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N

Niko Beerenwinkel

Department of Biosystems Science and Engineering

70H指数
498论文数
2.4W被引数
收录论文 137
发表时间
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Benchmarking large language models for HIV medical decision support评估大型语言模型在HIV医学决策支持中的应用
errCommunications Medicine
IF6.3
err2026-08-29
err0
errOAAI
errGonzalo Cardenal-Antolin; Jacques Fellay; Bashkim Jaha; Huldrych F. Günthard; Johannes Nemeth; Roger Kouyos; Niko Beerenwinkel; Diane Duroux
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A tumor profiling resource for ovarian cancer: insights into chemotherapy-driven heterogeneity and personalized treatment strategy卵巢癌肿瘤谱分析资源：化疗驱动的异质性及个性化治疗策略的洞见
errNature Communications
IF15.7
err2026-07-13
err0
errOAAI
errFrancis Jacob; Rebekka Wegmann; Joanna Ficek-Pascual; Ulrike Lischetti; Jack Kuipers; Stéphane Chevrier; Michael Prummer; Nora C. Toussaint; Ilaria Alborelli; Ricardo Coelho; Ruben Casanova; Sandra Goetze; Gabriele Gut; Monica-Andreea Baciu-Drăgan; Anne Bertolini; Ximena Bonilla; Jon Brugger; Magdalena M. Brune; Byron Calgua; Stefanie Engler; Cinzia Esposito; Pedro F. Ferreira; Andrea Jacobs; Flavio C. Lombardo; Paola Malsot; Julien Mena; Nicola Miglino; Emanuela S. Milani; Jacobo Sarabia Del Castillo; Sujana Sivapatham; Bettina A. Sobottka-Brillout; Tanmay Tanna; Tibor A. Zwimpfer; Rudolf Aebersold; Marina Bacac; Niko Beerenwinkel; Christian Beisel; Bernd Bodenmiller; Viktor H. Koelzer; Kjong-Van Lehmann; Mitchell P. Levesque; Holger Moch; Simone Muenst; Lucas Pelkmans; Markus G. Manz; Gunnar Rätsch; Franziska Singer; Berend Snijder; Alexandre P. A. Theocharides; Markus Tolnay; Andreas Wicki; Bernd Wollscheid; Viola Heinzelmann-Schwarz
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Wastewater-based sequencing of respiratory syncytial virus to investigate lineage dynamics and antigenic site mutations: a retrospective genomic epidemiology study基于废水测序的呼吸道合胞病毒株系动力学及抗原位点突变研究：一项回顾性基因组流行病学研究
errLancet Microbe
IF20.4
err2026-06-11
err0
errOAAI
errJolinda de Korne-Elenbaas; Auguste Rimaite; Ivan Topolsky; David Dreifuss; Charlyne Bürki; Lara Fuhrmann; Louis du Plessis; William J Fitzsimmons; Emily E Bendall; Tanja Stadler; Niko Beerenwinkel; Timothy R Julian
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Learning and forecasting selection dynamics of SARS-CoV-2 variants from wastewater sequencing data using Covvfit利用Covvfit从废水测序数据中学习和预测SARS-CoV-2变体的选择动态
errWater Research
IF12.4
err2026-04-28
err0
errOAAI
errDavid Dreifuss; Paweł Czyż; Niko Beerenwinkel
err分享
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Unifying non-Markovian dynamics and agent heterogeneity in scalable stochastic networks统一非马尔可夫动态与智能体异质性在可扩展随机网络中
errNature Communications
IF15.7
err2026-03-02
err0
errOAAI
errAurélien Pélissier; Miroslav Phan; Didier Le Bail; Niko Beerenwinkel; María Rodríguez Martínez
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Generalizable machine learning models for rapid antimicrobial resistance prediction in unseen healthcare settings
errGigaScience
IF3.9
err2026-01-19
err0
errOAAI
errDiane Duroux; Paul P Meyer; Giovanni Visoná; Niko Beerenwinkel
err分享
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SARS-CoV-2 wastewater genomic surveillance: approaches, challenges, and opportunitiesSARS-CoV-2废水基因组监测: 方法、挑战和机遇
errGenome Biology
IF9.4
err2026-01-12
err0
errOAAI
errViorel Munteanu; Michael A. Saldana; David Dreifuss; Wenhao O. Ouyang; Jannatul Ferdous; Fatemeh Mohebbi; Jessica Schlueter Roseberry; Dumitru Ciorba; Viorel Bostan; Victor Gordeev; Nicolae Drabcinski; Justin Maine Su; Nadiia Kasianchuk; Nitesh Kumar Sharma; Sergey Knyazev; Eva Aßmann; Andrei Lobiuc; Mihai Covasa; Keith A. Crandall; Nicholas C. Wu; Christopher E. Mason; Braden T. Tierney; Alexander G. Lucaci; Roel A. Ophoff; Cynthia Gibas; Piotr Rzymski; Pavel Skums; Helena Solo-Gabriele; Beerenwinkel Niko; Alex Zelikovsky; Martin Hölzer; Adam Smith; Serghei Mangul
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mhn : a Python package for analyzing cancer progression with Mutual Hazard Networksmhn：一个用于利用相互风险网络分析癌症进展的Python软件包
errBioinformatics Advances
IF2.8
err2026-01-01
err0
errOAAI
errVocht, Stefan; Hu, Yanren Linda; Losch, Andreas; Rupp, Kevin; Wettig, Tilo; Grasedyck, Lars; Beerenwinkel, Niko; Spang, Rainer; Schill, Rudolf
err分享
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Ovarian cancer metastasis to the human omentum disrupts organ homeostasis and induces fundamental tissue reprogramming卵巢癌转移到人类大网膜会破坏器官稳态并诱导基本组织重编程
errNature Communications
IF15.7
err2025-12-16
err0
errOAAI
errUlrike Lischetti; Ching-Yeu Liang; Matteo Carrara; Ricardo Coelho; Antoine Hanns; Flavio Lombardo; Arthur Dondi; Sandra Goetze; Michal Hensler; Christian Kurzeder; Céline Montavon; Jitka Fucikova; Franziska Singer; Niko Beerenwinkel; Christian Beisel; Viola Heinzelmann-Schwarz; Francis Jacob
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A recurrent adaptive mutation in the transmembrane 2B protein of an insect picorna-like virus in a nonnative host一种昆虫picorna-like病毒在非宿主中的跨膜2B蛋白的复现适应性突变
errJournal of Virology
IF3.8
err2025-12-01
err0
PREAI
errLezcano, Oscar M.; Fuhrmann, Lara; Bos, Reinder T.; Wang, Haitao; Stevens, Milou; Beerenwinkel, Niko; Huynen, Martijn A.; van Rij, Ronald P.
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DelSIEVE: cell phylogeny modeling of single nucleotide variants and deletions from single-cell DNA sequencing dataDelSIEVE：基于单细胞DNA测序数据的单核苷酸变异和缺失的细胞谱系建模
errGenome Biology
IF9.4
err2025-08-29
err0
errOAAI
errSenbai Kang; Nico Borgsmüller; Monica Valecha; Magda Markowska; Jack Kuipers; Niko Beerenwinkel; David Posada; Ewa Szczurek
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Characterizing influenza A virus lineages and clinically relevant mutations through high-coverage wastewater sequencing通过高覆盖度废水测序表征流感A病毒谱系和临床相关突变
errWater Research
IF12.4
err2025-08-21
err0
PREAI
errAnika John; Seju Kang; Lara Fuhrmann; Ivan Topolsky; Christopher Kent; Joshua Quick; Tanja Stadler; Timothy R. Julian; Niko Beerenwinkel
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Estimated transmission dynamics of SARS-CoV-2 variants from wastewater are unbiased and robust to differential shedding污水估算的SARS-CoV-2变种传播动力学是无偏的，并且对差异排泌具有鲁棒性。
errNature Communications
IF15.7
err2025-08-12
err0
errOAAI
errDavid Dreifuss; Jana S. Huisman; Johannes C. Rusch; Lea Caduff; Pravin Ganesanandamoorthy; Alexander J. Devaux; Charles Gan; Tanja Stadler; Tamar Kohn; Christoph Ort; Niko Beerenwinkel; Timothy R. Julian
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Publisher Correction: Feasibility of multiomics tumor profiling for guiding treatment of melanoma出版者更正：多组学肿瘤分析在指导黑色素瘤治疗中的可行性
errNature Medicine
IF50
err2025-08-01
err0
errOAAI
errNicola Miglino; Nora C. Toussaint; Alexander Ring; Ximena Bonilla; Marina Tusup; Benedict Gosztonyi; Tarun Mehra; Gabriele Gut; Francis Jacob; Stephane Chevrier; Kjong-Van Lehmann; Ruben Casanova; Andrea Jacobs; Sujana Sivapatham; Laura Boos; Parisa Rahimzadeh; Manuel Schuerch; Bettina Sobottka; Natalia Chicherova; Shuqing Yu; Rebekka Wegmann; Julien Mena; Emanuela S. Milani; Sandra Goetze; Cinzia Esposito; Jacobo Sarabia del Castillo; Anja L. Frei; Marta Nowak; Anja Irmisch; Jack Kuipers; Monica-Andreea Baciu-Drăgan; Pedro F. Ferreira; Franziska Singer; Anne Bertolini; Michael Prummer; Ulrike Lischetti; Rudolf Aebersold; Marina Bacac; Gerd Maass; Holger Moch; Michael Weller; Alexandre P. A. Theocharides; Markus G. Manz; Niko Beerenwinkel; Christian Beisel; Lucas Pelkmans; Berend Snijder; Bernd Wollscheid; Viola Heinzelmann; Bernd Bodenmiller; Mitchell P. Levesque; Viktor H. Koelzer; Gunnar Rätsch; Reinhard Dummer; Andreas Wicki
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Bayesian inference of fitness landscapes via tree-structured branching processes基于树状分支过程的适应性景观贝叶斯推断
errBIOINFORMATICS
IF5.4
err2025-07-01
err0
errOAAI
errLuo, Xiang Ge; Kuipers, Jack; Rupp, Kevin; Takahashi, Koichi; Beerenwinkel, Niko
err分享
err收藏
Network-based clustering unveils interconnected landscapes of genomic and clinical features across myeloid malignancies基于网络的聚类揭示了髓系恶性肿瘤中基因组与临床特征相互关联的景观。
errNATURE COMMUNICATIONS
IF15.7
err2025-04-30
err0
errOAAI
errBayer, Fritz; Roncador, Marco; Moffa, Giusi; Morita, Kiyomi; Takahashi, Koichi; Beerenwinkel, Niko; Kuipers, Jack
err分享
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Assessing different next-generation sequencing technologies for wastewater-based epidemiology
errWATER RESEARCH
IF12.4
err2024-12-01
err0
errOAAI
errJohn, Anika; Dreifuss, David; Kang, Seju; Bratus-Neuenschwander, Anna; Zajac, Natalia; Topolsky, Ivan; Dondi, Arthur; Aquino, Catharine; Julian, Timothy R.; Beerenwinkel, Niko
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VILOCA: sequencing quality-aware viral haplotype reconstruction and mutation calling for short-read and long-read data
errgenomics proteomics bioinformatics
IF2.8
err2024-11-28
err0
errOAAI
errFuhrmann, Lara; Langer, Benjamin; Topolsky, Ivan; Beerenwinkel, Niko
err分享
err收藏
MDS-AML Aggregative Risk Classification System ( MARCS ): A Novel, Enhanced Risk Stratification System Derived from the Combined Unsupervised Analysis of 7,480 MDS and AML PatientsMDS-AML聚集性风险评估系统（MARCS）：一种基于7,480例MDS和AML患者联合无监督分析的新型、增强型风险评估系统
errBLOOD
IF23.1
err2024-11-05
err0
PREAI
errRoncador, Marco; Bayer, Fritz; Deuel, Jeremy W.; Kuipers, Jack; Manz, Markus G.; Boettcher, Steffen; Beerenwinkel, Niko; Balabanov, Stefan
err分享
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V-pipe 3.0: a sustainable pipeline for within-sample viral genetic diversity estimation
errGIGASCIENCE
IF3.9
err2024-09-30
err1
errOAAI
errFuhrmann, Lara; Jablonski, Kim Philipp; Topolsky, Ivan; Batavia, Aashil A.; Borgsmueller, Nico; Baykal, Pelin Icer; Carrara, Matteo; Chen, Chaoran; Dondi, Arthur; Dragan, Monica; Dreifuss, David; John, Anika; Langer, Benjamin; Okoniewski, Michal; du Plessis, Louis; Schmitt, Uwe; Singer, Franziska; Stadler, Tanja; Beerenwinkel, Niko
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研究方向

暂无研究方向
合作学者
合作期刊
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H 指数: 179 · 论文数: 3.6K
A
Andreas von Deimling
H 指数: 175 · 论文数: 1.8K
M
Martin A. Nowak
H 指数: 160 · 论文数: 700
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