Valentine Svensson - Publications, H-index & Citations

Valentine Svensson

University of California System

28H指数

70论文数

8.5K被引数

收录论文 24

发表时间

Tahoe-100M: Mapping drug-induced molecular phenotypes at single-cell resolution Tahoe-100M：在单细胞分辨率下映射药物诱导的分子表型

Cell

IF42.5

2026-09-01

PREAI

Zhang, Jesse; Ubas, Airol A.; Svensson, Valentine; Thomas, Nicole; Subramanyam, Vishvak; Carpenter, Christopher; Winters, Aidan; de Borja, Richard; Teyssier, Noam; Thakar, Neha; Khan, Umair; Akella, Pooja V.; Green, Harper J.; Thompson, John D.; Tran, Vuong; Pangallo, Joseph; Papalexi, Efthymia; Sapre, Ajay; Nguyen, Hoai; Sanderson, Oliver; Nigos, Maria; Kaplan, Olivia; Schroeder, Sarah; Hariadi, Bryan; Marrujo, Simone; Curca, Crina; Salvino, Alec; Olivares, Guillermo Gallareta; Koehler, Ryan; Rosenberg, Alexander; Roco, Charles; Ricci-Tam, Chiara; Jones, Matthew G.; Dobin, Alexander; Plosky, Brian S.; Lyons, Danielle E.; Merico, Daniele; Alidoust, Nima; Goodarzi, Hani; Yu, Johnny

A Python library for probabilistic analysis of single-cell omics data 用于单细胞组学数据概率分析的Python库

NATURE BIOTECHNOLOGY

IF41.7

2022-02-07

208

OAAI

Gayoso, Adam; Lopez, Romain; Xing, Galen; Boyeau, Pierre; Amiri, Valeh Valiollah Pour; Hong, Justin; Wu, Katherine; Jayasuriya, Michael; Mehlman, Edouard; Langevin, Maxime; Liu, Yining; Samaran, Jules; Misrachi, Gabriel; Nazaret, Achille; Clivio, Oscar; Xu, Chenling; Ashuach, Tal; Gabitto, Mariano; Lotfollahi, Mohammad; Svensson, Valentine; Beltrame, Eduardo da Veiga; Kleshchevnikov, Vitalii; Talavera-Lopez, Carlos; Pachter, Lior; Theis, Fabian J.; Streets, Aaron; Jordan, Michael I.; Regier, Jeffrey; Yosef, Nir

Reply to: UMI or not UMI, that is the question for scRNA-seq zero-inflation

NATURE BIOTECHNOLOGY

IF41.7

2021-02-01

PREAI

Svensson, Valentine

A curated database reveals trends in single-cell transcriptomics 一个精选的数据库揭示了单细胞转录组学的趋势

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION

IF3.6

2020-11-28

131

OAAI

Svensson, Valentine; Beltrame, Eduardo da Veiga; Pachter, Lior

Transcriptome dynamics of CD4+ T cells during malaria maps gradual transit from effector to memory

NATURE IMMUNOLOGY

IF27.6

2020-10-12

OAAI

Soon, Megan S. F.; Lee, Hyun Jae; Engel, Jessica A.; Straube, Jasmin; Thomas, Bryce S.; Pernold, Clara P. S.; Clarke, Lachlan S.; Laohamonthonkul, Pawat; Haldar, Rohit N.; Williams, Cameron G.; Lansink, Lianne I. M.; Moreira, Marcela L.; Bramhall, Michael; Koufariotis, Lambros T.; Wood, Scott; Chen, Xi; James, Kylie R.; Lonnberg, Tapio; Lane, Steven W.; Belz, Gabrielle T.; Engwerda, Christian R.; Khoury, David S.; Davenport, Miles P.; Svensson, Valentine; Teichmann, Sarah A.; Haque, Ashraful

Single-cell transcriptomics of alloreactive CD4+ T cells over time reveals divergent fates during gut graft-versus-host disease

JCI INSIGHT

IF6.1

2020-07-09

OAAI

Engel, Jessica A.; Lee, Hyun Jae; Williams, Cameron G.; Kuns, Rachel; Olver, Stuart; Lansink, Lianne I. M.; Soon, Megan S. F.; Andersen, Stacey B.; Powell, Joseph E.; Svensson, Valentine; Teichmann, Sarah A.; Hill, Geoffrey R.; Varelias, Antiopi; Koyama, Motoko; Haque, Ashraful

Protein velocity and acceleration from single-cell multiomics experiments 单细胞多组学实验的蛋白质速度和加速度

GENOME BIOLOGY

IF9.4

2020-02-18

OAAI

Gorin, Gennady; Svensson, Valentine; Pachter, Lior

Single-cell transcriptomics identifies CD44 as a marker and regulator of endothelial to haematopoietic transition

NATURE COMMUNICATIONS

IF15.7

2020-01-29

OAAI

Oatley, Morgan; Bolukbasi, Ozge Vargel; Svensson, Valentine; Shvartsman, Maya; Ganter, Kerstin; Zirngibl, Katharina; Pavlovich, Polina, V; Milchevskaya, Vladislava; Foteva, Vladimira; Natarajan, Kedar N.; Baying, Bianka; Benes, Vladimir; Patil, Kiran R.; Teichmann, Sarah A.; Lancrin, Christophe

Droplet scRNA-seq is not zero-inflated 液滴scrna-seq不是零膨胀

NATURE BIOTECHNOLOGY

IF41.7

2020-01-14

202

OAAI

Svensson, Valentine

A method for transcriptome-wide gene expression quantification in intact tissues

IMMUNOLOGY AND CELL BIOLOGY

IF3

2019-05-26

OAAI

Svensson, Valentine

RNA Velocity: Molecular Kinetics from Single-Cell RNA-Seq

MOLECULAR CELL

IF16.6

2018-10-01

OAAI

Svensson, Valentine; Pachter, Lior

SpatialDE: identification of spatially variable genes SpatialDE: 空间可变基因的鉴定

NATURE METHODS

IF32.1

2018-03-19

329

OAAI

Svensson, Valentine; Teichmann, Sarah A.; Stegle, Oliver

Exponential scaling of single-cell RNA-seq in the past decade 过去十年单细胞rna-seq的指数缩放

NATURE PROTOCOLS

IF16

2018-03-01

646

PREAI

Svensson, Valentine; Vento-Tormo, Roser; Teichmann, Sarah A.

Single-cell RNA-sequencing resolves self-antigen expression during mTEC development

SCIENTIFIC REPORTS

IF3.9

2018-01-12

OAAI

Miragaia, Ricardo J.; Zhang, Xiuwei; Gomes, Tomas; Svensson, Valentine; Ilicic, Tomislav; Henriksson, Johan; Kar, Gozde; Lonnberg, Tapio

Computational approaches for interpreting scRNA-seq data

FEBS LETTERS

IF3

2017-06-12

OAAI

Rostom, Raghd; Svensson, Valentine; Teichmann, Sarah A.; Kar, Gozde

Single-cell RNA-seq and computational analysis using temporal mixture modeling resolves TH1/TFH fate bifurcation in malaria

SCIENCE IMMUNOLOGY

IF16.3

2017-03-31

151

OAAI

Lonnberg, Tapio; Svensson, Valentine; James, Kylie R.; Fernandez-Ruiz, Daniel; Sebina, Ismail; Montandon, Ruddy; Soon, Megan S. F.; Fogg, Lily G.; Nair, Arya Sheela; Liligeto, Urijah N.; Stubbington, Michael J. T.; Ly, Lam-Ha; Bagger, Frederik Otzen; Zwiessele, Max; Lawrence, Neil D.; Souza-Fonseca-Guimaraes, Fernando; Bunn, Patrick T.; Engwerda, Christian R.; Heath, William R.; Billker, Oliver; Stegle, Oliver; Haque, Ashraful; Teichmann, Sarah A.

Power analysis of single-cell RNA-sequencing experiments

NATURE METHODS

IF32.1

2017-03-06

426

OAAI

Svensson, Valentine; Natarajan, Kedar Nath; Ly, Lam-Ha; Miragaia, Ricardo J.; Labalette, Charlotte; Macaulay, Iain C.; Cvejic, Ana; Teichmann, Sarah A.

Single-cell analysis at the threshold

NATURE BIOTECHNOLOGY

IF41.7

2016-11-08

PREAI

Chen, Xi; Love, J. Christopher; Navin, Nicholas E.; Pachter, Lior; Stubbington, Michael J. T.; Svensson, Valentine; Sweedler, Jonathan V.; Teichmann, Sarah A.

MERVL/Zscan4 Network Activation Results in Transient Genome-wide DNA Demethylation of mESCs

CELL REPORTS

IF6.9

2016-09-01

164

OAAI

Eckersley-Maslin, Melanie A.; Svensson, Valentine; Krueger, Christel; Stubbs, Thomas M.; Giehr, Pascal; Krueger, Felix; Miragaia, Ricardo J.; Kyriakopoulos, Charalampos; Berrens, Rebecca V.; Milagre, Ines; Walter, Joem; Teichmann, Sarah A.; Reik, Wolf

Single cell analysis of CD4+ T cell differentiation reveals three major cell states and progressive acceleration of proliferation (vol 17, 103, 2016)

GENOME BIOLOGY

IF9.4

2016-06-22

OAAI

Proserpio, Valentina; Piccolo, Andrea; Haim-Vilmovsky, Liora; Kar, Gozde; Lonnberg, Tapio; Svensson, Valentine; Pramanik, Jhuma; Natarajan, Kedar Nath; Zhai, Weichao; Zhang, Xiuwei; Donati, Giacomo; Kayikci, Melis; Kotar, Jurij; McKenzie, Andrew N. J.; Montandon, Ruddy; James, Kylie R.; Fernandez-Ruiz, Daniel; Heath, William R.; Haque, Ashraful; Billker, Oliver; Woodhouse, Steven; Cicuta, Pietro; Nicodemi, Mario; Teichmann, Sarah A.

研究方向