round, June; Elledge, Stephen; Ruczinski, Ingo; Langmead, Ben; Larman, H. Benjamin

Improved sequence mapping using a complete reference genome and lift-over 使用完整的参考基因组和提升改进的序列作图

NATURE METHODS

IF32.1

2023-11-30

OAAI

Chen, Nae-Chyun; Paulin, Luis F.; Sedlazeck, Fritz J.; Koren, Sergey; Phillippy, Adam M.; Langmead, Ben

SPUMONI 2: improved classification using a pangenome index of minimizer digests SPUMONI 2: 使用最小化消化物的pangenome指数改进分类

GENOME BIOLOGY

IF9.4

2023-05-18

OAAI

Ahmed, Omar Y.; Rossi, Massimiliano; Gagie, Travis; Boucher, Christina; Langmead, Ben

REPAC: analysis of alternative polyadenylation from RNA-sequencing data

GENOME BIOLOGY

IF9.4

2023-02-09

OAAI

Imada, Eddie L.; Wilks, Christopher; Langmead, Ben; Marchionni, Luigi

Cell-specific regulation of gene expression using splicing-dependent frameshifting

NATURE COMMUNICATIONS

IF15.7

2022-10-01

OAAI

Ling, Jonathan P.; Bygrave, Alexei M.; Santiago, Clayton P.; Carmen-Orozco, Rogger P.; Trinh, Vickie T.; Yu, Minzhong; Li, Yini; Liu, Ying; Bowden, Kyra D.; Duncan, Leighton H.; Han, Jeong; Taneja, Kamil; Dongmo, Rochinelle; Babola, Travis A.; Parker, Patrick; Jiang, Lizhi; Leavey, Patrick J.; Smith, Jennifer J.; Vistein, Rachel; Gimmen, Megan Y.; Dubner, Benjamin; Helmenstine, Eric; Teodorescu, Patric; Karantanos, Theodoros; Ghiaur, Gabriel; Kanold, Patrick O.; Bergles, Dwight; Langmead, Ben; Sun, Shuying; Nielsen, Kristina J.; Peachey, Neal; Singh, Mandeep S.; Dalton, W. Brian; Rajaii, Fatemeh; Huganir, Richard L.; Blackshaw, Seth

Metagenome analysis using the Kraken software suite 使用Kraken软件套件进行宏基因组分析

NATURE PROTOCOLS

IF16

2022-09-28

189

OAAI

Lu, Jennifer; Rincon, Natalia; Wood, Derrick E.; Breitwieser, Florian P.; Pockrandt, Christopher; Langmead, Ben; Salzberg, Steven L.; Steinegger, Martin

recount3: summaries and queries for large-scale RNA-seq expression and splicing 回顾: 大规模rna-seq表达和剪接的总结和查询

GENOME BIOLOGY

IF9.4

2021-11-29

100

OAAI

Wilks, Christopher; Zheng, Shijie C.; Chen, Feng Yong; Charles, Rone; Solomon, Brad; Ling, Jonathan P.; Imada, Eddie Luidy; Zhang, David; Joseph, Lance; Leek, Jeffrey T.; Jaffe, Andrew E.; Nellore, Abhinav; Collado-Torres, Leonardo; Hansen, Kasper D.; Langmead, Ben

Reference flow: reducing reference bias using multiple population genomes

GENOME BIOLOGY

IF9.4

2021-01-04

OAAI

Chen, Nae-Chyun; Solomon, Brad; Mun, Taher; Iyer, Sheila; Langmead, Ben

Recounting the FANTOM CAGE-Associated Transcriptome

GENOME RESEARCH

IF5.5

2020-02-20

OAAI

Imada, Eddie Luidy; Sanchez, Diego Fernando; Collado-Torres, Leonardo; Wilks, Christopher; Matam, Tejasvi; Dinalankara, Wikum; Stupnikov, Aleksey; Lobo-Pereira, Francisco; Yip, Chi-Wai; Yasuzawa, Kayoko; Kondo, Naoto; Itoh, Masayoshi; Suzuki, Harukazu; Kasukawa, Takeya; Hon, Chung-Chau; Hoon, Michiel J. L. de; Shin, Jay W.; Carninci, Piero; Jaffe, Andrew E.; Leek, Jeffrey T.; Favorov, Alexander; Franco, Gloria R.; Langmead, Ben; Marchionni, Luigi

ASCOT identifies key regulators of neuronal subtype-specific splicing

NATURE COMMUNICATIONS

IF15.7

2020-01-09

OAAI

Ling, Jonathan P.; Wilks, Christopher; Charles, Rone; Leavey, Patrick J.; Ghosh, Devlina; Jiang, Lizhi; Santiago, Clayton P.; Pang, Bo; Venkataraman, Anand; Clark, Brian S.; Nellore, Abhinav; Langmead, Ben; Blackshaw, Seth

Dashing: fast and accurate genomic distances with HyperLogLog Dashing: 使用HyperLogLog快速准确的基因组距离

GENOME BIOLOGY

IF9.4

2019-12-04

OAAI

Baker, Daniel N.; Langmead, Ben

Improved metagenomic analysis with Kraken 2 使用Kraken 2改进宏基因组分析

GENOME BIOLOGY

IF9.4

2019-11-28

2.4K

OAAI