Thomas C. Terwilliger - Publications, H-index & Citations

Thomas C. Terwilliger

New Mexico Consortium

73H指数

352论文数

8.4W被引数

收录论文 40

发表时间

AlphaFold as a prior: experimental structure determination conditioned on a pretrained neural network AlphaFold作为先验: 以预训练的神经网络为条件的实验结构确定

Nature Methods

IF32.1

2026-04-01

PREAI

Alisia Fadini; Minhuan Li; Airlie J. McCoy; Suresh Banjara; Hiroki Okumura; Eve Napier; Pietro Fontana; Amir R. Khan; Luca Jovine; Thomas C. Terwilliger; Randy J. Read; Doeke R. Hekstra; Mohammed AlQuraishi

AlphaFold predictions are valuable hypotheses and accelerate but do not replace experimental structure determination AlphaFold预测是有价值的假设，可以加速但不能替代实验结构确定

NATURE METHODS

IF32.1

2023-11-30

OAAI

Terwilliger, Thomas C.; Liebschner, Dorothee; Croll, Tristan I.; Williams, Christopher J.; McCoy, Airlie J.; Poon, Billy K.; Afonine, Pavel V.; Oeffner, Robert D.; Richardson, Jane S.; Read, Randy J.; Adams, Paul D.

Crystal structures of multidrug efflux transporters from Burkholderia pseudomallei suggest details of transport mechanism

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2023-07-10

OAAI

Kato, Takaaki; Okada, Ui; Hung, Li-Wei; Yamashita, Eiki; Kim, Heung-Bok; Kim, Chang-Yub; Terwilliger, Thomas C.; Schweizer, Herbert P.; Murakami, Satoshi

Improved AlphaFold modeling with implicit experimental information 具有隐式实验信息的改进AlphaFold建模

NATURE METHODS

IF32.1

2022-10-20

OAAI

Terwilliger, Thomas C.; Poon, Billy K.; Afonine, Pavel, V; Schlicksup, Christopher J.; Croll, Tristan, I; Millan, Claudia; Richardson, Jane S.; Read, Randy J.; Adams, Paul D.

A monomeric mycobacteriophage immunity repressor utilizes two domains to recognize an asymmetric DNA sequence

NATURE COMMUNICATIONS

IF15.7

2022-07-14

OAAI

McGinnis, Reliza J.; Brambley, Chad A.; Stamey, Brandon; Green, William C.; Gragg, Kimberly N.; Cafferty, Erin R.; Terwilliger, Thomas C.; Hammel, Michal; Hollis, Thomas J.; Miller, Justin M.; Gainey, Maria D.; Wallen, Jamie R.

Engineering an efficient and bright split Corynactis californica green fluorescent protein

SCIENTIFIC REPORTS

IF3.9

2021-09-16

OAAI

Nguyen, Hau B.; Terwilliger, Thomas C.; Waldo, Geoffrey S.

Cryo-EM model validation recommendations based on outcomes of the 2019 EMDataResource challenge

NATURE METHODS

IF32.1

2021-02-04

OAAI

Lawson, Catherine L.; Kryshtafovych, Andriy; Adams, Paul D.; Afonine, Pavel, V; Baker, Matthew L.; Barad, Benjamin A.; Bond, Paul; Burnley, Tom; Cao, Renzhi; Cheng, Jianlin; Chojnowski, Grzegorz; Cowtan, Kevin; Dill, Ken A.; DiMaio, Frank; Farrell, Daniel P.; Fraser, James S.; Herzik, Mark A., Jr.; Hoh, Soon Wen; Hou, Jie; Hung, Li-Wei; Igaev, Maxim; Joseph, Agnel P.; Kihara, Daisuke; Kumar, Dilip; Mittal, Sumit; Monastyrskyy, Bohdan; Olek, Mateusz; Palmer, Colin M.; Patwardhan, Ardan; Perez, Alberto; Pfab, Jonas; Pintilie, Grigore D.; Richardson, Jane S.; Rosenthal, Peter B.; Sarkar, Daipayan; Schafer, Luisa U.; Schmid, Michael F.; Schroder, Gunnar F.; Shekhar, Mrinal; Si, Dong; Singharoy, Abishek; Terashi, Genki; Terwilliger, Thomas C.; Vaiana, Andrea; Wang, Liguo; Wang, Zhe; Wankowicz, Stephanie A.; Williams, Christopher J.; Winn, Martyn; Wu, Tianqi; Yu, Xiaodi; Zhang, Kaiming; Berman, Helen M.; Chiu, Wah

A genome-wide structure-based survey of nucleotide binding proteins in M. tuberculosis (vol 7, 12489, 2017)

SCIENTIFIC REPORTS

IF3.9

2020-11-19

OAAI

Bhagavat, Raghu; Kim, Heung-Bok; Kim, Chang-Yub; Terwilliger, Thomas C.; Mehta, Dolly; Srinivasan, Narayanaswamy; Chandra, Nagasuma

Improvement of cryo-EM maps by density modification

NATURE METHODS

IF32.1

2020-08-17

151

OAAI

Terwilliger, Thomas C.; Ludtke, Steven J.; Read, Randy J.; Adams, Paul D.; Afonine, Pavel, V

Bottom-up structural proteomics: cryoEM of protein complexes enriched from the cellular milieu

NATURE METHODS

IF32.1

2019-11-25

OAAI

Ho, Chi-Min; Li, Xiaorun; Lai, Mason; Terwilliger, Thomas C.; Beck, Josh R.; Wohlschlegel, James; Goldberg, Daniel E.; Fitzpatrick, Anthony W. P.; Zhou, Z. Hong

Map segmentation, automated model-building and their application to the Cryo-EM Model Challenge

JOURNAL OF STRUCTURAL BIOLOGY

IF5.1

2018-11-01

OAAI

Terwilliger, Thomas C.; Adams, Paul D.; Afonine, Pavel V.; Sobolev, Oleg V.

A fully automatic method yielding initial models from high-resolution cryo-electron microscopy maps

NATURE METHODS

IF32.1

2018-10-30

108

OAAI

Terwilliger, Thomas C.; Adams, Paul D.; Afonine, Pavel V.; Sobolev, Oleg V.

A genome-wide structure-based survey of nucleotide binding proteins in M. tuberculosis 结核分枝杆菌核苷酸结合蛋白的全基因组结构调查

SCIENTIFIC REPORTS

IF3.9

2017-10-02

OAAI

Bhagavat, Raghu; Kim, Heung-Bok; Kim, Chang-Yub; Terwilliger, Thomas C.; Mehta, Dolly; Srinivasan, Narayanaswamy; Chandra, Nagasuma

X-ray structure determination using low-resolution electron microscopy maps for molecular replacement

NATURE PROTOCOLS

IF16

2015-07-30

OAAI

Jackson, Ryan N.; McCoy, Airlie J.; Terwilliger, Thomas C.; Read, Randy J.; Wiedenheft, Blake

Macromolecular X-ray structure determination using weak, single-wavelength anomalous data

NATURE METHODS

IF32.1

2014-12-22

OAAI

Bunkoczi, Gabor; Mccoy, Airlie J.; Echols, Nathaniel; Grosse-Kunstleve, Ralf W.; Adams, Paul D.; Holton, James M.; Read, Randy J.; Terwilliger, Thomas C.

Conformational dynamics of a crystalline protein from microsecond-scale molecular dynamics simulations and diffuse X-ray scattering 微秒级分子动力学模拟和扩散x射线散射的结晶蛋白的构象动力学

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2014-12-01

OAAI

Wall, Michael E.; Van Benschoten, Andrew H.; Sauter, Nicholas K.; Adams, Paul D.; Fraser, James S.; Terwilliger, Thomas C.

Diffuse X-Ray Scattering for Ensemble Modeling of Crystalline Proteins

BIOPHYSICAL JOURNAL

IF3.1

2014-01-01

OAAI

Wall, Michael E.; Terwilliger, Thomas C.; Fraser, James S.; Adams, Paul D.; Sauter, Nicholas K.; VanBenschoten, Andrew

Combining Crystallographic and Structure-Modeling Approaches in Macromolecular Crystallography

BIOPHYSICAL JOURNAL

IF3.1

2014-01-01

OAAI

Terwilliger, Thomas C.; DiMaio, Frank; Read, Randy J.; Baker, David; Brunger, Axel T.; Adams, Paul D.; Afonine, Pavel V.; Hung, Li-Wei

Crystal structure of Bacillus subtilis GabR, an autorepressor and transcriptional activator of gabT

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2013-10-14

OAAI

Edayathumangalam, Raji; Wu, Rui; Garcia, Roman; Wang, Yuguang; Wang, Wei; Kreinbring, Cheryl A.; Bach, Alicia; Liao, Jingling; Stone, Todd A.; Terwilliger, Thomas C.; Hoang, Quyen Q.; Belitsky, Boris R.; Petsko, Gregory A.; Ringe, Dagmar; Liu, Dali

A New Protein-Protein Interaction Sensor Based on Tripartite Split-GFP Association

SCIENTIFIC REPORTS

IF3.9

2013-10-04

235

OAAI

Cabantous, Stephanie; Nguyen, Hau B.; Pedelacq, Jean-Denis; Koraichi, Faten; Chaudhary, Anu; Ganguly, Kumkum; Lockard, Meghan A.; Favre, Gilles; Terwilliger, Thomas C.; Waldo, Geoffrey S.

研究方向