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Gapless assembly of complete human and plant chromosomes using only nanopore sequencing 仅使用纳米孔测序的完整人类和植物染色体的无间隙组装 Koren, Sergey; Bao, Zhigui; Guarracino, Andrea; Ou, Shujun; Goodwin, Sara; Jenike, Katharine M.; Lucas, Julian; Mcnulty, Brandy; Park, Jimin; Rautiainen, Mikko; Rhie, Arang; Roelofs, Dick; Schneiders, Harrie; Vrijenhoek, Ilse; Nijbroek, Koen; Nordesjo, Olle; Nurk, Sergey; Vella, Mike; Lawrence, Katherine R.; Ware, Doreen; Schatz, Michael C.; Garrison, Erik; Huang, Sanwen; Mccombie, William Richard; Miga, Karen H.; Wittenberg, Alexander H. J.; Phillippy, Adam M. 分享 收藏
Telomere-to-telomere assemblies of cattle and sheep Y-chromosomes uncover divergent structure and gene content 牛和羊Y染色体的端粒到端粒组装揭示了不同的结构和基因含量 Olagunju, Temitayo A.; Rosen, Benjamin D.; Neibergs, Holly L.; Becker, Gabrielle M.; Davenport, Kimberly M.; Elsik, Christine G.; Hadfield, Tracy S.; Koren, Sergey; Kuhn, Kristen L.; Rhie, Arang; Shira, Katie A.; Skibiel, Amy L.; Stegemiller, Morgan R.; Thorne, Jacob W.; Villamediana, Patricia; Cockett, Noelle E.; Murdoch, Brenda M.; Smith, Timothy P. L. 分享 收藏
Distinct patterns of genetic variation at low-recombining genomic regions represent haplotype structure Ishigohoka, Jun; Bascon-Cardozo, Karen; Bours, Andrea; Fuss, Janina; Rhie, Arang; Mountcastle, Jacquelyn; Haase, Bettina; Chow, William; Collins, Joanna; Howe, Kerstin; Uliano-Silva, Marcela; Fedrigo, Olivier; Jarvis, Erich D.; Perez-Tris, Javier; Carlos Illera, Juan; Liedvogel, Miriam 分享 收藏
The Ruminant Telomere-to-Telomere (RT2T) Consortium 反刍动物端粒到端粒（RT2T）联盟 Kalbfleisch, Theodore S.; McKay, Stephanie D.; Murdoch, Brenda M.; Adelson, David L.; Almansa-Villa, Diego; Becker, Gabrielle; Beckett, Linda M.; Benitez-Galeano, Maria Jose; Biase, Fernando; Casey, Theresa; Chuong, Edward; Clark, Emily; Clarke, Shannon; Cockett, Noelle; Couldrey, Christine; Davis, Brian W.; Elsik, Christine G.; Faraut, Thomas; Gao, Yahui; Genet, Carine; Grady, Patrick; Green, Jonathan; Green, Richard; Guan, Dailu; Hagen, Darren; Hartley, Gabrielle A.; Heaton, Mike; Hoyt, Savannah J.; Huang, Wen; Jarvis, Erich; Kalleberg, Jenna; Khatib, Hasan; Koepfi, Klaus-Peter; Koltes, James; Koren, Sergey; Kuehn, Christa; Leeb, Tosso; Leonard, Alexander; Liu, George E.; Low, Wai Yee; Mcconnell, Hunter; Mcrae, Kathryn; Miga, Karen; Mousel, Michelle; Neibergs, Holly; Olagunju, Temitayo; Pennell, Matt; Petry, Bruna; Pewsner, Mirjam; Phillippy, Adam M.; Pickett, Brandon D.; Pineda, Paulene; Potapova, Tamara; Rachagani, Satyanarayana; Rhie, Arang; Rijnkels, Monique; Robic, Annie; Rodriguez Osorio, Nelida; Safonova, Yana; Schettini, Gustavo; Schnabel, Robert D.; Sirpu Natesh, Nagabhishek; Stegemiller, Morgan; Storer, Jessica; Stothard, Paul; Stull, Caleb; Tosser-Klopp, Gwenola; Traglia, German M.; Tuggle, Christopher K.; Van Tassell, Curtis P.; Watson, Corey; Weikard, Rosemarie; Wimmers, Klaus; Xie, Shangqian; Yang, Liu; Smith, Timothy P. L.; O'Neill, Rachel J.; Rosen, Benjamin D. 分享 收藏
A High-Quality Blue Whale Genome, Segmental Duplications, and Historical Demography 高质量的蓝鲸基因组，片段复制和历史人口统计学 Bukhman, Yury, V; Morin, Phillip A.; Meyer, Susanne; Chu, Li-Fang; Jacobsen, Jeff K.; Antosiewicz-Bourget, Jessica; Mamott, Daniel; Gonzales, Maylie; Argus, Cara; Bolin, Jennifer; Berres, Mark E.; Fedrigo, Olivier; Steill, John; Swanson, Scott A.; Jiang, Peng; Rhie, Arang; Formenti, Giulio; Phillippy, Adam M.; Harris, Robert S.; Wood, Jonathan M. D.; Howe, Kerstin; Kirilenko, Bogdan M.; Munegowda, Chetan; Hiller, Michael; Jain, Aashish; Kihara, Daisuke; Johnston, J. Spencer; Ionkov, Alexander; Raja, Kalpana; Toh, Huishi; Lang, Aimee; Wolf, Magnus; Jarvis, Erich D.; Thomson, James A.; Chaisson, Mark J. P.; Stewart, Ron 分享 收藏
Scalable, accessible and reproducible reference genome assembly and evaluation in Galaxy Lariviere, Delphine; Abueg, Linelle; Brajuka, Nadolina; Gallardo-Alba, Cristobal; Gruening, Bjorn; Ko, Byung June; Ostrovsky, Alex; Palmada-Flores, Marc; Pickett, Brandon D.; Rabbani, Keon; Antunes, Agostinho; Balacco, Jennifer R.; Chaisson, Mark J. P.; Cheng, Haoyu; Collins, Joanna; Couture, Melanie; Denisova, Alexandra; Fedrigo, Olivier; Gallo, Guido Roberto; Giani, Alice Maria; Gooder, Grenville MacDonald; Horan, Kathleen; Jain, Nivesh; Johnson, Cassidy; Kim, Heebal; Lee, Chul; Marques-Bonet, Tomas; O'Toole, Brian; Rhie, Arang; Secomandi, Simona; Sozzoni, Marcella; Tilley, Tatiana; Uliano-Silva, Marcela; van den Beek, Marius; Williams, Robert W.; Waterhouse, Robert M.; Phillippy, Adam M.; Jarvis, Erich D.; Schatz, Michael C.; Nekrutenko, Anton; Formenti, Giulio 分享 收藏
Scalable Nanopore sequencing of human genomes provides a comprehensive view of haplotype-resolved variation and methylation Kolmogorov, Mikhail; Billingsley, Kimberley J.; Mastoras, Mira; Meredith, Melissa; Monlong, Jean; Lorig-Roach, Ryan; Asri, Mobin; Alvarez Jerez, Pilar; Malik, Laksh; Dewan, Ramita; Reed, Xylena; Genner, Rylee M.; Daida, Kensuke; Behera, Sairam; Shafin, Kishwar; Pesout, Trevor; Prabakaran, Jeshuwin; Carnevali, Paolo; Yang, Jianzhi; Rhie, Arang; Scholz, Sonja W.; Traynor, Bryan J.; Miga, Karen H.; Jain, Miten; Timp, Winston; Phillippy, Adam M.; Chaisson, Mark; Sedlazeck, Fritz J.; Blauwendraat, Cornelis; Paten, Benedict 分享 收藏
Pangenome graph construction from genome alignments with Minigraph-Cactus 用minigrap-cactus从基因组比对构建Pangenome图 Hickey, Glenn; Monlong, Jean; Ebler, Jana; Novak, Adam M.; Eizenga, Jordan M.; Gao, Yan; Marschall, Tobias; Li, Heng; Paten, Benedict; Abel, Haley J.; Antonacci-Fulton, Lucinda L.; Asri, Mobin; Baid, Gunjan; Baker, Carl A.; Belyaeva, Anastasiya; Billis, Konstantinos; Bourque, Guillaume; Buonaiuto, Silvia; Carroll, Andrew; Chaisson, Mark J. P.; Chang, Pi-Chuan; Chang, Xian H.; Cheng, Haoyu; Chu, Justin; Cody, Sarah; Colonna, Vincenza; Cook, Daniel E.; Cook-Deegan, Robert M.; Cornejo, Omar E.; Diekhans, Mark; Doerr, Daniel; Ebert, Peter; Ebler, Jana; Eichler, Evan E.; Eizenga, Jordan M.; Fairley, Susan; Fedrigo, Olivier; Felsenfeld, Adam L.; Feng, Xiaowen; Fischer, Christian; Flicek, Paul; Formenti, Giulio; Frankish, Adam; Fulton, Robert S.; Gao, Yan; Garg, Shilpa; Garrison, Erik; Garrison, Nanibaa' A.; Giron, Carlos Garcia; Green, Richard E.; Groza, Cristian; Guarracino, Andrea; Haggerty, Leanne; Hall, Ira M.; Harvey, William T.; Haukness, Marina; Haussler, David; Heumos, Simon; Hickey, Glenn; Hoekzema, Kendra; Hourlier, Thibaut; Howe, Kerstin; Jain, Miten; Jarvis, Erich D.; Ji, Hanlee P.; Kenny, Eimear E.; Koenig, Barbara A.; Kolesnikov, Alexey; Korbel, Jan O.; Kordosky, Jennifer; Koren, Sergey; Lee, HoJoon; Lewis, Alexandra P.; Liao, Wen-Wei; Lu, Shuangjia; Lu, Tsung-Yu; Lucas, Julian K.; Hugo, Magalhaes; Santiago, Marco-Sola; Marijon, Pierre; Markello, Charles; Marschall, Tobias; Martin, Fergal J.; McCartney, Ann; McDaniel, Jennifer; Miga, Karen H.; Mitchell, Matthew W.; Monlong, Jean; Mountcastle, Jacquelyn; Munson, Katherine M.; Mwaniki, Moses Njagi; Nattestad, Maria; Novak, Adam M.; Nurk, Sergey; Olsen, Hugh E.; Olson, Nathan D.; Pesout, Trevor; Phillippy, Adam M.; Popejoy, Alice B.; Porubsky, David; Prins, Pjotr; Puiu, Daniela; Rautiainen, Mikko; Regier, Allison A.; Rhie, Arang; Sacco, Samuel; Sanders, Ashley D.; Schneider, Valerie A.; Schultz, Baergen, I; Shafin, Kishwar; Sibbesen, Jonas A.; Siren, Jouni; Smith, Michael W.; Sofia, Heidi J.; Abou Tayoun, Ahmad N.; Thibaud-Nissen, Francoise; Tomlinson, Chad; Tricomi, Francesca Floriana; Villani, Flavia; Vollger, Mitchell R.; Wagner, Justin; Walenz, Brian; Wang, Ting; Wood, Jonathan M. D.; Zimin, Aleksey, V; Zook, Justin M. 分享 收藏
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A chromosome-level reference genome and pangenome for barn swallow population genomics Secomandi, Simona; Gallo, Guido R.; Sozzoni, Marcella; Iannucci, Alessio; Galati, Elena; Abueg, Linelle; Balacco, Jennifer; Caprioli, Manuela; Chow, William; Ciofi, Claudio; Collins, Joanna; Fedrigo, Olivier; Ferretti, Luca; Fungtammasan, Arkarachai; Haase, Bettina; Howe, Kerstin; Kwak, Woori; Lombardo, Gianluca; Masterson, Patrick; Messina, Graziella; Moller, Anders P.; Mountcastle, Jacquelyn; Mousseau, Timothy A.; Obiol, Joan Ferrer; Olivieri, Anna; Rhie, Arang; Rubolini, Diego; Saclier, Marielle; Stanyon, Roscoe; Stucki, David; Thibaud-Alquati, Francoise; Torrance, James; Torroni, Antonio; Weber, Kristina; Ambrosini, Roberto; Bonisoli-Alquati, Andrea; Jarvis, Erich D.; Gianfranceschi, Luca; Formenti, Giulio 分享 收藏
False gene and chromosome losses in genome assemblies caused by GC content variation and repeats Kim, Juwan; Lee, Chul; Ko, Byung June; Yoo, Dong Ahn; Won, Sohyoung; Phillippy, Adam M.; Fedrigo, Olivier; Zhang, Guojie; Howe, Kerstin; Wood, Jonathan; Durbin, Richard; Formenti, Giulio; Brown, Samara; Cantin, Lindsey; Mello, Claudio V.; Cho, Seoae; Rhie, Arang; Kim, Heebal; Jarvis, Erich D. 分享 收藏
Widespread false gene gains caused by duplication errors in genome assemblies 由基因组组装中的重复错误引起的广泛的假基因获得 Ko, Byung June; Lee, Chul; Kim, Juwan; Rhie, Arang; Yoo, Dong Ahn; Howe, Kerstin; Wood, Jonathan; Cho, Seoae; Brown, Samara; Formenti, Giulio; Jarvis, Erich D.; Kim, Heebal 分享 收藏
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Merfin: improved variant filtering, assembly evaluation and polishing via k-mer validation Merfin: 通过k-mer验证改进变体过滤、装配评估和抛光 Formenti, Giulio; Rhie, Arang; Walenz, Brian P.; Thibaud-Nissen, Francoise; Shafin, Kishwar; Koren, Sergey; Myers, Eugene W.; Jarvis, Erich D.; Phillippy, Adam M. 分享 收藏
Chasing perfection: validation and polishing strategies for telomere-to-telomere genome assemblies 追求完美: 端粒到端粒基因组组装的验证和抛光策略 Cartney, Ann M. Mc; Shafin, Kishwar; Alonge, Michael; Bzikadze, Andrey, V; Formenti, Giulio; Fungtammasan, Arkarachai; Howe, Kerstin; Jain, Chirag; Koren, Sergey; Logsdon, Glennis A.; Miga, Karen H.; Mikheenko, Alla; Paten, Benedict; Shumate, Alaina; Soto, Daniela C.; Sovic, Ivan; Wood, Jonathan Md; Zook, Justin M.; Phillippy, Adam M.; Rhie, Arang 分享 收藏
Standards recommendations for the Earth BioGenome Project Lawniczak, Mara K. N.; Durbin, Richard; Flicek, Paul; Lindblad-Toh, Kerstin; Wei, Xiaofeng; Archibald, John M.; Baker, William J.; Belov, Katherine; Blaxter, Mark L.; Bonet, Tomas Marques; Childers, Anna K.; Coddington, Jonathan A.; Crandall, Keith A.; Crawford, Andrew J.; Davey, Robert P.; Di Palma, Federica; Fang, Qi; Haerty, Wilfried; Hall, Neil; Hoff, Katharina J.; Howe, Kerstin; Jarvis, Erich D.; Johnson, Warren E.; Johnson, Rebecca N.; Kersey, Paul J.; Liu, Xin; Lopez, Jose Victor; Myers, Eugene W.; Pettersson, Olga Vinnere; Phillippy, Adam M.; Poelchau, Monica F.; Pruitt, Kim D.; Rhie, Arang; Castilla-Rubio, Juan Carlos; Sahu, Sunil Kumar; Salmon, Nicholas A.; Soltis, Pamela S.; Swarbreck, David; Thibaud-Nissen, Francoise; Wang, Sibo; Wegrzyn, Jill L.; Zhang, Guojie; Zhang, He; Lewin, Harris A.; Richards, Stephen 分享 收藏
Population genomics of the critically endangered kakapo Dussex, Nicolas; van der Valk, Tom; Morales, Hernan E.; Wheat, Christopher W.; Diez-del-Molino, David; von Seth, Johanna; Foster, Yasmin; Kutschera, Verena E.; Guschanski, Katerina; Rhie, Arang; Phillippy, Adam M.; Korlach, Jonas; Howe, Kerstin; Chow, William; Pelan, Sarah; Damas, Joanna D. Mendes; Lewin, Harris A.; Hastie, Alex R.; Formenti, Giulio; Fedrigo, Olivier; Guhlin, Joseph; Harrop, Thomas W. R.; Lec, Marissa F. Le; Dearden, Peter K.; Haggerty, Leanne; Martin, Fergal J.; Kodali, Vamsi; Thibaud-Nissen, Francoise; Iorns, David; Knapp, Michael; Gemmell, Neil J.; Robertson, Fiona; Moorhouse, Ron; Digby, Andrew; Eason, Daryl; Vercoe, Deidre; Howard, Jason; Jarvis, Erich D.; Robertson, Bruce C.; Dalen, Love 分享 收藏
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