未登录 分享 收藏
Conformation-aware structure prediction of antigen-recognizing immune proteins 抗原识别免疫蛋白的构象感知结构预测 Dreyer, Frederic A.; Ludwiczak, Jan; Martinkus, Karolis; Abanades, Brennan; Alberstein, Robert G.; Kessel, Pan; Rao, Pranav; Lee, Jae Hyeon; Bonneau, Richard; Watkins, Andrew M.; Seeger, Franziska 分享 收藏
分享 收藏
RNA-Puzzles Round V: blind predictions of 23 RNA structures Bu, Fan; Adam, Yagoub; Adamiak, Ryszard W.; Antczak, Maciej; de Aquino, Belisa Rebeca H.; Badepally, Nagendar Goud; Batey, Robert T.; Baulin, Eugene F.; Boinski, Pawel; Boniecki, Michal J.; Bujnicki, Janusz M.; Carpenter, Kristy A.; Chacon, Jose; Chen, Shi-Jie; Chiu, Wah; Cordero, Pablo; Das, Naba Krishna; Das, Rhiju; Dawson, Wayne K.; Dimaio, Frank; Ding, Feng; Dock-Bregeon, Anne-Catherine; Dokholyan, Nikolay V.; Dror, Ron O.; Dunin-Horkawicz, Stanislaw; Eismann, Stephan; Ennifar, Eric; Esmaeeli, Reza; Farsani, Masoud Amiri; Ferre-D'Amare, Adrian R.; Geniesse, Caleb; Ghanim, George E.; Guzman, Horacio V.; Hood, Iris V.; Huang, Lin; Jain, Dharm Skandh; Jaryani, Farhang; Jin, Lei; Joshi, Astha; Karelina, Masha; Kieft, Jeffrey S.; Kladwang, Wipapat; Kmiecik, Sebastian; Koirala, Deepak; Kollmann, Markus; Kretsch, Rachael C.; Kurcinski, Mateusz; Li, Jun; Li, Shuang; Magnus, Marcin; Masquida, Benoit; Moafinejad, S. Naeim; Mondal, Arup; Mukherjee, Sunandan; Nguyen, Thi Hoang Duong; Nikolaev, Grigory; Nithin, Chandran; Nye, Grace; Pandaranadar Jeyeram, Iswarya P. N.; Perez, Alberto; Pham, Phillip; Piccirilli, Joseph A.; Pilla, Smita Priyadarshini; Pluta, Radoslaw; Poblete, Simon; Ponce-Salvatierra, Almudena; Popenda, Mariusz; Popenda, Lukasz; Pucci, Fabrizio; Rangan, Ramya; Ray, Angana; Ren, Aiming; Sarzynska, Joanna; Sha, Congzhou Mike; Stefaniak, Filip; Su, Zhaoming; Suddala, Krishna C.; Szachniuk, Marta; Townshend, Raphael; Trachman III, Robert J.; Wang, Jian; Wang, Wenkai; Watkins, Andrew; Wirecki, Tomasz K.; Xiao, Yi; Xiong, Peng; Xiong, Yiduo; Yang, Jianyi; Yesselman, Joseph David; Zhang, Jinwei; Zhang, Yi; Zhang, Zhenzhen; Zhou, Yuanzhe; Zok, Tomasz; Zhang, Dong; Zhang, Sicheng; Zyla, Adriana; Westhof, Eric; Miao, Zhichao 分享 收藏
Rapid affinity optimization of an anti-TREM2 clinical lead antibody by cross-lineage immune repertoire mining Hsiao, Yi-Chun; Wallweber, Heidi Ackerly; Alberstein, Robert G.; Lin, Zhonghua; Du, Changchun; Etxeberria, Ainhoa; Aung, Theint; Shang, Yonglei; Seshasayee, Dhaya; Seeger, Franziska; Watkins, Andrew M.; Hansen, David V.; Bohlen, Christopher J.; Hsu, Peter L.; Hotzel, Isidro 分享 收藏
OpenFold: retraining AlphaFold2 yields new insights into its learning mechanisms and capacity for generalization OpenFold: 重新训练AlphaFold2对其学习机制和泛化能力产生了新的见解 Ahdritz, Gustaf; Bouatta, Nazim; Floristean, Christina; Kadyan, Sachin; Xia, Qinghui; Gerecke, William; O'Donnell, Timothy J.; Berenberg, Daniel; Fisk, Ian; Zanichelli, Niccolo; Zhang, Bo; Nowaczynski, Arkadiusz; Wang, Bei; Stepniewska-Dziubinska, Marta M.; Zhang, Shang; Ojewole, Adegoke; Guney, Murat Efe; Biderman, Stella; Watkins, Andrew M.; Ra, Stephen; Lorenzo, Pablo Ribalta; Nivon, Lucas; Weitzner, Brian; Ban, Yih-En Andrew; Chen, Shiyang; Zhang, Minjia; Li, Conglong; Song, Shuaiwen Leon; He, Yuxiong; Sorger, Peter K.; Mostaque, Emad; Zhang, Zhao; Bonneau, Richard; AlQuraishi, Mohammed 分享 收藏
分享 收藏
Community science designed ribosomes with beneficial phenotypes Krueger, Antje M.; Watkins, Andrew; Wellington-Oguri, Roger; Romano, Jonathan; Kofman, Camila; DeFoe, Alysse; Kim, Yejun; Anderson-Lee, Jeff; Fisker, Eli; Townley, Jill E.; d'Aquino, Anne; Das, Rhiju C.; Jewett, Michael 分享 收藏
分享 收藏
Deep learning models for predicting RNA degradation via dual crowdsourcing Wayment-Steele, Hannah K.; Kladwang, Wipapat; Watkins, Andrew M.; Kim, Do Soon; Tunguz, Bojan; Reade, Walter; Demkin, Maggie; Romano, Jonathan; Wellington-Oguri, Roger; Nicol, John J.; Gao, Jiayang; Onodera, Kazuki; Fujikawa, Kazuki; Mao, Hanfei; Vandewiele, Gilles; Tinti, Michele; Steenwinckel, Bram; Ito, Takuya; Noumi, Taiga; He, Shujun; Ishi, Keiichiro; Lee, Youhan; Ozturk, Fatih; Chiu, King Yuen; Ozturk, Emin; Amer, Karim; Fares, Mohamed; Participants, Eterna; Das, Rhiju 分享 收藏
分享 收藏
分享 收藏
Three-dimensional structure-guided evolution of a ribosome with tethered subunits Kim, Do Soon; Watkins, Andrew; Bidstrup, Erik; Lee, Joongoo; Topkar, Ved; Kofman, Camila; Schwarz, Kevin J.; Liu, Yan; Pintilie, Grigore; Roney, Emily; Das, Rhiju; Jewett, Michael C. 分享 收藏
Combinatorial optimization of mRNA structure, stability, and translation for RNA-based therapeutics 基于RNA的疗法的mRNA结构，稳定性和翻译的组合优化 Leppek, Kathrin; Byeon, Gun Woo; Kladwang, Wipapat; Wayment-Steele, Hannah K.; Kerr, Craig H.; Xu, Adele F.; Kim, Do Soon; Topkar, Ved V.; Choe, Christian; Rothschild, Daphna; Tiu, Gerald C.; Wellington-Oguri, Roger; Fujii, Kotaro; Sharma, Eesha; Watkins, Andrew M.; Nicol, John J.; Romano, Jonathan; Tunguz, Bojan; Diaz, Fernando; Cai, Hui; Guo, Pengbo; Wu, Jiewei; Meng, Fanyu; Shi, Shuai; Participants, Eterna; Dormitzer, Philip R.; Solorzano, Alicia; Barna, Maria; Das, Rhiju 分享 收藏
分享 收藏
Ensuring scientific reproducibility in bio-macromolecular modeling via extensive, automated benchmarks Leman, Julia Koehler; Lyskov, Sergey; Lewis, Steven M.; Adolf-Bryfogle, Jared; Alford, Rebecca F.; Barlow, Kyle; Ben-Aharon, Ziv; Farrell, Daniel; Fell, Jason; Hansen, William A.; Harmalkar, Ameya; Jeliazkov, Jeliazko; Kuenze, Georg; Krys, Justyna D.; Ljubetic, Ajasja; Loshbaugh, Amanda L.; Maguire, Jack; Moretti, Rocco; Mulligan, Vikram Khipple; Nance, Morgan L.; Nguyen, Phuong T.; Conchuir, Shane O.; Burman, Shourya S. Roy; Samanta, Rituparna; Smith, Shannon T.; Teets, Frank; Tiemann, Johanna K. S.; Watkins, Andrew; Woods, Hope; Yachnin, Brahm J.; Bahl, Christopher D.; Bailey-Kellogg, Chris; Baker, David; Das, Rhiju; DiMaio, Frank; Khare, Sagar D.; Kortemme, Tanja; Labonte, Jason W.; Lindorff-Larsen, Kresten; Meiler, Jens; Schief, William; Schueler-Furman, Ora; Siegel, Justin B.; Stein, Amelie; Yarov-Yarovoy, Vladimir; Kuhlman, Brian; Leaver-Fay, Andrew; Gront, Dominik; Gray, Jeffrey J.; Bonneau, Richard 分享 收藏
Theoretical basis for stabilizing messenger RNA through secondary structure design (vol 49, pg 10604, 2021) Wayment-Steele, Hannah K.; Kim, Do Soon; Choe, Christian A.; Nicol, John J.; Wellington-Oguri, Roger; Watkins, Andrew M.; Sperberg, R. Andres Parra; Huang, Po-Ssu; Participants, Eterna; Das, Rhiju 分享 收藏
Theoretical basis for stabilizing messenger RNA through secondary structure design Wayment-Steele, Hannah K.; Kim, Do Soon; Choe, Christian A.; Nicol, John J.; Wellington-Oguri, Roger; Watkins, Andrew M.; Sperberg, R. Andres Parra; Huang, Po-Ssu; Participants, Eterna; Das, Rhiju 分享 收藏
Computationally designed peptide macrocycle inhibitors of New Delhi metallo-β-lactamase 1 新德里金属 β-内酰胺酶1的计算设计肽大环抑制剂 Mulligan, Vikram Khipple; Workman, Sean; Sun, Tianjun; Rettie, Stephen; Li, Xinting; Worrall, Liam J.; Craven, Timothy W.; King, Dustin T.; Hosseinzadeh, Parisa; Watkins, Andrew M.; Renfrew, P. Douglas; Guffy, Sharon; Labonte, Jason W.; Moretti, Rocco; Bonneau, Richard; Strynadka, Natalie C. J.; Baker, David 分享 收藏
De novo 3D models of SARS-CoV-2 RNA elements from consensus experimental secondary structures Rangan, Ramya; Watkins, Andrew M.; Chacon, Jose; Kretsch, Rachael; Kladwang, Wipapat; Zheludev, Ivan N.; Townley, Jill; Rynge, Mats; Thain, Gregory; Das, Rhiju 分享 收藏
.png){kind=icon}
未登录.png){kind=icon}
.png){kind=icon}
.png){kind=icon}
.png){kind=icon}
.png){kind=icon}
