Sergey Koren - Publications, H-index & Citations

Sergey Koren

national institutes of health

87H指数

316论文数

7.3W被引数

收录论文 76

发表时间

Phased T2T horse and donkey assemblies from a mule reveal peculiar equid centromere evolution 阶段性T2T马和驴的组装来自骡子，揭示了独特的马科动物着丝粒演化

Cell Genomics

IF9

2026-08-06

OAAI

Kai Li; Eleonora Cappelletti; Carey Dessaix; Julia Ciosek; Emily Robyn; Lauren Johnson; Nahla Hussien AbouEl Ela; Xiomara Arias; David L. Adelson; Terje Raudsepp; Francesca M. Piras; Melissa L. Smith; Elizabeth Hudson; Brandon D. Pickett; Sergey Koren; Brian P. Walenz; Shelise Y. Brooks; Christina Sison; Juyun Crawford; Gerard Bouffard

Finishing a complete giraffe genome from telomere to telomere with Verkko-Fillet 使用Verkko-Fillet从端粒到端粒完成完整的斑马基因组组装

Cell Genomics

IF9

2026-08-06

OAAI

Juhyun Kim; Benjamin D. Rosen; Sarah E. Fumagalli; Kristen L. Kuhn; Amy Long; Jeffrey J. Schoenebeck; Heather Schwartz; Lan Wu-Cavener; Aleksey V. Zimin; Douglas R. Cavener; Timothy P.L. Smith; Adam M. Phillippy; Sergey Koren; Arang Rhie

Reference-guided assembly of metagenomes with MetaCompass 参考引导的元基因组组装工具MetaCompass

Cell Reports Methods

IF4.5

2025-09-26

OAAI

Tu Luan; Victoria P. Cepeda-Espinoza; Bo Liu; Zac Bowen; Ujjwal Ayyangar; Mathieu Almeida; Sergey Koren; Todd J. Treangen; Adam Porter; Mihai Pop

The formation and propagation of human Robertsonian chromosomes 人类罗伯逊染色体的形成与传播

Nature

IF48.5

2025-09-24

OAAI

Leonardo Gomes de Lima; Andrea Guarracino; Sergey Koren; Tamara Potapova; Sean McKinney; Arang Rhie; Steven J. Solar; Chris Seidel; Brandon L. Fagen; Brian P. Walenz; Gerard G. Bouffard; Shelise Y. Brooks; Michael Peterson; Kate Hall; Juyun Crawford; Alice C. Young; Brandon D. Pickett; Erik Garrison; Adam M. Phillippy; Jennifer L. Gerton

Analysis of a Novel Human Protein, ORF3, Encoded by Spacer rDNA 一种新型人类蛋白质ORF3的分析，该蛋白质由Spacer rDNA编码

JOURNAL OF MOLECULAR EVOLUTION

IF0

2025-09-01

OAAI

Chen, Yaohui; Kim, Jung-Hyun; Lee, Hee-Sheung; Koren, Sergey; Larionov, Vladimir; Phillippy, Adam M.; Schlessinger, David; Nagaraja, Ramaiah

Author Correction: Complex genetic variation in nearly complete human genomes 作者更正：近完整人类基因组中的复杂遗传变异

Nature

IF48.5

2025-08-26

OAAI

Glennis A. Logsdon; Peter Ebert; Peter A. Audano; Mark Loftus; David Porubsky; Jana Ebler; Feyza Yilmaz; Pille Hallast; Timofey Prodanov; DongAhn Yoo; Carolyn A. Paisie; William T. Harvey; Xuefang Zhao; Gianni V. Martino; Mir Henglin; Katherine M. Munson; Keon Rabbani; Chen-Shan Chin; Bida Gu; Hufsah Ashraf; Stephan Scholz; Olanrewaju Austine-Orimoloye; Parithi Balachandran; Marc Jan Bonder; Haoyu Cheng; Zechen Chong; Jonathan Crabtree; Mark Gerstein; Lisbeth A. Guethlein; Patrick Hasenfeld; Glenn Hickey; Kendra Hoekzema; Sarah E. Hunt; Matthew Jensen; Yunzhe Jiang; Sergey Koren; Youngjun Kwon; Chong Li; Heng Li; Jiaqi Li; Paul J. Norman; Keisuke K. Oshima; Benedict Paten; Adam M. Phillippy; Nicholas R. Pollock; Tobias Rausch; Mikko Rautiainen; Yuwei Song; Arda Söylev; Arvis Sulovari; Likhitha Surapaneni; Vasiliki Tsapalou; Weichen Zhou; Ying Zhou; Qihui Zhu; Michael C. Zody; Ryan E. Mills; Scott E. Devine; Xinghua Shi; Michael E. Talkowski; Mark J. P. Chaisson; Alexander T. Dilthey; Miriam K. Konkel; Jan O. Korbel; Charles Lee; Christine R. Beck; Evan E. Eichler; Tobias Marschall

Complex genetic variation in nearly complete human genomes 几乎完整的人类基因组中的复杂遗传变异

Nature

IF48.5

2025-07-23

OAAI

Gapless assembly of complete human and plant chromosomes using only nanopore sequencing 仅使用纳米孔测序的完整人类和植物染色体的无间隙组装

GENOME RESEARCH

IF5.5

2024-11-06

OAAI

Koren, Sergey; Bao, Zhigui; Guarracino, Andrea; Ou, Shujun; Goodwin, Sara; Jenike, Katharine M.; Lucas, Julian; Mcnulty, Brandy; Park, Jimin; Rautiainen, Mikko; Rhie, Arang; Roelofs, Dick; Schneiders, Harrie; Vrijenhoek, Ilse; Nijbroek, Koen; Nordesjo, Olle; Nurk, Sergey; Vella, Mike; Lawrence, Katherine R.; Ware, Doreen; Schatz, Michael C.; Garrison, Erik; Huang, Sanwen; Mccombie, William Richard; Miga, Karen H.; Wittenberg, Alexander H. J.; Phillippy, Adam M.

Graphasing: phasing diploid genome assembly graphs with single-cell strand sequencing 制图: 通过单细胞链测序对二倍体基因组组装图进行定相

GENOME BIOLOGY

IF9.4

2024-10-10

OAAI

Henglin, Mir; Ghareghani, Maryam; Harvey, William T.; Porubsky, David; Koren, Sergey; Eichler, Evan E.; Ebert, Peter; Marschall, Tobias

Telomere-to-telomere assemblies of cattle and sheep Y-chromosomes uncover divergent structure and gene content 牛和羊Y染色体的端粒到端粒组装揭示了不同的结构和基因含量

NATURE COMMUNICATIONS

IF15.7

2024-09-27

OAAI

Olagunju, Temitayo A.; Rosen, Benjamin D.; Neibergs, Holly L.; Becker, Gabrielle M.; Davenport, Kimberly M.; Elsik, Christine G.; Hadfield, Tracy S.; Koren, Sergey; Kuhn, Kristen L.; Rhie, Arang; Shira, Katie A.; Skibiel, Amy L.; Stegemiller, Morgan R.; Thorne, Jacob W.; Villamediana, Patricia; Cockett, Noelle E.; Murdoch, Brenda M.; Smith, Timothy P. L.

The Ruminant Telomere-to-Telomere (RT2T) Consortium 反刍动物端粒到端粒（RT2T）联盟

NATURE GENETICS

IF31.8

2024-08-05

PREAI

Kalbfleisch, Theodore S.; McKay, Stephanie D.; Murdoch, Brenda M.; Adelson, David L.; Almansa-Villa, Diego; Becker, Gabrielle; Beckett, Linda M.; Benitez-Galeano, Maria Jose; Biase, Fernando; Casey, Theresa; Chuong, Edward; Clark, Emily; Clarke, Shannon; Cockett, Noelle; Couldrey, Christine; Davis, Brian W.; Elsik, Christine G.; Faraut, Thomas; Gao, Yahui; Genet, Carine; Grady, Patrick; Green, Jonathan; Green, Richard; Guan, Dailu; Hagen, Darren; Hartley, Gabrielle A.; Heaton, Mike; Hoyt, Savannah J.; Huang, Wen; Jarvis, Erich; Kalleberg, Jenna; Khatib, Hasan; Koepfi, Klaus-Peter; Koltes, James; Koren, Sergey; Kuehn, Christa; Leeb, Tosso; Leonard, Alexander; Liu, George E.; Low, Wai Yee; Mcconnell, Hunter; Mcrae, Kathryn; Miga, Karen; Mousel, Michelle; Neibergs, Holly; Olagunju, Temitayo; Pennell, Matt; Petry, Bruna; Pewsner, Mirjam; Phillippy, Adam M.; Pickett, Brandon D.; Pineda, Paulene; Potapova, Tamara; Rachagani, Satyanarayana; Rhie, Arang; Rijnkels, Monique; Robic, Annie; Rodriguez Osorio, Nelida; Safonova, Yana; Schettini, Gustavo; Schnabel, Robert D.; Sirpu Natesh, Nagabhishek; Stegemiller, Morgan; Storer, Jessica; Stothard, Paul; Stull, Caleb; Tosser-Klopp, Gwenola; Traglia, German M.; Tuggle, Christopher K.; Van Tassell, Curtis P.; Watson, Corey; Weikard, Rosemarie; Wimmers, Klaus; Xie, Shangqian; Yang, Liu; Smith, Timothy P. L.; O'Neill, Rachel J.; Rosen, Benjamin D.

Scalable telomere-to-telomere assembly for diploid and polyploid genomes with double graph 具有双图的二倍体和多倍体基因组的可扩展端粒到端粒组装

NATURE METHODS

IF32.1

2024-05-10

PREAI

Cheng, Haoyu; Asri, Mobin; Lucas, Julian; Koren, Sergey; Li, Heng

Phased nanopore assembly with Shasta and modular graph phasing with GFAse 用Shasta进行的分相纳米孔组装和用GFAse进行的模块化图形分相

GENOME RESEARCH

IF5.5

2024-04-16

OAAI

Lorig-Roach, Ryan; Meredith, Melissa; Monlong, Jean; Jain, Miten; Olsen, Hugh E.; Mcnulty, Brandy; Porubsky, David; Montague, Tessa G.; Lucas, Julian K.; Condon, Chris; Eizenga, Jordan M.; Juul, Sissel; Mckenzie, Sean K.; Simmonds, Sara E.; Park, Jimin; Asri, Mobin; Koren, Sergey; Eichler, Evan E.; Axel, Richard; Martin, Bruce; Carnevali, Paolo; Miga, Karen H.; Paten, Benedict

Improved sequence mapping using a complete reference genome and lift-over 使用完整的参考基因组和提升改进的序列作图

NATURE METHODS

IF32.1

2023-11-30

OAAI

Chen, Nae-Chyun; Paulin, Luis F.; Sedlazeck, Fritz J.; Koren, Sergey; Phillippy, Adam M.; Langmead, Ben

Pangenome graph construction from genome alignments with Minigraph-Cactus 用minigrap-cactus从基因组比对构建Pangenome图

NATURE BIOTECHNOLOGY

IF41.7

2023-05-10

OAAI

Hickey, Glenn; Monlong, Jean; Ebler, Jana; Novak, Adam M.; Eizenga, Jordan M.; Gao, Yan; Marschall, Tobias; Li, Heng; Paten, Benedict; Abel, Haley J.; Antonacci-Fulton, Lucinda L.; Asri, Mobin; Baid, Gunjan; Baker, Carl A.; Belyaeva, Anastasiya; Billis, Konstantinos; Bourque, Guillaume; Buonaiuto, Silvia; Carroll, Andrew; Chaisson, Mark J. P.; Chang, Pi-Chuan; Chang, Xian H.; Cheng, Haoyu; Chu, Justin; Cody, Sarah; Colonna, Vincenza; Cook, Daniel E.; Cook-Deegan, Robert M.; Cornejo, Omar E.; Diekhans, Mark; Doerr, Daniel; Ebert, Peter; Ebler, Jana; Eichler, Evan E.; Eizenga, Jordan M.; Fairley, Susan; Fedrigo, Olivier; Felsenfeld, Adam L.; Feng, Xiaowen; Fischer, Christian; Flicek, Paul; Formenti, Giulio; Frankish, Adam; Fulton, Robert S.; Gao, Yan; Garg, Shilpa; Garrison, Erik; Garrison, Nanibaa' A.; Giron, Carlos Garcia; Green, Richard E.; Groza, Cristian; Guarracino, Andrea; Haggerty, Leanne; Hall, Ira M.; Harvey, William T.; Haukness, Marina; Haussler, David; Heumos, Simon; Hickey, Glenn; Hoekzema, Kendra; Hourlier, Thibaut; Howe, Kerstin; Jain, Miten; Jarvis, Erich D.; Ji, Hanlee P.; Kenny, Eimear E.; Koenig, Barbara A.; Kolesnikov, Alexey; Korbel, Jan O.; Kordosky, Jennifer; Koren, Sergey; Lee, HoJoon; Lewis, Alexandra P.; Liao, Wen-Wei; Lu, Shuangjia; Lu, Tsung-Yu; Lucas, Julian K.; Hugo, Magalhaes; Santiago, Marco-Sola; Marijon, Pierre; Markello, Charles; Marschall, Tobias; Martin, Fergal J.; McCartney, Ann; McDaniel, Jennifer; Miga, Karen H.; Mitchell, Matthew W.; Monlong, Jean; Mountcastle, Jacquelyn; Munson, Katherine M.; Mwaniki, Moses Njagi; Nattestad, Maria; Novak, Adam M.; Nurk, Sergey; Olsen, Hugh E.; Olson, Nathan D.; Pesout, Trevor; Phillippy, Adam M.; Popejoy, Alice B.; Porubsky, David; Prins, Pjotr; Puiu, Daniela; Rautiainen, Mikko; Regier, Allison A.; Rhie, Arang; Sacco, Samuel; Sanders, Ashley D.; Schneider, Valerie A.; Schultz, Baergen, I; Shafin, Kishwar; Sibbesen, Jonas A.; Siren, Jouni; Smith, Michael W.; Sofia, Heidi J.; Abou Tayoun, Ahmad N.; Thibaud-Nissen, Francoise; Tomlinson, Chad; Tricomi, Francesca Floriana; Villani, Flavia; Vollger, Mitchell R.; Wagner, Justin; Walenz, Brian; Wang, Ting; Wood, Jonathan M. D.; Zimin, Aleksey, V; Zook, Justin M.

Telomere-to-telomere assembly of diploid chromosomes with Verkko 用Verkko进行二倍体染色体的端粒到端粒组装

NATURE BIOTECHNOLOGY

IF41.7

2023-02-16

103

OAAI

Rautiainen, Mikko; Nurk, Sergey; Walenz, Brian P.; Logsdon, Glennis A.; Porubsky, David; Rhie, Arang; Eichler, Evan E.; Phillippy, Adam M.; Koren, Sergey

A contiguous de novo genome assembly of sugar beet EL10 (Beta vulgaris L.)甜菜EL10 (Beta vulgaris L.) 的连续从头基因组组装

DNA RESEARCH

IF2.9

2022-10-05

OAAI

McGrath, J. Mitchell; Funk, Andrew; Galewski, Paul; Ou, Shujun; Townsend, Belinda; Davenport, Karen; Daligault, Hajnalka; Johnson, Shannon; Lee, Joyce; Hastie, Alex; Darracq, Aude; Willems, Glenda; Barnes, Steve; Liachko, Ivan; Sullivan, Shawn; Koren, Sergey; Phillippy, Adam; Wang, Jie; Liu, Tiffany; Pulman, Jane; Childs, Kevin; Shu, Shengqiang; Yocum, Anastasia; Fermin, Damian; Mutasa-Gottgens, Effie; Stevanato, Piergiorgio; Taguchi, Kazunori; Naegele, Rachel; Dorn, Kevin M.

A family of unusual immunoglobulin superfamily genes in an invertebrate histocompatibility complex 无脊椎动物组织相容性复合体中一个异常的免疫球蛋白超家族基因家族

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2022-09-26

OAAI

Huene, Aidan L.; Sanders, Steven M.; Ma, Zhiwei; Anh-Dao Nguyen; Koren, Sergey; Michaca, Manuel H.; Mullikin, James C.; Phillippy, Adam M.; Schnitzler, Christine E.; Baxevanis, Andreas D.; Nicotra, Matthew L.

Long-read mapping to repetitive reference sequences using Winnowmap2 使用Winnowmap2将长读映射到重复参考序列

NATURE METHODS

IF32.1

2022-04-01

OAAI

Jain, Chirag; Rhie, Arang; Hansen, Nancy F.; Koren, Sergey; Phillippy, Adam M.

Merfin: improved variant filtering, assembly evaluation and polishing via k-mer validation Merfin: 通过k-mer验证改进变体过滤、装配评估和抛光

NATURE METHODS

IF32.1

2022-03-31

OAAI

Formenti, Giulio; Rhie, Arang; Walenz, Brian P.; Thibaud-Nissen, Francoise; Shafin, Kishwar; Koren, Sergey; Myers, Eugene W.; Jarvis, Erich D.; Phillippy, Adam M.

研究方向