Vikram Agarwal - Publications, H-index & Citations

Vikram Agarwal

sanofi

23H指数

54论文数

1.1W被引数

收录论文 16

发表时间

Decoding the language of messenger RNA 解码信使RNA的语言

Nature Methods

IF32.1

2026-04-17

PREAI

Jun Wang; Dinghai Zheng; Vikram Agarwal

Predicting the translation efficiency of messenger RNA in mammalian cells 预测哺乳动物细胞中信使RNA的翻译效率

Nature Biotechnology

IF41.7

2025-07-25

OAAI

Dinghai Zheng; Logan Persyn; Jun Wang; Yue Liu; Fernando Ulloa-Montoya; Can Cenik; Vikram Agarwal

mRNA-LM: full-length integrated SLM for mRNA analysis mRNA-LM：用于mRNA分析的完整长度集成SLM

NUCLEIC ACIDS RESEARCH

IF13.1

2025-02-03

OAAI

Li, Sizhen; Noroozizadeh, Shahriar; Moayedpour, Saeed; Kogler-Anele, Lorenzo; Xue, Zexin; Zheng, Dinghai; Montoya, Fernando Ulloa; Agarwal, Vikram; Jager, Sven

CodonBERT large language model for mRNA vaccines mRNA疫苗的CodonBERT大语言模型

GENOME RESEARCH

IF5.5

2024-07-01

PREAI

Li, Sizhen; Moayedpour, Saeed; Li, Ruijiang; Bailey, Michael; Riahi, Saleh; Kogler-Anele, Lorenzo; Miladi, Milad; Miner, Jacob; Pertuy, Fabien; Zheng, Dinghai; Wang, Jun; Balsubramani, Akshay; Tran, Khang; Zacharia, Minnie; Wu, Monica; Gu, Xiaobo; Clinton, Ryan; Asquith, Carla; Skaleski, Joseph; Boeglin, Lianne; Chivukula, Sudha; Dias, Anusha; Strugnell, Tod; Montoya, Fernando Ulloa; Agarwal, Vikram; Bar-Joseph, Ziv; Jager, Sven

Transcription factor binding site orientation and order are major drivers of gene regulatory activity 转录因子结合位点的方向和顺序是基因调控活性的主要驱动因素

NATURE COMMUNICATIONS

IF15.7

2023-04-22

OAAI

Georgakopoulos-Soares, Ilias; Deng, Chengyu; Agarwal, Vikram; Chan, Candace S. Y.; Zhao, Jingjing; Inoue, Fumitaka; Ahituv, Nadav

The genetic and biochemical determinants of mRNA degradation rates in mammals 哺乳动物mRNA降解速率的遗传和生化决定因素

GENOME BIOLOGY

IF9.4

2022-11-23

OAAI

Agarwal, Vikram; Kelley, David R.

High-throughput characterization of the role of non-B DNA motifs on promoter function

CELL GENOMICS

IF9

2022-04-01

OAAI

Georgakopoulos-Soares, Ilias; Victorino, Jesus; Parada, Guillermo E.; Agarwal, Vikram; Zhao, Jingjing; Wong, Hei Yuen; Umar, Mubarak Ishaq; Elor, Orry; Muhwezi, Allan; An, Joon-Yong; Sanders, Stephan J.; Kwok, Chun Kit; Inoue, Fumitaka; Hemberg, Martin; Ahituv, Nadav

Effective gene expression prediction from sequence by integrating long-range interactions 通过整合长程相互作用从序列中有效预测基因表达

NATURE METHODS

IF32.1

2021-10-04

411

OAAI

Avsec, Ziga; Agarwal, Vikram; Visentin, Daniel; Ledsam, Joseph R.; Grabska-Barwinska, Agnieszka; Taylor, Kyle R.; Assael, Yannis; Jumper, John; Kohli, Pushmeet; Kelley, David R.

The landscape of alternative polyadenylation in single cells of the developing mouse embryo

NATURE COMMUNICATIONS

IF15.7

2021-08-24

OAAI

Agarwal, Vikram; Lopez-Darwin, Sereno; Kelley, David R.; Shendure, Jay

Genome-wide strand asymmetry in massively parallel reporter activity favors genic strands

GENOME RESEARCH

IF5.5

2021-04-20

OAAI

Roberts, Brian S.; Partridge, E. Christopher; Moyers, Bryan A.; Agarwal, Vikram; Newberry, Kimberly M.; Martin, Beth K.; Shendure, Jay; Myers, Richard M.; Cooper, Gregory M.

lentiMPRA and MPRAflow for high-throughput functional characterization of gene regulatory elements (vol 15, 2387, 2020)

NATURE PROTOCOLS

IF16

2020-10-30

OAAI

Gordon, M. Grace; Inoue, Fumitaka; Martin, Beth; Schubach, Max; Agarwal, Vikram; Whalen, Sean; Feng, Shiyun; Zhao, Jingjing; Ashuach, Tal; Ziffra, Ryan; Kreimer, Anat; Georgakopoulos-Soares, Ilias; Yosef, Nir; Ye, Chun Jimmie; Pollard, Katherine S.; Shendure, Jay; Kircher, Martin; Ahituv, Nadav

A systematic evaluation of the design and context dependencies of massively parallel reporter assays 大规模平行报告分析的设计和上下文依赖性的系统评估

NATURE METHODS

IF32.1

2020-10-12

116

OAAI

Klein, Jason C.; Agarwal, Vikram; Inoue, Fumitaka; Keith, Aidan; Martin, Beth; Kircher, Martin; Ahituv, Nadav; Shendure, Jay

lentiMPRA and MPRAflow for high-throughput functional characterization of gene regulatory elements lentiMPRA和MPRAflow用于基因调控元件的高通量功能表征

NATURE PROTOCOLS

IF16

2020-07-08

OAAI

Gordon, M. Grace; Inoue, Fumitaka; Martin, Beth; Schubach, Max; Agarwal, Vikram; Whalen, Sean; Feng, Shiyun; Zhao, Jingjing; Ashuach, Tal; Ziffra, Ryan; Kreimer, Anat; Georgakopoulous-Soares, Ilias; Yosef, Nir; Ye, Chun Jimmie; Pollard, Katherine S.; Shendure, Jay; Kircher, Martin; Ahituv, Nadav

Functional testing of thousands of osteoarthritis-associated variants for regulatory activity

NATURE COMMUNICATIONS

IF15.7

2019-06-04

OAAI

Klein, Jason C.; Keith, Aidan; Rice, Sarah J.; Shepherd, Colin; Agarwal, Vikram; Loughlin, John; Shendure, Jay

Functional characterization of enhancer evolution in the primate lineage

GENOME BIOLOGY

IF9.4

2018-07-25

OAAI

Klein, Jason C.; Keith, Aidan; Agarwal, Vikram; Durham, Timothy; Shendure, Jay