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Philip T. L. C. Clausen

research group for genomic epidemiology, national food institute, technical university of denmark , 2800 kgs. lyngby ,

15H指数
49论文数
3.9K被引数
收录论文 18
发表时间
Assembly-free typing of Nanopore and Illumina data through proximity scoring with KMA通过邻近评分与KMA对Nanopore和Illumina数据进行免组装分型
err2025-09-01
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errOAAI
errPhilip T L C Clausen; Malte B Hallgren; Søren Overballe-Petersen; Vanessa R Marcelino; Henrik Hasman; Frank M Aarestrup
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The European livestock resistome欧洲家畜抗性组
err2024-04-16
err0
errOAAI
errMunk, Patrick; Yang, Dongsheng; Roder, Timo; Maier, Leonie; Petersen, Thomas Nordahl; Duarte, Ana Sofia Ribeiro; Clausen, Philip T. L. C.; Brinch, Christian; Van Gompel, Liese; Luiken, Roosmarijn; Wagenaar, Jaap A.; Schmitt, Heike; Heederik, Dick J. J.; Mevius, Dik J.; Smit, Lidwien A. M.; Bossers, Alex; Aarestrup, Frank M.
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Nanopore sequencing technology for clinical diagnosis of infectious diseases where laboratory capacity is meager: A case report纳米孔测序技术用于实验室能力不足的传染病临床诊断1例
errHELIYON
IF3.6
err2023-07-01
err2
errOAAI
errKumburu, Happiness H.; Shayo, Mariana; van Zwetslaar, Marco; Njau, Judith; Kuchaka, Davis J.; Ignas, Ignas P.; Wadugu, Boaz; Kasworm, Robert; Masaki, Lazaro J.; Hallgren, Malte B.; Clausen, Philip T. L. C.; Mmbaga, Blandina Theophil; Aarestrup, Frank M.; Sonda, Tolbert B.
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SourceFinder: a Machine-Learning-Based Tool for Identification of Chromosomal, Plasmid, and Bacteriophage Sequences from Assemblies
err2022-12-21
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errOAAI
errAytan-Aktug, Derya; Grigorjev, Vladislav; Szarvas, Judit; Clausen, Philip T. L. C.; Munk, Patrick; Nguyen, Marcus; Davis, James J.; Aarestrup, Frank M.; Lund, Ole
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PlasmidHostFinder: Prediction of Plasmid Hosts Using Random ForestPlasmidHostFinder: 使用随机森林预测质粒宿主
err2022-04-26
err11
errOAAI
errAytan-Aktug, Derya; Clausen, Philip T. L. C.; Szarvas, Judit; Munk, Patrick; Otani, Saria; Nguyen, Marcus; Davis, James J.; Lund, Ole; Aarestrup, Frank M.
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Critical Assessment of Metagenome Interpretation: the second round of challenges
err2022-04-08
err136
errOAAI
errMeyer, Fernando; Fritz, Adrian; Deng, Zhi-Luo; Koslicki, David; Lesker, Till Robin; Gurevich, Alexey; Robertson, Gary; Alser, Mohammed; Antipov, Dmitry; Beghini, Francesco; Bertrand, Denis; Brito, Jaqueline J.; Brown, C. Titus; Buchmann, Jan; Buluc, Aydin; Chen, Bo; Chikhi, Rayan; Clausen, Philip T. L. C.; Cristian, Alexandru; Dabrowski, Piotr Wojciech; Darling, Aaron E.; Egan, Rob; Eskin, Eleazar; Georganas, Evangelos; Goltsman, Eugene; Gray, Melissa A.; Hansen, Lars Hestbjerg; Hofmeyr, Steven; Huang, Pingqin; Irber, Luiz; Jia, Huijue; Jorgensen, Tue Sparholt; Kieser, Silas D.; Klemetsen, Terje; Kola, Axel; Kolmogorov, Mikhail; Korobeynikov, Anton; Kwan, Jason; LaPierre, Nathan; Lemaitre, Claire; Li, Chenhao; Limasset, Antoine; Malcher-Miranda, Fabio; Mangul, Serghei; Marcelino, Vanessa R.; Marchet, Camille; Marijon, Pierre; Meleshko, Dmitry; Mende, Daniel R.; Milanese, Alessio; Nagarajan, Niranjan; Nissen, Jakob; Nurk, Sergey; Oliker, Leonid; Paoli, Lucas; Peterlongo, Pierre; Piro, Vitor C.; Porter, Jacob S.; Rasmussen, Simon; Rees, Evan R.; Reinert, Knut; Renard, Bernhard; Robertsen, Espen Mikal; Rosen, Gail L.; Ruscheweyh, Hans-Joachim; Sarwal, Varuni; Segata, Nicola; Seiler, Enrico; Shi, Lizhen; Sun, Fengzhu; Sunagawa, Shinichi; Sorensen, Soren Johannes; Thomas, Ashleigh; Tong, Chengxuan; Trajkovski, Mirko; Tremblay, Julien; Uritskiy, Gherman; Vicedomini, Riccardo; Wang, Zhengyang; Wang, Ziye; Wang, Zhong; Warren, Andrew; Willassen, Nils Peder; Yelick, Katherine; You, Ronghui; Zeller, Georg; Zhao, Zhengqiao; Zhu, Shanfeng; Zhu, Jie; Garrido-Oter, Ruben; Gastmeier, Petra; Hacquard, Stephane; Haeussler, Susanne; Khaledi, Ariane; Maechler, Friederike; Mesny, Fantin; Radutoiu, Simona; Schulze-Lefert, Paul; Smit, Nathiana; Strowig, Till; Bremges, Andreas; Sczyrba, Alexander; McHardy, Alice Carolyn
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ResFinder-an open online resource for identification of antimicrobial resistance genes in next- generation sequencing data and prediction of phenotypes from genotypes
err2022-01-17
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errOAAI
errFlorensa, Alfred Ferrer; Kaas, Rolf Sommer; Clausen, Philip Thomas Lanken Conradsen; Aytan-Aktug, Derya; Aarestrup, Frank M.
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Predicting Antimicrobial Resistance Using Partial Genome Alignments
err2021-06-29
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errOAAI
errAytan-Aktug, D.; Nguyen, M.; Clausen, P. T. L. C.; Stevens, R. L.; Aarestrup, F. M.; Lund, O.; Davis, J. J.
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SinEx DB 2.0 update 2020: database for eukaryotic single-exon coding sequences
err2021-01-28
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errOAAI
errJorquera, R.; Gonzalez, C.; Clausen, P. T. L. C.; Petersen, B.; Holmes, D. S.
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CCMetagen: comprehensive and accurate identification of eukaryotes and prokaryotes in metagenomic dataCCMetagen: 在宏基因组数据中全面准确地鉴定真核生物和原核生物
err2020-04-28
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errMarcelino, Vanessa R.; Clausen, Philip T. L. C.; Buchmann, Jan P.; Wille, Michelle; Iredell, Jonathan R.; Meyer, Wieland; Lund, Ole; Sorrell, Tania C.; Holmes, Edward C.
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Prediction of Acquired Antimicrobial Resistance for Multiple Bacterial Species Using Neural Networks
err2020-02-11
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errAytan-Aktug, D.; Clausen, P. T. L. C.; Bortolaia, V; Aarestrup, F. M.; Lund, O.
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LRE-Finder, a Web tool for detection of the 23S rRNA mutations and the optrA, cfr, cfr(B) and poxtA genes encoding linezolid resistance in enterococci from whole-genome sequences
err2019-03-12
err60
PREAI
errHasman, Henrik; Clausen, Philip T. L. C.; Kaya, Hulya; Hansen, Frank; Knudsen, Jenny Dahl; Wang, Mikala; Holzknecht, Barbara Juliane; Samulioniene, Jurgita; Roder, Bent L.; Frimodt-Moller, Niels; Lund, Ole; Hammerum, Anette M.
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Global monitoring of antimicrobial resistance based on metagenomics analyses of urban sewage基于城市污水宏基因组分析的全球抗菌素耐药性监测
err2019-03-08
err614
errOAAI
errHendriksen, Rene S.; Munk, Patrick; Njage, Patrick; van Bunnik, Bram; McNally, Luke; Lukjancenko, Oksana; Roder, Timo; Nieuwenhuijse, David; Pedersen, Susanne Karlsmose; Kjeldgaard, Jette; Kaas, Rolf S.; Clausen, Philip Thomas Lanken Conradsen; Vogt, Josef Korbinian; Leekitcharoenphon, Pimlapas; van de Schans, Milou G. M.; Zuidema, Tina; Husman, Ana Maria de Roda; Rasmussen, Simon; Petersen, Bent; Amid, Clara; Cochrane, Guy; Sicheritz-Ponten, Thomas; Schmitt, Heike; Alvarez, Jorge Raul Matheu; Aidara-Kane, Awa; Pamp, Sunje J.; Lund, Ole; Hald, Tine; Woolhouse, Mark; Koopmans, Marion P.; Vigre, Hakan; Petersen, Thomas Nordahl; Aarestrup, Frank M.; Bego, Artan; Rees, Catherine; Cassar, Susan; Coventry, Kris; Collignon, Peter; Allerberger, Franz; Rahube, Teddie O.; Oliveira, Guilherme; Ivanov, Ivan; Vuthy, Yith; Sopheak, Thet; Yost, Christopher K.; Ke, Changwen; Zheng, Huanying; Li Baisheng; Jiao, Xiaoyang; Donado-Godoy, Pilar; Coulibaly, Kalpy Julien; Jergovic, Matijana; Hrenovic, Jasna; Karpiskova, Renata; Eduardo Villacis, Jose; Legesse, Mengistu; Eguale, Tadesse; Heikinheimo, Annamari; Malania, Lile; Nitsche, Andreas; Brinkmann, Annika; Saba, Courage Kosi Setsoafia; Kocsis, Bela; Solymosi, Norbert; Thorsteinsdottir, Thorunn R.; Hatha, Abdulla Mohamed; Alebouyeh, Masoud; Morris, Dearbhaile; Cormican, Martin; O'Connor, Louise; Moran-Gilad, Jacob; Alba, Patricia; Battisti, Antonio; Shakenova, Zeinegul; Kiiyukia, Ciira; Ng'eno, Eric; Raka, Lul; Avsejenko, Jelena; Berzins, Aivars; Bartkevics, Vadims; Penny, Christian; Rajandas, Heraa; Parimannan, Sivachandran; Haber, Malcolm Vella; Pal, Pushkar; Jeunen, Gert-Jan; Gemmell, Neil; Fashae, Kayode; Holmstad, Rune; Hasan, Rumina; Shakoor, Sadia; Rojas, Maria Luz Zamudio; Wasyl, Dariusz; Bosevska, Golubinka; Kochubovski, Mihail; Radu, Cojocaru; Gassama, Amy; Radosavljevic, Vladimir; Wuertz, Stefan; Zuniga-Montanez, Rogelio; Tay, Moon Y. F.; Gavacova, Dagmar; Pastuchova, Katarina; Truska, Peter; Trkov, Marija; Esterhuyse, Kerneels; Keddy, Karen; Cerda-Cuellar, Marta; Pathirage, Sujatha; Norrgren, Leif; Orn, Stefan; Larsson, D. G. Joakim; Van der Heijden, Tanja; Kumburu, Happiness Houka; Sanneh, Bakary; Bidjada, Pawou; Njanpop-Lafourcade, Berthe-Marie; Nikiema-Pessinaba, Somtinda Christelle; Levent, Belkis; Meschke, John Scott; Beck, Nicola Koren; Chinh Dang Van; Nguyen Do Phuc; Doan Minh Nguyen Tran; Kwenda, Geoffrey; Tabo, Djim-Adjim; Wester, Astrid Louise; Cuadros-Orellana, Sara
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Improved ontology for eukaryotic single-exon coding sequences in biological databases
err2018-09-18
err7
errOAAI
errJorquera, Roddy; Gonzalez, Carolina; Clausen, Philip; Petersen, Bent; Holmes, David S.
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