Trevor Pesout

barcelona institute of science & technology

H指数:20

被引数:6,957

个人简介

暂无内容

教育背景

暂无内容

工作经历

暂无内容

荣誉奖项

暂无内容

Scalable Nanopore sequencing of human genomes provides a comprehensive view of haplotype-resolved variation and methylation

NATURE METHODS

IF32.1

2023-09-1428

Kolmogorov, Mikhail; Billingsley, Kimberley J.; Mastoras, Mira; Meredith, Melissa; Monlong, Jean; Lorig-Roach, Ryan; Asri, Mobin; Alvarez Jerez, Pilar; Malik, Laksh; Dewan, Ramita; Reed, Xylena; Genner, Rylee M.; Daida, Kensuke; Behera, Sairam; Shafin, Kishwar; Pesout, Trevor; Prabakaran, Jeshuwin; Carnevali, Paolo; Yang, Jianzhi; Rhie, Arang; Scholz, Sonja W.; Traynor, Bryan J.; Miga, Karen H.; Jain, Miten; Timp, Winston; Phillippy, Adam M.; Chaisson, Mark; Sedlazeck, Fritz J.; Blauwendraat, Cornelis; Paten, Benedict

Pangenome graph construction from genome alignments with Minigraph-Cactus

用minigrap-cactus从基因组比对构建Pangenome图

NATURE BIOTECHNOLOGY

IF41.7

2023-05-1049

Hickey, Glenn; Monlong, Jean; Ebler, Jana; Novak, Adam M.; Eizenga, Jordan M.; Gao, Yan; Marschall, Tobias; Li, Heng; Paten, Benedict; Abel, Haley J.; Antonacci-Fulton, Lucinda L.; Asri, Mobin; Baid, Gunjan; Baker, Carl A.; Belyaeva, Anastasiya; Billis, Konstantinos; Bourque, Guillaume; Buonaiuto, Silvia; Carroll, Andrew; Chaisson, Mark J. P.; Chang, Pi-Chuan; Chang, Xian H.; Cheng, Haoyu; Chu, Justin; Cody, Sarah; Colonna, Vincenza; Cook, Daniel E.; Cook-Deegan, Robert M.; Cornejo, Omar E.; Diekhans, Mark; Doerr, Daniel; Ebert, Peter; Ebler, Jana; Eichler, Evan E.; Eizenga, Jordan M.; Fairley, Susan; Fedrigo, Olivier; Felsenfeld, Adam L.; Feng, Xiaowen; Fischer, Christian; Flicek, Paul; Formenti, Giulio; Frankish, Adam; Fulton, Robert S.; Gao, Yan; Garg, Shilpa; Garrison, Erik; Garrison, Nanibaa' A.; Giron, Carlos Garcia; Green, Richard E.; Groza, Cristian; Guarracino, Andrea; Haggerty, Leanne; Hall, Ira M.; Harvey, William T.; Haukness, Marina; Haussler, David; Heumos, Simon; Hickey, Glenn; Hoekzema, Kendra; Hourlier, Thibaut; Howe, Kerstin; Jain, Miten; Jarvis, Erich D.; Ji, Hanlee P.; Kenny, Eimear E.; Koenig, Barbara A.; Kolesnikov, Alexey; Korbel, Jan O.; Kordosky, Jennifer; Koren, Sergey; Lee, HoJoon; Lewis, Alexandra P.; Liao, Wen-Wei; Lu, Shuangjia; Lu, Tsung-Yu; Lucas, Julian K.; Hugo, Magalhaes; Santiago, Marco-Sola; Marijon, Pierre; Markello, Charles; Marschall, Tobias; Martin, Fergal J.; McCartney, Ann; McDaniel, Jennifer; Miga, Karen H.; Mitchell, Matthew W.; Monlong, Jean; Mountcastle, Jacquelyn; Munson, Katherine M.; Mwaniki, Moses Njagi; Nattestad, Maria; Novak, Adam M.; Nurk, Sergey; Olsen, Hugh E.; Olson, Nathan D.; Pesout, Trevor; Phillippy, Adam M.; Popejoy, Alice B.; Porubsky, David; Prins, Pjotr; Puiu, Daniela; Rautiainen, Mikko; Regier, Allison A.; Rhie, Arang; Sacco, Samuel; Sanders, Ashley D.; Schneider, Valerie A.; Schultz, Baergen, I; Shafin, Kishwar; Sibbesen, Jonas A.; Siren, Jouni; Smith, Michael W.; Sofia, Heidi J.; Abou Tayoun, Ahmad N.; Thibaud-Nissen, Francoise; Tomlinson, Chad; Tricomi, Francesca Floriana; Villani, Flavia; Vollger, Mitchell R.; Wagner, Justin; Walenz, Brian; Wang, Ting; Wood, Jonathan M. D.; Zimin, Aleksey, V; Zook, Justin M.

PrecisionFDA Truth Challenge V2: Calling variants from short and long reads in difficult-to-map regions

PrecisionFDA真相挑战V2: 在难以映射的区域中从短读和长读调用变体

CELL GENOMICS

IF9

2022-05-0157

OAAI

Olson, Nathan D.; Wagner, Justin; McDaniel, Jennifer; Stephens, Sarah H.; Westreich, Samuel T.; Prasanna, Anish G.; Johanson, Elaine; Boja, Emily; Maier, Ezekiel J.; Serang, Omar; Jaspez, David; Lorenzo-Salazar, Jose M.; Munoz-Barrera, Adrian; Rubio-Rodriguez, Luis A.; Flores, Carlos; Kyriakidis, Konstantinos; Malousi, Andigoni; Shafin, Kishwar; Pesout, Trevor; Jain, Miten; Paten, Benedict; Chang, Pi-Chuan; Kolesnikov, Alexey; Nattestad, Maria; Baid, Gunjan; Goel, Sidharth; Yang, Howard; Carroll, Andrew; Eveleigh, Robert; Bourgey, Mathieu; Bourque, Guillaume; Li, Gen; Ma, ChouXian; Tang, LinQi; Du, YuanPing; Zhang, ShaoWei; Morata, Jordi; Tonda, Raul; Parra, Genis; Trotta, Jean-Remi; Brueffer, Christian; Demirkaya-Budak, Sinem; Kabakci-Zorlu, Duygu; Turgut, Deniz; Kalay, Ozem; Narci, Kubra; Arslan, Elif; Brown, Richard; Johnson, Ivan J.; Dolgoborodov, Alexey; Semenyuk, Vladimir; Jain, Amit; Tetikol, H. Serhat; Jain, Varun; Ruehle, Mike; Lajoie, Bryan; Roddey, Cooper; Catreux, Severine; Mehio, Rami; Ahsan, Mian Umair; Liu, Qian; Wang, Kai; Sahraeian, Sayed Mohammad Ebrahim; Fang, Li Tai; Mohiyuddin, Marghoob; Hung, Calvin; Jain, Chirag; Feng, Hanying; Li, Zhipan; Chen, Luoqi; Sedlazeck, Fritz J.; Zook, Justin M.

Accelerated identification of disease-causing variants with ultra-rapid nanopore genome sequencing

NATURE BIOTECHNOLOGY

IF41.7

2022-03-2848

OAAI

Goenka, Sneha D.; Gorzynski, John E.; Shafin, Kishwar; Fisk, Dianna G.; Pesout, Trevor; Jensen, Tanner D.; Jean Monlong; Pi-Chuan Chang; Baid, Gunjan; Bernstein, Jonathan A.; Christle, Jeffrey W.; Dalton, Karen P.; Garalde, Daniel R.; Grove, Megan E.; Guillory, Joseph; Kolesnikov, Alexey; Nattestad, Maria; Ruzhnikov, Maura R. Z.; Samadi, Mehrzad; Sethia, Ankit; Spiteri, Elizabeth; Wright, Christopher J.; Xiong, Katherine; Zhu, Tong; Jain, Miten; Sedlazeck, Fritz J.; Carroll, Andrew; Paten, Benedict; Ashley, Euan A.

Ultrarapid Nanopore Genome Sequencing in a Critical Care Setting

重症监护环境中的超微粒纳米孔基因组测序

NEW ENGLAND JOURNAL OF MEDICINE

IF78.5

2022-02-17111

Gorzynski, John E.; Goenka, Sneha D.; Shafin, Kishwar; Jensen, Tanner D.; Fisk, Dianna G.; Grove, Megan E.; Spiteri, Elizabeth; Pesout, Trevor; Monlong, Jean; Baid, Gunjan; Bernstein, Jonathan A.; Ceresnak, Scott; Chang, Pi-Chuan; Christle, Jeffrey W.; Chubb, Henry; Dalton, Karen P.; Dunn, Kyla; Garalde, Daniel R.; Guillory, Joseph; Knowles, Joshua W.; Kolesnikov, Alexey; Ma, Michael; Moscarello, Tia; Nattestad, Maria; Perez, Marco; Ruzhnikov, Maura R. Z.; Samadi, Mehrzad; Setia, Ankit; Wright, Chris; Wusthoff, Courtney J.; Xiong, Katherine; Zhu, Tong; Jain, Miten; Sedlazeck, Fritz J.; Carroll, Andrew; Paten, Benedict; Ashley, Euan A.

Haplotype-aware variant calling with PEPPER-Margin-DeepVariant enables high accuracy in nanopore long-reads

NATURE METHODS

IF32.1

2021-11-01131

OAAI

Nanopore sequencing and the Shasta toolkit enable efficient de novo assembly of eleven human genomes

纳米孔测序和Shasta工具包可以有效地从头组装11个人类基因组

NATURE BIOTECHNOLOGY

IF41.7

2020-05-04282

OAAI

Shafin, Kishwar; Pesout, Trevor; Lorig-Roach, Ryan; Haukness, Marina; Olsen, Hugh E.; Bosworth, Colleen; Armstrong, Joel; Tigyi, Kristof; Maurer, Nicholas; Koren, Sergey; Sedlazeck, Fritz J.; Marschall, Tobias; Mayes, Simon; Costa, Vania; Zook, Justin M.; Liu, Kelvin J.; Kilburn, Duncan; Sorensen, Melanie; Munson, Katy M.; Vollger, Mitchell R.; Monlong, Jean; Garrison, Erik; Eichler, Evan E.; Salama, Sofie; Haussler, David; Green, Richard E.; Akeson, Mark; Phillippy, Adam; Miga, Karen H.; Carnevali, Paolo; Jain, Miten; Paten, Benedict

Haplotype-aware diplotyping from noisy long reads

从嘈杂的长读段中获得单倍型感知的二倍体分型

GENOME BIOLOGY

IF9.4

2019-06-0340

OAAI

Trevor Pesout

个人简介

教育背景

工作经历

荣誉奖项

研究方向