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R

Rob Patro

university of maryland

36H指数
186论文数
2.0W被引数
收录论文 20
发表时间
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QCatch: A framework for quality control assessment and analysis of single-cell sequencing dataQCatch：单细胞测序数据质量控制评估与分析框架
errBioinformatics
IF5.4
err2026-04-15
err0
errOAAI
errYuan Gao; Dongze He; Rob Patro; null; null
err分享
err收藏
Tree-based differential testing using inferential uncertainty for RNA-seq基于推断不确定性的树结构差异测试用于RNA-seq
errGENOME RESEARCH
IF5.5
err2025-10-01
err0
errOAAI
errSingh, Noor Pratap; Wu, Euphy Y.; Fan, Jason; Love, Michael I.; Patro, Rob
err分享
err收藏
Alevin-fry-atac enables rapid and memory frugal mapping of single-cell ATAC-seq data using virtual colors for accurate genomic pseudoalignmentAlevin-fry-atac能够利用虚拟颜色对单细胞ATAC-seq数据进行快速且内存高效的映射，以实现精确的基因组伪比对。
errBIOINFORMATICS
IF5.4
err2025-07-01
err0
errOAAI
errSingh, Noor Pratap; Khan, Jamshed; Patro, Rob
err分享
err收藏
Oarfish: enhanced probabilistic modeling leads to improved accuracy in long read transcriptome quantification海龙鱼：增强的概率建模提高了长读长转录组定量分析的准确性
errBIOINFORMATICS
IF5.4
err2025-07-01
err3
errOAAI
errJousheghani, Zahra Zare; Singh, Noor Pratap; Patro, Rob
err分享
err收藏
Identification of intracellular bacteria from multiple single-cell RNA-seq platforms using CSI-Microbes使用CSI微生物从多个单细胞rna-seq平台鉴定细胞内细菌
errSCIENCE ADVANCES
IF12.5
err2024-07-05
err2
errOAAI
errRobinson, Welles; Stone, Joshua K.; Schischlik, Fiorella; Gasmi, Billel; Kelly, Michael C.; Seibert, Charlie; Dadkhah, Kimia; Gertz, E. Michael; Lee, Joo Sang; Zhu, Kaiyuan; Ma, Lichun; Wang, Xin Wei; Sahinalp, S. Cenk; Patro, Rob; Leiserson, Mark D. M.; Harris, Curtis C.; Schaffer, Alejandro A.; Ruppin, Eytan
err分享
err收藏
SEESAW: detecting isoform-level allelic imbalance accounting for inferential uncertainty
errGENOME BIOLOGY
IF9.4
err2023-07-12
err2
errOAAI
errWu, Euphy Y. Y.; Singh, Noor P. P.; Choi, Kwangbom; Zakeri, Mohsen; Vincent, Matthew; Churchill, Gary A. A.; Ackert-Bicknell, Cheryl L. L.; Patro, Rob; Love, Michael I. I.
err分享
err收藏
Novel expression biomarkers via prediction of response to FOLFIRINOX (FFX) treatment for PDAC
errCANCER RESEARCH
IF16.6
err2023-04-04
err1
PREAI
errAsghari, Hossein; Haghshenas, Ehsan; Thomas, Roby; Schultz, Eric; Patro, Rob; Skrzypczak, Stan; Kingsford, Carl
err分享
err收藏
Scalable, ultra-fast, and low-memory construction of compacted de Bruijn graphs with Cuttlefish 2
errGENOME BIOLOGY
IF9.4
err2022-09-08
err16
errOAAI
errKhan, Jamshed; Kokot, Marek; Deorowicz, Sebastian; Patro, Rob
err分享
err收藏
Alevin-fry unlocks rapid, accurate and memory-frugal quantification of single-cell RNA-seq data
errNATURE METHODS
IF32.1
err2022-03-11
err36
errOAAI
errHe, Dongze; Zakeri, Mohsen; Sarkar, Hirak; Soneson, Charlotte; Srivastava, Avi; Patro, Rob
err分享
err收藏
AGAMEMNON: an Accurate metaGenomics And MEtatranscriptoMics quaNtificatiON analysis suiteAGAMEMNON: 一个精确的宏基因组学和元基因组学量化分析套件
errGENOME BIOLOGY
IF9.4
err2022-01-31
err5
errOAAI
errSkoufos, Giorgos; Almodaresi, Fatemeh; Zakeri, Mohsen; Paulson, Joseph N.; Patro, Rob; Hatzigeorgiou, Artemis G.; Vlachos, Ioannis S.
err分享
err收藏
Preprocessing choices affect RNA velocity results for droplet scRNA-seq data
errplos biology
IF3.6
err2021-01-11
err29
errOAAI
errSoneson, Charlotte; Srivastava, Avi; Patro, Rob; Stadler, Michael B.
err分享
err收藏
Alignment and mapping methodology influence transcript abundance estimation
errGENOME BIOLOGY
IF9.4
err2020-09-07
err74
errOAAI
errSrivastava, Avi; Malik, Laraib; Sarkar, Hirak; Zakeri, Mohsen; Almodaresi, Fatemeh; Soneson, Charlotte; Love, Michael I.; Kingsford, Carl; Patro, Rob
err分享
err收藏
Rich Chromatin Structure Prediction from Hi-C Data从hi-c数据预测丰富的染色质结构
errIEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS
IF3.4
err2019-09-01
err16
errOAAI
errMalik, Laraib; Patro, Rob
err分享
err收藏
Nonparametric expression analysis using inferential replicate counts使用推断重复计数的非参数表达式分析
errNUCLEIC ACIDS RESEARCH
IF13.1
err2019-08-02
err54
errOAAI
errZhu, Anqi; Srivastava, Avi; Ibrahim, Joseph G.; Patro, Rob; Love, Michael, I
err分享
err收藏
Alevin efficiently estimates accurate gene abundances from dscRNA-seq data
errGENOME BIOLOGY
IF9.4
err2019-03-27
err150
errOAAI
errSrivastava, Avi; Malik, Laraib; Smith, Tom; Sudbery, Ian; Patro, Rob
err分享
err收藏
A junction coverage compatibility score to quantify the reliability of transcript abundance estimates and annotation catalogs
errLIFE SCIENCE ALLIANCE
IF2.9
err2019-01-17
err13
errOAAI
errSoneson, Charlotte; Love, Michael I.; Patro, Rob; Hussain, Shobbir; Malhotra, Dheeraj; Robinson, Mark D.
err分享
err收藏
Mantis: A Fast, Small, and Exact Large-Scale Sequence-Search Index
errCELL SYSTEMS
IF7.7
err2018-08-01
err67
errOAAI
errPandey, Prashant; Almodaresi, Fatemeh; Bender, Michael A.; Ferdman, Michael; Johnson, Rob; Patro, Rob
err分享
err收藏
Salmon provides fast and bias-aware quantification of transcript expression鲑鱼提供了转录本表达的快速和偏见意识量化
errNATURE METHODS
IF32.1
err2017-03-06
err6.2K
errOAAI
errPatro, Rob; Duggal, Geet; Love, Michael I.; Irizarry, Rafael A.; Kingsford, Carl
err分享
err收藏
TransRate: reference-free quality assessment of de novo transcriptome assemblies
errGENOME RESEARCH
IF5.5
err2016-06-01
err570
errOAAI
errSmith-Unna, Richard; Boursnell, Chris; Patro, Rob; Hibberd, Julian M.; Kelly, Steven
err分享
err收藏
Sailfish enables alignment-free isoform quantification from RNA-seq reads using lightweight algorithmsSailfish使用轻量级算法从rna-seq读数实现无比对同工型定量
errNATURE BIOTECHNOLOGY
IF41.7
err2014-04-20
err506
errOAAI
errPatro, Rob; Mount, Stephen M.; Kingsford, Carl
err分享
err收藏

研究方向

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H 指数: 92 · 论文数: 516
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