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Expanding the range of the respiratory infectome in Australian feedlot cattle with and without respiratory disease using metatranscriptomics Brito, Barbara P.; Frost, Melinda J.; Anantanawat, Kay; Jaya, Frederick; Batterham, Tony; Djordjevic, Steven P.; Chang, Wei-Shan; Holmes, Edward C.; Darling, Aaron E.; Kirkland, Peter D. 分享 收藏
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Critical Assessment of Metagenome Interpretation: the second round of challenges Meyer, Fernando; Fritz, Adrian; Deng, Zhi-Luo; Koslicki, David; Lesker, Till Robin; Gurevich, Alexey; Robertson, Gary; Alser, Mohammed; Antipov, Dmitry; Beghini, Francesco; Bertrand, Denis; Brito, Jaqueline J.; Brown, C. Titus; Buchmann, Jan; Buluc, Aydin; Chen, Bo; Chikhi, Rayan; Clausen, Philip T. L. C.; Cristian, Alexandru; Dabrowski, Piotr Wojciech; Darling, Aaron E.; Egan, Rob; Eskin, Eleazar; Georganas, Evangelos; Goltsman, Eugene; Gray, Melissa A.; Hansen, Lars Hestbjerg; Hofmeyr, Steven; Huang, Pingqin; Irber, Luiz; Jia, Huijue; Jorgensen, Tue Sparholt; Kieser, Silas D.; Klemetsen, Terje; Kola, Axel; Kolmogorov, Mikhail; Korobeynikov, Anton; Kwan, Jason; LaPierre, Nathan; Lemaitre, Claire; Li, Chenhao; Limasset, Antoine; Malcher-Miranda, Fabio; Mangul, Serghei; Marcelino, Vanessa R.; Marchet, Camille; Marijon, Pierre; Meleshko, Dmitry; Mende, Daniel R.; Milanese, Alessio; Nagarajan, Niranjan; Nissen, Jakob; Nurk, Sergey; Oliker, Leonid; Paoli, Lucas; Peterlongo, Pierre; Piro, Vitor C.; Porter, Jacob S.; Rasmussen, Simon; Rees, Evan R.; Reinert, Knut; Renard, Bernhard; Robertsen, Espen Mikal; Rosen, Gail L.; Ruscheweyh, Hans-Joachim; Sarwal, Varuni; Segata, Nicola; Seiler, Enrico; Shi, Lizhen; Sun, Fengzhu; Sunagawa, Shinichi; Sorensen, Soren Johannes; Thomas, Ashleigh; Tong, Chengxuan; Trajkovski, Mirko; Tremblay, Julien; Uritskiy, Gherman; Vicedomini, Riccardo; Wang, Zhengyang; Wang, Ziye; Wang, Zhong; Warren, Andrew; Willassen, Nils Peder; Yelick, Katherine; You, Ronghui; Zeller, Georg; Zhao, Zhengqiao; Zhu, Shanfeng; Zhu, Jie; Garrido-Oter, Ruben; Gastmeier, Petra; Hacquard, Stephane; Haeussler, Susanne; Khaledi, Ariane; Maechler, Friederike; Mesny, Fantin; Radutoiu, Simona; Schulze-Lefert, Paul; Smit, Nathiana; Strowig, Till; Bremges, Andreas; Sczyrba, Alexander; McHardy, Alice Carolyn 分享 收藏
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STRONG: metagenomics strain resolution on assembly graphs STRONG: 组装图上的宏基因组学菌株分辨率 Quince, Christopher; Nurk, Sergey; Raguideau, Sebastien; James, Robert; Soyer, Orkun S.; Summers, J. Kimberly; Limasset, Antoine; Eren, A. Murat; Chikhi, Rayan; Darling, Aaron E. 分享 收藏
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A large-scale metagenomic survey dataset of the post-weaning piglet gut lumen 断奶后仔猪肠腔的大规模宏基因组调查数据集 Gaio, Daniela; DeMaere, Matthew Z.; Anantanawat, Kay; Eamens, Graeme J.; Liu, Michael; Zingali, Tiziana; Falconer, Linda; Chapman, Toni A.; Djordjevic, Steven P.; Darling, Aaron E. 分享 收藏
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Human milk oligosaccharide profiles and allergic disease up to 18 years 长达18年的人乳寡糖概况和过敏性疾病 Lodge, Caroline J.; Lowe, Adrian J.; Milanzi, Elasma; Bowatte, Gayan; Abramson, Michael J.; Tsimiklis, Helen; Axelrad, Christine; Robertson, Bianca; Darling, Aaron E.; Svanes, Cecilie; Wjst, Matthias; Dharmage, Shyamali C.; Bode, Lars 分享 收藏
Escherichia coliST8196 is a novel, locally evolved, and extensively drug resistant pathogenic lineage within the ST131 clonal complex 大肠埃希氏菌coliST8196是ST131克隆复合体中一种新的，局部进化的，广泛耐药的致病谱系 Hastak, Priyanka; Fourment, Mathieu; Darling, Aaron E.; Gottlieb, Thomas; Cheong, Elaine; Merlino, John; Myers, Garry S. A.; Chowdhury, Piklu Roy; Djordjevic, Steven P. 分享 收藏
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TraDIS-Xpress: a high-resolution whole-genome assay identifies novel mechanisms of triclosan action and resistance TraDIS-Xpress: 高分辨率全基因组分析鉴定三氯生作用和抗性的新机制 Yasir, Muhammad; Turner, A. Keith; Bastkowski, Sarah; Baker, David; Page, Andrew J.; Telatin, Andrea; Minh-Duy Phan; Monahan, Leigh; Savva, George M.; Darling, Aaron; Webber, Mark A.; Charles, Ian G. 分享 收藏
Whole-genome analysis of extraintestinal Escherichia coli sequence type 73 from a single hospital over a 2 year period identified different circulating clonal groups Bogema, D. R.; McKinnon, J.; Liu, M.; Hitchick, N.; Miller, N.; Venturini, C.; Iredell, J.; Darling, A. E.; Chowdury, P. Roy; Djordjevic, S. P. 分享 收藏
BEAGLE 3: Improved Performance, Scaling, and Usability for a High-Performance Computing Library for Statistical Phylogenetics BEAGLE 3: 用于统计系统发育学的高性能计算库的改进的性能，扩展和可用性 Ayres, Daniel; Cummings, Michael; Baele, Guy; Darling, Aaron; Lewis, Paul; Swofford, David; Huelsenbeck, John; Lemey, Philippe; Rambaut, Andrew; Suchard, Marc 分享 收藏
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CAMISIM: simulating metagenomes and microbial communities CAMISIM: 模拟宏基因组和微生物群落 Fritz, Adrian; Hofmann, Peter; Majda, Stephan; Dahms, Eik; Droege, Johannes; Fiedler, Jessika; Lesker, Till R.; Belmann, Peter; DeMaere, Matthew Z.; Darling, Aaron E.; Sczyrba, Alexander; Bremges, Andreas; McHardy, Alice C. 分享 收藏
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