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Addressing persistent challenges in digital image analysis of cancer tissue: resources developed from a hackathon Prabhakaran, Sandhya; Yapp, Clarence; Baker, Gregory J.; Beyer, Johanna; Chang, Young Hwan; Creason, Allison L.; Krueger, Robert; Muhlich, Jeremy; Patterson, Nathan Heath; Sidak, Kevin; Sudar, Damir; Taylor, Adam J.; Ternes, Luke; Troidl, Jakob; Yubin, Xie; Sokolov, Artem; Tyson, Darren R. 分享 收藏
MAMS: matrix and analysis metadata standards to facilitate harmonization and reproducibility of single-cell data Sarfraz, Irzam; Wang, Yichen; Shastry, Amulya; Teh, Wei Kheng; Sokolov, Artem; Herb, Brian R.; Creasy, Heather H.; Virshup, Isaac; Dries, Ruben; Degatano, Kylee; Mahurkar, Anup; Schnell, Daniel J.; Madrigal, Pedro; Hilton, Jason; Gehlenborg, Nils; Tickle, Timothy; Campbell, Joshua D. 分享 收藏
Metabolic modulation of mitochondrial mass during CD4+T cell activation Kurmi, Kiran; Liang, Dan; van de Ven, Robert; Georgiev, Peter; Gassaway, Brandon Mark; Han, Seongjun; Notarangelo, Giulia; Harris, Isaac S.; Yao, Cong-Hui; Park, Joon Seok; Hu, Song-Hua; Peng, Jingyu; Drijvers, Jefte M.; Boswell, Sarah; Sokolov, Artem; Dougan, Stephanie K.; Sorger, Peter K.; Gygi, Steven P.; Sharpe, Arlene H.; Haigis, Marcia C. 分享 收藏
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Causal inference in medical records and complementary systems pharmacology for metformin drug repurposing towards dementia Charpignon, Marie-Laure; Vakulenko-Lagun, Bella; Zheng, Bang; Magdamo, Colin; Su, Bowen; Evans, Kyle; Rodriguez, Steve; Sokolov, Artem; Boswell, Sarah; Sheu, Yi-Han; Somai, Melek; Middleton, Lefkos; Hyman, Bradley T.; Betensky, Rebecca A.; Finkelstein, Stan N.; Welsch, Roy E.; Tzoulaki, Ioanna; Blacker, Deborah; Das, Sudeshna; Albers, Mark W. 分享 收藏
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Early on-treatment transcriptional profiling as a tool for improving pathological response prediction in HER2-positive inflammatory breast cancer Pernas, Sonia; Guerriero, Jennifer L.; Naumenko, Sergey; Goel, Shom; Regan, Meredith M.; Hu, Jiani; Harrison, Beth T.; Lynce, Filipa; Lin, Nancy U.; Partridge, Ann; Morikawa, Aki; Hutchinson, John; Mittendorf, Elizabeth A.; Sokolov, Artem; Overmoyer, Beth 分享 收藏
MITI minimum information guidelines for highly multiplexed tissue images MITI高度复用组织图像的最小信息指南 Schapiro, Denis; Yapp, Clarence; Sokolov, Artem; Reynolds, Sheila M.; Chen, Yu-An; Sudar, Damir; Xie, Yubin; Muhlich, Jeremy; Arias-Camison, Raquel; Arena, Sarah; Taylor, Adam J.; Nikolov, Milen; Tyler, Madison; Lin, Jia-Ren; Burlingame, Erik A.; Chang, Young H.; Farhi, Samouil L.; Thorsson, Vesteinn; Venkatamohan, Nithya; Drewes, Julia L.; Pe'er, Dana; Gutman, David A.; Herrmann, Markus D.; Gehlenborg, Nils; Bankhead, Peter; Roland, Joseph T.; Herndon, John M.; Snyder, Michael P.; Angelo, Michael; Nolan, Garry; Swedlow, Jason R.; Schultz, Nikolaus; Merrick, Daniel T.; Mazzili, Sarah A.; Cerami, Ethan; Rodig, Scott J.; Santagata, Sandro; Sorger, Peter K. 分享 收藏
Quality at a Glance: An Audit of Web-Crawled Multilingual Datasets Kreutzer, Julia; Caswell, Isaac; Wang, Lisa; Wahab, Ahsan; van Esch, Daan; Ulzii-Orshikh, Nasanbayar; Tapo, Allahsera; Subramani, Nishant; Sokolov, Artem; Sikasote, Claytone; Setyawan, Monang; Sarin, Supheakmungkol; Samb, Sokhar; Sagot, Benoit; Rivera, Clara; Rios, Annette; Papadimitriou, Isabel; Osei, Salomey; Ortiz Suarez, Pedro; Orife, Iroro; Ogueji, Kelechi; Rubungo, Andre Niyongabo; Nguyen, Toan Q.; Mueller, Mathias; Mueller, Andre; Hassan Muhammad, Shamsuddeen; Muhammad, Nanda; Mnyakeni, Ayanda; Mirzakhalov, Jamshidbek; Matangira, Tapiwanashe; Leong, Colin; Lawson, Nze; Kudugunta, Sneha; Jernite, Yacine; Jenny, Mathias; Firat, Orhan; Dossou, Bonaventure F. P.; Dlamini, Sakhile; de Silva, Nisansa; Balli, Sakine Cabuk; Biderman, Stella; Battisti, Alessia; Baruwa, Ahmed; Bapna, Ankur; Baljekar, Pallavi; Abebe Azime, Israel; Awokoya, Ayodele; Ataman, Duygu; Ahia, Orevaoghene; Ahia, Oghenefego; Agrawal, Sweta; Adeyemi, Mofetoluwa 分享 收藏
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MCMICRO: a scalable, modular image-processing pipeline for multiplexed tissue imaging MCMICRO: 用于多路组织成像的可扩展的模块化图像处理流水线 Schapiro, Denis; Sokolov, Artem; Yapp, Clarence; Chen, Yu-An; Muhlich, Jeremy L.; Hess, Joshua; Creason, Allison L.; Nirmal, Ajit J.; Baker, Gregory J.; Nariya, Maulik K.; Lin, Jia-Ren; Maliga, Zoltan; Jacobson, Connor A.; Hodgman, Matthew W.; Ruokonen, Juha; Farhi, Samouil L.; Abbondanza, Domenic; McKinley, Eliot T.; Persson, Daniel; Betts, Courtney; Sivagnanam, Shamilene; Regev, Aviv; Goecks, Jeremy; Coffey, Robert J.; Coussens, Lisa M.; Santagata, Sandro; Sorger, Peter K. 分享 收藏
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Machine learning identifies candidates for drug repurposing in Alzheimer's disease 机器学习确定阿尔茨海默病药物再利用的候选者 Rodriguez, Steve; Hug, Clemens; Todorov, Petar; Moret, Nienke; Boswell, Sarah A.; Evans, Kyle; Zhou, George; Johnson, Nathan T.; Hyman, Bradley T.; Sorger, Peter K.; Albers, Mark W.; Sokolov, Artem 分享 收藏
A serum-based DNA methylation assay provides accurate detection of glioma Sabedot, Thais S.; Malta, Tathiane M.; Snyder, James; Nelson, Kevin; Wells, Michael; DeCarvalho, Ana C.; Mukherjee, Abir; Chitale, Dhananjay A.; Mosella, Maritza S.; Sokolov, Artem; Asmaro, Karam P.; Robin, Adam; Rosenblum, Mark L.; Mikkelsen, Tom; Rock, Jack; Poisson, Laila M.; Lee, Ian; Walbert, Tobias; Kalkanis, Steven; Iavarone, Antonio; Castro, Ana Valeria; Noushmehr, Houtan 分享 收藏
A Community Challenge for Inferring Genetic Predictors of Gene Essentialities through Analysis of a Functional Screen of Cancer Cell Lines Gonen, Mehmet; Weir, Barbara A.; Cowley, Glenn S.; Vazquez, Francisca; Guan, Yuanfang; Jaiswal, Alok; Karasuyama, Masayuki; Uzunangelov, Vladislav; Wang, Tao; Tsherniak, Aviad; Howell, Sara; Marbach, Daniel; Hoff, Bruce; Norman, Thea C.; Airola, Antti; Bivol, Adrian; Bunte, Kerstin; Carlin, Daniel; Chopra, Sahil; Deran, Alden; Ellrott, Kyle; Gopalacharyulu, Peddinti; Graim, Kiley; Kaski, Samuel; Khan, Suleiman A.; Newton, Yulia; Ng, Sam; Pahikkala, Tapio; Paull, Evan; Sokolov, Artem; Tang, Hao; Tang, Jing; Wennerberg, Krister; Xie, Yang; Zhan, Xiaowei; Zhu, Fan; Aittokallio, Tero; Mamitsuka, Hiroshi; Stuart, Joshua M.; Boehm, Jesse S.; Root, David E.; Xiao, Guanghua; Stolovitzky, Gustavo; Hahn, William C.; Margolin, Adam A. 分享 收藏
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