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Pangenome graph construction from genome alignments with Minigraph-Cactus 用minigrap-cactus从基因组比对构建Pangenome图 Hickey, Glenn; Monlong, Jean; Ebler, Jana; Novak, Adam M.; Eizenga, Jordan M.; Gao, Yan; Marschall, Tobias; Li, Heng; Paten, Benedict; Abel, Haley J.; Antonacci-Fulton, Lucinda L.; Asri, Mobin; Baid, Gunjan; Baker, Carl A.; Belyaeva, Anastasiya; Billis, Konstantinos; Bourque, Guillaume; Buonaiuto, Silvia; Carroll, Andrew; Chaisson, Mark J. P.; Chang, Pi-Chuan; Chang, Xian H.; Cheng, Haoyu; Chu, Justin; Cody, Sarah; Colonna, Vincenza; Cook, Daniel E.; Cook-Deegan, Robert M.; Cornejo, Omar E.; Diekhans, Mark; Doerr, Daniel; Ebert, Peter; Ebler, Jana; Eichler, Evan E.; Eizenga, Jordan M.; Fairley, Susan; Fedrigo, Olivier; Felsenfeld, Adam L.; Feng, Xiaowen; Fischer, Christian; Flicek, Paul; Formenti, Giulio; Frankish, Adam; Fulton, Robert S.; Gao, Yan; Garg, Shilpa; Garrison, Erik; Garrison, Nanibaa' A.; Giron, Carlos Garcia; Green, Richard E.; Groza, Cristian; Guarracino, Andrea; Haggerty, Leanne; Hall, Ira M.; Harvey, William T.; Haukness, Marina; Haussler, David; Heumos, Simon; Hickey, Glenn; Hoekzema, Kendra; Hourlier, Thibaut; Howe, Kerstin; Jain, Miten; Jarvis, Erich D.; Ji, Hanlee P.; Kenny, Eimear E.; Koenig, Barbara A.; Kolesnikov, Alexey; Korbel, Jan O.; Kordosky, Jennifer; Koren, Sergey; Lee, HoJoon; Lewis, Alexandra P.; Liao, Wen-Wei; Lu, Shuangjia; Lu, Tsung-Yu; Lucas, Julian K.; Hugo, Magalhaes; Santiago, Marco-Sola; Marijon, Pierre; Markello, Charles; Marschall, Tobias; Martin, Fergal J.; McCartney, Ann; McDaniel, Jennifer; Miga, Karen H.; Mitchell, Matthew W.; Monlong, Jean; Mountcastle, Jacquelyn; Munson, Katherine M.; Mwaniki, Moses Njagi; Nattestad, Maria; Novak, Adam M.; Nurk, Sergey; Olsen, Hugh E.; Olson, Nathan D.; Pesout, Trevor; Phillippy, Adam M.; Popejoy, Alice B.; Porubsky, David; Prins, Pjotr; Puiu, Daniela; Rautiainen, Mikko; Regier, Allison A.; Rhie, Arang; Sacco, Samuel; Sanders, Ashley D.; Schneider, Valerie A.; Schultz, Baergen, I; Shafin, Kishwar; Sibbesen, Jonas A.; Siren, Jouni; Smith, Michael W.; Sofia, Heidi J.; Abou Tayoun, Ahmad N.; Thibaud-Nissen, Francoise; Tomlinson, Chad; Tricomi, Francesca Floriana; Villani, Flavia; Vollger, Mitchell R.; Wagner, Justin; Walenz, Brian; Wang, Ting; Wood, Jonathan M. D.; Zimin, Aleksey, V; Zook, Justin M. 分享 收藏
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Merfin: improved variant filtering, assembly evaluation and polishing via k-mer validation Merfin: 通过k-mer验证改进变体过滤、装配评估和抛光 Formenti, Giulio; Rhie, Arang; Walenz, Brian P.; Thibaud-Nissen, Francoise; Shafin, Kishwar; Koren, Sergey; Myers, Eugene W.; Jarvis, Erich D.; Phillippy, Adam M. 分享 收藏
The genomic structure of a human chromosome 22 nucleolar organizer region determined by TAR cloning Kim, Jung-Hyun; Noskov, Vladimir N.; Ogurtsov, Aleksey Y.; Nagaraja, Ramaiah; Petrov, Nikolai; Liskovykh, Mikhail; Walenz, Brian P.; Lee, Hee-Sheung; Kouprina, Natalay; Phillippy, Adam M.; Shabalina, Svetlana A.; Schlessinger, David; Larionov, Vladimir 分享 收藏
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HiCanu: accurate assembly of segmental duplications, satellites, and allelic variants from high-fidelity long reads HiCanu: 从高保真长读段中准确组装片段重复，卫星和等位基因变体 Nurk, Sergey; Walenz, Brian P.; Rhie, Arang; Vollger, Mitchell R.; Logsdon, Glennis A.; Grothe, Robert; Miga, Karen H.; Eichler, Evan E.; Phillippy, Adam M.; Koren, Sergey 分享 收藏
Effect of sequence depth and length in long-read assembly of the maize inbred NC358 序列深度和长度对玉米自交系NC358长序列组装的影响 Ou, Shujun; Liu, Jianing; Chougule, Kapeel M.; Fungtammasan, Arkarachai; Seetharam, Arun S.; Stein, Joshua C.; Llaca, Victor; Manchanda, Nancy; Gilbert, Amanda M.; Wei, Sharon; Chin, Chen-Shan; Hufnagel, David E.; Pedersen, Sarah; Snodgrass, Samantha J.; Fengler, Kevin; Woodhouse, Margaret; Walenz, Brian P.; Koren, Sergey; Phillippy, Adam M.; Hannigan, Brett T.; Dawe, R. Kelly; Hirsch, Candice N.; Hufford, Matthew B.; Ware, Doreen 分享 收藏
Improved reference genome for the domestic horse increases assembly contiguity and composition (vol 1, 197, 2018) Kalbfleisch, Theodore S.; Rice, Edward S.; DePriest, Michael S., Jr.; Walenz, Brian P.; Hestand, Matthew S.; Vermeesch, Joris R.; O'Connell, Brendan L.; Fiddes, Ian T.; Vershinina, Alisa O.; Saremi, Nedda F.; Petersen, Jessica L.; Finno, Carrie J.; Bellone, Rebecca R.; Mccue, Molly E.; Brooks, Samantha A.; Bailey, Ernest; Orlando, Ludovic; Green, Richard E.; Miller, Donald C.; Antczak, Douglas F.; MacLeod, James N. 分享 收藏
Improved reference genome for the domestic horse increases assembly contiguity and composition 改进的家马参考基因组增加了组装的连续性和组成 Kalbfleisch, Theodore S.; Rice, Edward S.; DePriest, Michael S., Jr.; Walenz, Brian P.; Hestand, Matthew S.; Vermeesch, Joris R.; O'Connell, Brendan L.; Fiddes, Ian T.; Vershinina, Alisa O.; Saremi, Nedda F.; Petersen, Jessica L.; Finno, Carrie J.; Bellone, Rebecca R.; McCue, Molly E.; Brooks, Samantha A.; Bailey, Ernest; Orlando, Ludovic; Greene, Richard E.; Miller, Donald C.; Antczak, Douglas F.; MacLeod, James N. 分享 收藏
De novo assembly of haplotype-resolved genomes with trio binning 用三重奏进行单倍型解析基因组的从头组装 Koren, Sergey; Rhie, Arang; Walenz, Brian P.; Dilthey, Alexander T.; Bickhart, Derek M.; Kingan, Sarah B.; Hiendleder, Stefan; Williams, John L.; Smith, Timothy P. L.; Phillippy, Adam M. 分享 收藏
Hybrid assembly with long and short reads improves discovery of gene family expansions Miller, Jason R.; Zhou, Peng; Mudge, Joann; Gurtowski, James; Lee, Hayan; Ramaraj, Thiruvarangan; Walenz, Brian P.; Liu, Junqi; Stupar, Robert M.; Denny, Roxanne; Song, Li; Singh, Namrata; Maron, Lyza G.; McCouch, Susan R.; McCombie, W. Richard; Schatz, Michael C.; Tiffin, Peter; Young, Nevin D.; Silverstein, Kevin A. T. 分享 收藏
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An improved genome assembly uncovers prolific tandem repeats in Atlantic cod Torresen, Ole K.; Star, Bastiaan; Jentoft, Sissel; Reinar, William B.; Grove, Harald; Miller, Jason R.; Walenz, Brian P.; Knight, James; Ekholm, Jenny M.; Peluso, Paul; Edvardsen, Rolf B.; Tooming-Klunderud, Ave; Skage, Morten; Lien, Sigbjorn; Jakobsen, Kjetill S.; Nederbragt, Alexander J. 分享 收藏
Genomic insights into the Ixodes scapularis tick vector of Lyme disease 莱姆病的肩胛骨蜱媒介的基因组洞察 Gulia-Nuss, Monika; Nuss, Andrew B.; Meyer, Jason M.; Sonenshine, Daniel E.; Roe, R. Michael; Waterhouse, Robert M.; Sattelle, David B.; de la Fuente, Jose; Ribeiro, Jose M.; Megy, Karine; Thimmapuram, Jyothi; Miller, Jason R.; Walenz, Brian P.; Koren, Sergey; Hostetler, Jessica B.; Thiagarajan, Mathangi; Joardar, Vinita S.; Hannick, Linda I.; Bidwell, Shelby; Hammond, Martin P.; Young, Sarah; Zeng, Qiandong; Abrudan, Jenica L.; Almeida, Francisca C.; Ayllon, Nieves; Bhide, Ketaki; Bissinger, Brooke W.; Bonzon-Kulichenko, Elena; Buckingham, Steven D.; Caffrey, Daniel R.; Caimano, Melissa J.; Croset, Vincent; Driscoll, Timothy; Gilbert, Don; Gillespie, Joseph J.; Giraldo-Calderon, Gloria I.; Grabowski, Jeffrey M.; Jiang, David; Khalil, Sayed M. S.; Kim, Donghun; Kocan, Katherine M.; Koci, Juraj; Kuhn, Richard J.; Kurtti, Timothy J.; Lees, Kristin; Lang, Emma G.; Kennedy, Ryan C.; Kwon, Hyeogsun; Perera, Rushika; Qi, Yumin; Radolf, Justin D.; Sakamoto, Joyce M.; Sanchez-Gracia, Alejandro; Severo, Maiara S.; Silverman, Neal; Simo, Ladislav; Tojo, Marta; Tornador, Cristian; Van Zee, Janice P.; Vazquez, Jesus; Vieira, Filipe G.; Villar, Margarita; Wespiser, Adam R.; Yang, Yunlong; Zhu, Jiwei; Arensburger, Peter; Pietrantonio, Patricia V.; Barker, Stephen C.; Shao, Renfu; Zdobnov, Evgeny M.; Hauser, Frank; Grimmelikhuijzen, Cornelis J. P.; Park, Yoonseong; Rozas, Julio; Benton, Richard; Pedra, Joao H. F.; Nelson, David R.; Unger, Maria F.; Tubio, Jose M. C.; Tu, Zhijian; Robertson, Hugh M.; Shumway, Martin; Sutton, Granger; Wortman, Jennifer R.; Lawson, Daniel; Wikel, Stephen K.; Nene, Vishvanath M.; Fraser, Claire M.; Collins, Frank H.; Birren, Bruce; Nelson, Karen E.; Caler, Elisabet; Hill, Catherine A. 分享 收藏
The Genome of Anopheles darlingi, the main neotropical malaria vector Marinotti, Osvaldo; Cerqueira, Gustavo C.; Paula de Almeida, Luiz Gonzaga; Tiraboschi Ferro, Maria Ines; da Silva Loreto, Elgion Lucio; Zaha, Arnaldo; Teixeira, Santuza M. R.; Wespiser, Adam R.; Almeida e Silva, Alexandre; Schlindwein, Aline Daiane; Landim Pacheco, Ana Carolina; da Costa da Silva, Artur Luiz; Graveley, Brenton R.; Walenz, Brian P.; Lima, Bruna de Araujo; Gomes Ribeiro, Carlos Alexandre; Nunes-Silva, Carlos Gustavo; de Carvalho, Carlos Roberto; de Almeida Soares, Celia Maria; Afonso de Menezes, Claudia Beatriz; Matiolli, Cleverson; Caffrey, Daniel; Araujo, Demetrius Antonio M.; de Oliveira, Diana Magalhaes; Golenbock, Douglas; Grisard, Edmundo Carlos; Fantinatti-Garboggini, Fabiana; de Carvalho, Fabiola Marques; Barcellos, Fernando Gomes; Prosdocimi, Francisco; May, Gemma; de Azevedo Junior, Gilson Martins; Guimaraes, Giselle Moura; Goldman, Gustavo Henrique; Padilha, Itacio Q. M.; Batista, Jacqueline da Silva; Ferro, Jesus Aparecido; Ribeiro, Jose M. C.; Rangel Fietto, Juliana Lopes; Dabbas, Karina Maia; Cerdeira, Louise; Agnez-Lima, Lucymara Fassarella; Brocchi, Marcelo; de Carvalho, Marcos Oliveira; Teixeira, Marcus de Melo; Diniz Maia, Maria de Mascena; Goldman, Maria Helena S.; Cruz Schneider, Maria Paula; Soares Felipe, Maria Sueli; Hungria, Mariangela; Nicolas, Marisa Fabiana; Pereira, Maristela; Montes, Martin Alejandro; Cantao, Mauricio E.; Vincentz, Michel; Rafael, Miriam Silva; Silverman, Neal; Stoco, Patricia Hermes; Souza, Rangel Celso; Vicentini, Renato; Gazzinelli, Ricardo Tostes; Neves, Rogerio de Oliveira; Silva, Rosane; Astolfi-Filho, Spartaco; Ferreira Maciel, Talles Eduardo; Urmenyi, Turan P.; Tadei, Wanderli Pedro; Camargo, Erney Plessmann; de Vasconcelos, Ana Tereza Ribeiro 分享 收藏
Hybrid error correction and de novo assembly of single-molecule sequencing reads Koren, Sergey; Schatz, Michael C.; Walenz, Brian P.; Martin, Jeffrey; Howard, Jason T.; Ganapathy, Ganeshkumar; Wang, Zhong; Rasko, David A.; McCombie, W. Richard; Jarvis, Erich D.; Phillippy, Adam M. 分享 收藏
Genetic diversity and population structure of the endangered marsupial Sarcophilus harrisii (Tasmanian devil) Miller, Webb; Hayes, Vanessa M.; Ratan, Aakrosh; Petersen, Desiree C.; Wittekindt, Nicola E.; Miller, Jason; Walenz, Brian; Knight, James; Qi, Ji; Zhao, Fangqing; Wang, Qingyu; Bedoya-Reina, Oscar C.; Katiyar, Neerja; Tomsho, Lynn P.; Kasson, Lindsay McClellan; Hardie, Rae-Anne; Woodbridge, Paula; Tindall, Elizabeth A.; Bertelsen, Mads Frost; Dixon, Dale; Pyecroft, Stephen; Helgen, Kristofer M.; Lesk, Arthur M.; Pringle, Thomas H.; Patterson, Nick; Zhang, Yu; Kreiss, Alexandre; Woods, Gregory M.; Jones, Menna E.; Schuster, Stephan C. 分享 收藏
Genome sequences of the human body louse and its primary endosymbiont provide insights into the permanent parasitic lifestyle Kirkness, Ewen F.; Haas, Brian J.; Sun, Weilin; Braig, Henk R.; Perotti, M. Alejandra; Clark, John M.; Lee, Si Hyeock; Robertson, Hugh M.; Kennedy, Ryan C.; Elhaik, Eran; Gerlach, Daniel; Kriventseva, Evgenia V.; Elsik, Christine G.; Graur, Dan; Hill, Catherine A.; Veenstra, Jan A.; Walenz, Brian; Tubio, Jose Manuel C.; Ribeiro, Jose M. C.; Rozas, Julio; Johnston, J. Spencer; Reese, Justin T.; Popadic, Aleksandar; Tojo, Marta; Raoult, Didier; Reed, David L.; Tomoyasu, Yoshinori; Krause, Emily; Mittapalli, Omprakash; Margam, Venu M.; Li, Hong-Mei; Meyer, Jason M.; Johnson, Reed M.; Romero-Severson, Jeanne; VanZee, Janice Pagel; Alvarez-Ponce, David; Vieira, Filipe G.; Aguade, Montserrat; Guirao-Rico, Sara; Anzola, Juan M.; Yoon, Kyong S.; Strycharz, Joseph P.; Unger, Maria F.; Christley, Scott; Lobo, Neil F.; Seufferheld, Manfredo J.; Wang, NaiKuan; Dasch, Gregory A.; Struchiner, Claudio J.; Madey, Greg; Hannick, Linda I.; Bidwell, Shelby; Joardar, Vinita; Caler, Elisabet; Shao, Renfu; Barker, Stephen C.; Cameron, Stephen; Bruggner, Robert V.; Regier, Allison; Johnson, Justin; Viswanathan, Lakshmi; Utterback, Terry R.; Sutton, Granger G.; Lawson, Daniel; Waterhouse, Robert M.; Venter, J. Craig; Strausberg, Robert L.; Berenbaum, May R.; Collins, Frank H.; Zdobnov, Evgeny M.; Pittendrigh, Barry R. 分享 收藏
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