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Assessment of Lorlatinib Resistance in ALKPositive Non-Small Cell Lung Cancer Patient Samples Using Spatial Transcriptomics Patel, Bidish; Richieri, Peter; Lu, Chenyue; Raabe, Michael; Mino-Kenudson, Mari; Aryee, Martin; Gainor, Justin; Hata, Aaron; Ting, David; Lin, Jessica 分享 收藏
Risk of bleeding in patients with essential thrombocythemia and extreme thrombocytosis Venkat, Rathnam K.; Redd, Robert A.; Harris, Amyah C.; Aryee, Martin J.; Marneth, Anna E.; Kamaz, Baransel; Kim, Chulwoo J.; Wazir, Mohammed; Weeks, Lachelle D.; Stahl, Maximilian; Deangelo, Daniel J.; Lindsley, R. Coleman; Luskin, Marlise R.; Hobbs, Gabriela S.; How, Joan 分享 收藏
HCC spatial transcriptomic profiling reveals significant and potentially targetable cancer-endothelial interactions Lu, Chenyue; Pankaj, Amaya; Raabe, Michael; Nawrocki, Cole; Liu, Ann; Xu, Nova; Patel, Bidish K.; Emmett, Matthew J.; Coley, Avril K.; Ferrone, Cristina R.; Deshpande, Vikram; Bhan, Irun; Hoshida, Yujin; Ting, David T.; Aryee, Martin J.; Franses, Joseph W. 分享 收藏
Repeat RNA mediated disruption of cellular plasticity in pancreatic cancer You, Eunae; Danaher, Patrick; Lu, Chenyue; Sun, Siyu; Zou, Luli; Phillips, Ildiko; Rojas, Alexandra; Ho, Natalie; Song, Yuhui; Raabe, Michael; Xu, Katherine; Richieri, Peter; Li, Hao; Aston, Natalie; Porter, Rebecca; Patel, Bidish; Nieman, Linda; Schurman, Nathan; Hudson, Briana; North, Khrystyna; Church, Sarah; Deshpande, Vikram; Liss, Andrew; Kim, Tae; Cui, Yi; Kim, Youngmi; Greenbaum, Benjamin; Aryee, Martin; Ting, David 分享 收藏
Spatial Transcriptomics Unveils Intraductal Papillary Mucinous Neoplasm Heterogeneity: From Novel Clusters to Immune Dynamics Pankaj, Amaya; Raabe, Michael J.; Song, Yuhui; Patel, Bidish K.; Xu, Katherine; Kocher, Joshua R.; Caldwell, Nicholas J.; Ganci, Maria L.; Nieman, Linda T.; Mino-Kenudson, Mari; Deshpande, Vikram; Bardeesy, Nabeel; Fernandez-Del Castillo, Carlos; Aryee, Martin J.; Ting, David T.; Hernandez-Barco, Yasmin G. 分享 收藏
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A CTCF-binding site in the Mdm1-Il22-Ifng locus shapes cytokine expression profiles and plays a critical role in early Th1 cell fate specification Liu, Chunhong; Nagashima, Hiroyuki; Fernando, Nilisha; Bass, Victor; Gopalakrishnan, Jaanam; Signorella, Sadie; Montgomery, Will; Lim, Ai Ing; Harrison, Oliver; Reich, Lauren; Yao, Chen; Sun, Hong-Wei; Brooks, Stephen R.; Jiang, Kan; Nagarajan, Vijayaraj; Zhao, Yongbing; Jung, Seolkyoung; Phillips, Rachael; Mikami, Yohei; Lareau, Caleb A.; Kanno, Yuka; Jankovic, Dragana; Aryee, Martin J.; Pekowska, Aleksandra; Belkaid, Yasmine; O'Shea, John; Shih, Han-Yu 分享 收藏
Genomic distinctions of HIV- and EBV-associated DLBCL in a diverse African cohort Antel, Katherine; Nesmelov, Aleksander; Wu, Meng-Xuan; Slome, Charlotte; Chetty, Dharshnee; Kriel, Raymond; Postovalova, Ekaterina; Redd, Robert; Aryee, Martin; Armand, Delphine; McGrath, Lauren; Xiong, Nina; Oosthuizen, Jenna; Brown, Karryn; Tyshevich, Andrey; Podsvirova, Svetlana; Frenkel, Felix; Kuzkina, Natalia; Scher, Jessica; Tazearslan, Cagdas; Zornikova, Ksenia; Kotlov, Nikita; Bagaev, Aleksander; Fowler, Nathan; Freedman, Arnold; Rodig, Scott; Verburgh, Estelle; Murakami, Mark A. 分享 收藏
Dissecting pancreatic cancer tumor- immune microenvironment crosstalk using spatial transcriptomics Pankaj, Amaya; Raabe, Michael J.; Patel, Bidish K.; Lang, Evan R.; Kocher, Joshua R.; Xu, Katherine H.; Nieman, Linda T.; Hwang, William L.; Kimmelman, Alec C.; Ryan, David P.; Hong, Theodore S.; Aryee, Martin J.; Ting, David T. 分享 收藏
Human lung cancer harbors spatially organized stem-immunity hubs associated with response to immunotherapy 人类肺癌具有与免疫疗法反应相关的空间组织的茎免疫枢纽 Chen, Jonathan H.; Nieman, Linda T.; Spurrell, Maxwell; Jorgji, Vjola; Elmelech, Liad; Richieri, Peter; Xu, Katherine H.; Madhu, Roopa; Parikh, Milan; Zamora, Izabella; Mehta, Arnav; Nabel, Christopher S.; Freeman, Samuel S.; Pirl, Joshua D.; Lu, Chenyue; Meador, Catherine B.; Barth, Jaimie L.; Sakhi, Mustafa; Tang, Alexander L.; Sarkizova, Siranush; Price, Colles; Fernandez, Nicolas F.; Emanuel, George; He, Jiang; Van Raay, Katrina; Reeves, Jason W.; Yizhak, Keren; Hofree, Matan; Shih, Angela; Sade-Feldman, Moshe; Boland, Genevieve M.; Pelka, Karin; Aryee, Martin J.; Mino-Kenudson, Mari; Gainor, Justin F.; Korsunsky, Ilya; Hacohen, Nir 分享 收藏
Massively parallel single-cell mitochondrial DNA genotyping and chromatin profiling (vol 39, pg 451, 2021) 大规模并行单细胞线粒体DNA基因分型和染色质谱分析 (第39卷，451页，2021) Lareau, Caleb A.; Ludwig, Leif S.; Muus, Christoph; Gohil, Satyen H.; Zhao, Tongtong; Chiang, Zachary; Pelka, Karin; Verboon, Jeffrey M.; Luo, Wendy; Christian, Elena; Rosebrock, Daniel; Getz, Gad; Boland, Genevieve M.; Chen, Fei; Buenrostro, Jason D.; Hacohen, Nir; Wu, Catherine J.; Aryee, Martin J.; Regev, Aviv; Sankaran, Vijay G. 分享 收藏
Highly connected 3D chromatin networks established by an oncogenic fusion protein shape tumor cell identity Sanalkumar, Rajendran; Dong, Rui; Lee, Lukuo; Xing, Yu -Hang; Iyer, Sowmya; Letovanec, Igor; La Rosa, Stefano; Finzi, Giovanna; Musolino, Elettra; Papait, Roberto; Chebib, Ivan; Nielsen, G. Petur; Renella, Raffaele; Cote, Gregory M.; Choy, Edwin; Aryee, Martin; Stegmaier, Kimberly; Stamenkovic, Ivan; Rivera, Miguel N.; Riggi, Nicole 分享 收藏
Characterizing the effects of neoadjuvant therapy in PDAC Pankaj, Amaya; Raabe, Michael J.; Patel, Bidish; Lang, Evan R.; Kocher, Joshua; Xu, Katherine H.; Nieman, Linda T.; Kimmelman, Alec C.; Ryan, David P.; Hong, Theodore S.; Hwang, William L.; Aryee, Martin; Ting, David T. 分享 收藏
COMMON AND RARE GENETIC RISK FACTORS FOR SCHIZOPHRENIA AT CHROMOSOME 22Q INDUCE CONVERGENT, DISPERSED CHANGES IN GENE EXPRESSION Nadig, Ajay; Tegtmeyer, Matthew; Weiner, Daniel J.; Ling, Emi; Gordon, Aaron; O'Connor, Luke J.; Aryee, Martin J.; Bearden, Carrie E.; Geschwind, Daniel; McCarroll, Steve A.; Nehme, Ralda; Robinson, Elise B. 分享 收藏
Single-nucleus and spatial transcriptome profiling of pancreatic cancer identifies multicellular dynamics associated with neoadjuvant treatment 胰腺癌的单核和空间转录组分析确定与新辅助治疗相关的多细胞动力学 Hwang, William L.; Jagadeesh, Karthik A.; Guo, Jimmy A.; Hoffman, Hannah, I; Yadollahpour, Payman; Reeves, Jason W.; Mohan, Rahul; Drokhlyansky, Eugene; Van Wittenberghe, Nicholas; Ashenberg, Orr; Farhi, Samouil L.; Schapiro, Denis; Divakar, Prajan; Miller, Eric; Zollinger, Daniel R.; Eng, George; Schenkel, Jason M.; Su, Jennifer; Shiau, Carina; Yu, Patrick; Freed-Pastor, William A.; Abbondanza, Domenic; Mehta, Arnav; Gould, Joshua; Lambden, Conner; Porter, Caroline B. M.; Tsankov, Alexander; Dionne, Danielle; Waldman, Julia; Cuoco, Michael S.; Lan Nguyen; Delorey, Toni; Phillips, Devan; Barth, Jaimie L.; Kem, Marina; Rodrigues, Clifton; Ciprani, Debora; Roldan, Jorge; Zelga, Piotr; Jorgji, Vjola; Chen, Jonathan H.; Ely, Zackery; Zhao, Daniel; Fuhrman, Kit; Fropf, Robin; Beechem, Joseph M.; Loeffler, Jay S.; Ryan, David P.; Weekes, Colin D.; Ferrone, Cristina R.; Qadan, Motaz; Aryee, Martin J.; Jain, Rakesh K.; Neuberg, Donna S.; Wo, Jennifer Y.; Hong, Theodore S.; Xavier, Ramnik; Aguirre, Andrew J.; Rozenblatt-Rosen, Orit; Mino-Kenudson, Mari; Fernandez-del Castillo, Carlos; Liss, Andrew S.; Ting, David T.; Jacks, Tyler; Regev, Aviv 分享 收藏
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Augmenting and directing long-range CRISPR-mediated activation in human cells (vol 18, pg 1075, 2021) Tak, Y. Esther; Horng, Joy E.; Perry, Nicholas T.; Schultz, Hayley T.; Iyer, Sowmya; Yao, Qiuming; Zou, Luli S.; Aryee, Martin J.; Pinello, Luca; Joung, J. Keith 分享 收藏
CRISPR-Cas9 treatment partially restores amyloid-β 42/40 in human fibroblasts with the Alzheimer's disease PSEN1 M146L mutation Konstantinidis, Evangelos; Molisak, Agnieszka; Perrin, Florian; Streubel-Gallasch, Linn; Fayad, Sarah; Kim, Daniel Y.; Petri, Karl; Aryee, Martin J.; Aguilar, Ximena; Gyorgy, Bence; Giedraitis, Vilmantas; Joung, J. Keith; Pattanayak, Vikram; Essand, Magnus; Erlandsson, Anna; Berezovska, Oksana; Ingelsson, Martin 分享 收藏
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