Abhinav Nellore - Publications, H-index & Citations

Abhinav Nellore

Oregon Health & Science University

27H指数

85论文数

5.3K被引数

收录论文 17

发表时间

Retained introns in long RNA-seq reads are not reliably detected in sample-matched short reads 在样品匹配的短读段中不能可靠地检测到长rna-seq读段中保留的内含子

GENOME BIOLOGY

IF9.4

2022-11-11

OAAI

David, Julianne K.; Maden, Sean K.; Wood, Mary A.; Thompson, Reid F.; Nellore, Abhinav

recount3: summaries and queries for large-scale RNA-seq expression and splicing 回顾: 大规模rna-seq表达和剪接的总结和查询

GENOME BIOLOGY

IF9.4

2021-11-29

100

OAAI

Wilks, Christopher; Zheng, Shijie C.; Chen, Feng Yong; Charles, Rone; Solomon, Brad; Ling, Jonathan P.; Imada, Eddie Luidy; Zhang, David; Joseph, Lance; Leek, Jeffrey T.; Jaffe, Andrew E.; Nellore, Abhinav; Collado-Torres, Leonardo; Hansen, Kasper D.; Langmead, Ben

Human methylome variation across Infinium 450K data on the Gene Expression Omnibus

genomics proteomics bioinformatics

IF2.8

2021-04-22

OAAI

Maden, Sean K.; Thompson, Reid F.; Hansen, Kasper D.; Nellore, Abhinav

Alternative splicing of MR1 regulates antigen presentation to MAIT cells

SCIENTIFIC REPORTS

IF3.9

2020-09-22

OAAI

Narayanan, Gitanjali A.; Nellore, Abhinav; Tran, Jessica; Worley, Aneta H.; Meermeier, Erin W.; Karamooz, Elham; Huber, Megan E.; Kurapova, Regina; Tafesse, Fikadu G.; Harriff, Melanie J.; Lewinsohn, David M.

Human Leukocyte Antigen Susceptibility Map for Severe Acute Respiratory Syndrome Coronavirus 2

JOURNAL OF VIROLOGY

IF3.8

2020-06-16

351

OAAI

Nguyen, Austin; David, Julianne K.; Maden, Sean K.; Wood, Mary A.; Weeder, Benjamin R.; Nellore, Abhinav; Thompson, Reid F.

Burden of tumor mutations, neoepitopes, and other variants are weak predictors of cancer immunotherapy response and overall survival 肿瘤突变，新表位和其他变异的负担是癌症免疫疗法反应和总生存率的弱预测指标

GENOME MEDICINE

IF11.2

2020-03-30

OAAI

Wood, Mary A.; Weeder, Benjamin R.; David, Julianne K.; Nellore, Abhinav; Thompson, Reid F.

Putatively cancer-specific exon-exon junctions are shared across patients and present in developmental and other non-cancer cells

NAR CANCER

IF3.2

2020-01-29

OAAI

David, Julianne K.; Maden, Sean K.; Weeder, Benjamin R.; Thompson, Reid F.; Nellore, Abhinav

ASCOT identifies key regulators of neuronal subtype-specific splicing

NATURE COMMUNICATIONS

IF15.7

2020-01-09

OAAI

Ling, Jonathan P.; Wilks, Christopher; Charles, Rone; Leavey, Patrick J.; Ghosh, Devlina; Jiang, Lizhi; Santiago, Clayton P.; Pang, Bo; Venkataraman, Anand; Clark, Brian S.; Nellore, Abhinav; Langmead, Ben; Blackshaw, Seth

Population-level distribution and putative immunogenicity of cancer neoepitopes 癌症新表位的群体水平分布和推定的免疫原性

BMC CANCER

IF3.4

2018-04-13

OAAI

Wood, Mary A.; Paralkar, Mayur; Paralkar, Mihir P.; Nguyen, Austin; Struck, Adam J.; Ellrott, Kyle; Margolin, Adam; Nellore, Abhinav; Thompson, Reid F.

Cloud computing for genomic data analysis and collaboration 用于基因组数据分析和协作的云计算

NATURE REVIEWS GENETICS

IF52

2018-01-30

131

OAAI

Langmead, Ben; Nellore, Abhinav

qSVA framework for RNA quality correction in differential expression analysis

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2017-06-20

OAAI

Jaffe, Andrew E.; Tao, Ran; Norris, Alexis L.; Kealhofer, Marc; Nellore, Abhinav; Shin, Joo Heon; Kim, Dewey; Jia, Yankai; Hyde, Thomas M.; Kleinman, Joel E.; Straub, Richard E.; Leek, Jeffrey T.; Weinberger, Daniel R.

Reproducible RNA-seq analysis using recount2

NATURE BIOTECHNOLOGY

IF41.7

2017-04-11

266

OAAI

Collado-Torres, Leonardo; Nellore, Abhinav; Kammers, Kai; Ellis, Shannon E.; Taub, Margaret A.; Hansen, Kasper D.; Jaffe, Andrew E.; Langmead, Ben; Leek, Jeffrey T.

Human splicing diversity and the extent of unannotated splice junctions across human RNA-seq samples on the Sequence Read Archive 序列读取档案中人类rna-seq样本的人类剪接多样性和未注释剪接点的程度

GENOME BIOLOGY

IF9.4

2016-12-30

OAAI

Nellore, Abhinav; Jaffe, Andrew E.; Fortin, Jean-Philippe; Alquicira-Hernandez, Jose; Collado-Torres, Leonardo; Wang, Siruo; Phillips, Robert A., III; Karbhari, Nishika; Hansen, Kasper D.; Langmead, Ben; Leek, Jeffrey T.

Flexible expressed region analysis for RNA-seq with derfinder

NUCLEIC ACIDS RESEARCH

IF13.1

2016-09-29

OAAI

Collado-Torres, Leonardo; Nellore, Abhinav; Frazee, Alyssa C.; Wilks, Christopher; Love, Michael I.; Langmead, Ben; Irizarry, Rafael A.; Leek, Jeffrey T.; Jaffe, Andrew E.

Integration of Genome-wide Approaches Identifies lncRNAs of Adult Neural Stem Cells and Their Progeny In Vivo

CELL STEM CELL

IF20.4

2013-05-01

234

OAAI

Ramos, Alexander D.; Diaz, Aaron; Nellore, Abhinav; Delgado, Ryan N.; Park, Ki-Youb; Gonzales-Roybal, Gabriel; Oldham, Michael C.; Song, Jun S.; Lim, Daniel A.

CHANCE: comprehensive software for quality control and validation of ChIP-seq data

GENOME BIOLOGY

IF9.4

2012-10-15

OAAI

Diaz, Aaron; Nellore, Abhinav; Song, Jun S.

Low-temperature behavior of the Abelian Higgs model in Anti-de Sitter space

JOURNAL OF HIGH ENERGY PHYSICS

IF5.5

2009-04-02

OAAI

Gubser, Steven S.; Nellore, Abhinav

研究方向