Lim Heo - Publications, H-index & Citations

Lim Heo

bristol-myers squibb

28H指数

57论文数

1.5W被引数

收录论文 31

发表时间

A blinded, prospective benchmark of in silico antibody discovery anchored to experimental affinity and developability 一项基于实验亲和力与可开发性的模拟抗体发现的盲法前瞻性基准研究

Nature Biotechnology

IF41.7

2026-08-19

OAAI

M. Frank Erasmus; Daniel Bedinger; Elizabeth Hopkins; Ginger Ferguson; Justine Strickler; Christilyn P. Graff; Samantha R. Summers; Stacy L. Capehart; Joshua D. Slocum; Crystal Richardson; Sumit Kumar; Zhifei Sun; Yujie Shang; Jixian Zhang; Ming Gu; Lixia Yi; Alon Wellner; Shuangjia Zheng; Wei Lu; Pietro Sormanni; Matthew Greenig; Haiping Zhang; Brendan T. Mann; Mahdi Baghbanzadeh; Ali Rahnavard; Gregory L. Moore; Huaiyu Sun; Ying Ding; Alex Nisthal; Jitendra Kanodia; Matthew J. Bernett; Aurélien Pélissier; Yanjun Shao; Maria Rodriguez Martinez; Karthik Ramesh; Horacio Nastri; Andreas Evers; Anhar Abdelatif; Andrew J. Bordner; Mykola Bordyuh; Lim Heo; Brian A. Kidd; H. Serhat Tetikol; Shuai Wei; Jung-Eun Shin; Ryan Peckner; Leigh Manley; Ajitesh Lunge; Yashas Devasurmutt; Bora Guloglu; Liviu Copoiu; Miles McGibbon; Monica L. Fernandez-Quintero; Nitesh Mishra; Sean M. Callaghan; Olivia M. Swanson; Daniel L. V. Bader; James A. Ferguson; Sai S. R. Raghavan; Benjamin Nemoz; Colleen A. Maillie; Charles Bowman; Bryan Briney; Andrew B. Ward; Paolo Marcatili; Rahmad Akbar; Bing He; Fandi Wu; Jianhua Yao; Bin Hu; Michal Kucer; Kaetlyn Rose Gibson; Rahul Somasundaram; Li-Wei Hung; Tomasz Kaszuba; Daved H. Fremont; Hyeongsun Jeong; Vinodh Babu Kurella; Shipra Malhotra; Satyendra Kumar; Yanyun Liu; Lingling Xu; Joshua Misa; Alexander Nicholas St. John; Jeff Vogt; Fátima A. Dávila-Hernández; Da Xu; Michael Chungyoun; Zyaja D. Huggan; Jeffrey J. Gray; Jonathan Parkinson; Young Su Ko; Wei Wang; Franziska Geiger; Jonathon D. Ziegler; Nikhil Haas; Chance Challacombe; Ahmad Qamar; Akshita Singh; Yi-Ching Tang; Zhiqiang An; Xiaoqian Jiang; Yejin Kim; Xinyan Zhao; Erik Swanson; Jürgen Klattig; Karsten Winkler; Tschimegma Bataa; Volker Sandig; Lilian Denzler; Chunan Liu; Randall J. Brezski; Laura Spector; Katheryn Perea-Schmittle; Sara D’Angelo; Fortunato Ferrara; Andrew R. M. Bradbury

Direct generation of protein conformational ensembles via machine learning 通过机器学习直接生成蛋白质构象集合

NATURE COMMUNICATIONS

IF15.7

2023-02-11

OAAI

Janson, Giacomo; Valdes-Garcia, Gilberto; Heo, Lim; Feig, Michael

Modeling Concentration-dependent Phase Separation Processes Involving Peptides and RNA via Residue-Based Coarse-Graining

JOURNAL OF CHEMICAL THEORY AND COMPUTATION

IF5.5

2023-01-06

OAAI

Valdes-Garcia, Gilberto; Heo, Lim; Lapidus, Lisa J.; Feig, Michael

ColabFold: making protein folding accessible to all ColabFold: 使所有人都可以进行蛋白质折叠

NATURE METHODS

IF32.1

2022-05-30

2.1K

OAAI

Mirdita, Milot; Schutze, Konstantin; Moriwaki, Yoshitaka; Heo, Lim; Ovchinnikov, Sergey; Steinegger, Martin

Multi-state modeling of G-protein coupled receptors at experimental accuracy 以实验精度对g蛋白偶联受体进行多状态建模

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

IF2.8

2022-05-16

102

OAAI

Heo, Lim; Feig, Michael

Inhibitory proteins block substrate access by occupying the active site cleft of Bacillus subtilis intramembrane protease SpoIVFB

ELIFE

IF0

2022-04-26

OAAI

Olenic, Sandra; Heo, Lim; Feig, Michael; Kroos, Lee

Protein assembly and crowding simulations

CURRENT OPINION IN STRUCTURAL BIOLOGY

IF7

2022-04-01

OAAI

Heo, Lim; Sugita, Yuji; Feig, Michael

Biosynthesis and trafficking of heme o and heme a: new structural insights and their implications for reaction mechanisms and prenylated heme transfer

CRITICAL REVIEWS IN BIOCHEMISTRY AND MOLECULAR BIOLOGY

IF6.4

2021-08-25

OAAI

Rivett, Elise D.; Heo, Lim; Feig, Michael; Hegg, Eric L.

Physics-based protein structure refinement in the era of artificial intelligence

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

IF2.8

2021-06-29

OAAI

Heo, Lim; Janson, Giacomo; Feig, Michael

GalaxyWater-wKGB: Prediction of Water Positions on Protein Structure Using wKGB Statistical Potential

JOURNAL OF CHEMICAL INFORMATION AND MODELING

IF5.3

2021-05-03

PREAI

Heo, Lim; Park, Sangwoo; Seok, Chaok

Improved Sampling Strategies for Protein Model Refinement Based on Molecular Dynamics Simulation

JOURNAL OF CHEMICAL THEORY AND COMPUTATION

IF5.5

2021-02-09

OAAI

Heo, Lim; Arbour, Collin F.; Janson, Giacomo; Feig, Michael

High-accuracy protein structures by combining machine-learning with physics-based refinement

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

IF2.8

2019-11-15

OAAI

Heo, Lim; Feig, Michael

Driven to near-experimental accuracy by refinement via molecular dynamics simulations 通过分子动力学模拟进行细化，以达到接近实验的精度

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

IF2.8

2019-06-24

OAAI

Heo, Lim; Arbour, Collin F.; Feig, Michael

GalaxyRefine2: simultaneous refinement of inaccurate local regions and overall protein structure

NUCLEIC ACIDS RESEARCH

IF13.1

2019-04-19

OAAI

Lee, Gyu Rie; Won, Jonghun; Heo, Lim; Seok, Chaok

Experimental accuracy in protein structure refinement via molecular dynamics simulations

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2018-12-10

OAAI

Heo, Lim; Feig, Michael

An analysis and evaluation of the WeFold collaborative for protein structure prediction and its pipelines in CASP11 and CASP12

SCIENTIFIC REPORTS

IF3.9

2018-07-02

OAAI

Keasar, Chen; McGuffin, Liam J.; Wallner, Bjorn; Chopra, Gaurav; Adhikari, Badri; Bhattacharya, Debswapna; Blake, Lauren; Bortot, Leandro Oliveira; Cao, Renzhi; Dhanasekaran, B. K.; Dimas, Itzhel; Faccioli, Rodrigo Antonio; Faraggi, Eshel; Ganzynkowicz, Robert; Ghosh, Sambit; Ghosh, Soma; Gieldon, Artur; Golon, Lukasz; He, Yi; Heo, Lim; Hou, Jie; Khan, Main; Khatib, Firas; Khoury, George A.; Kieslich, Chris; Kim, David E.; Krupa, Pawel; Lee, Gyu Rie; Li, Hongbo; Li, Jilong; Lipska, Agnieszka; Liwo, Adam; Maghrabi, Ali Hassan A.; Mirdita, Milot; Mirzaei, Shokoufeh; Mozolewska, Magdalena A.; Onel, Melis; Ovchinnikov, Sergey; Shah, Anand; Shah, Utkarsh; Sidi, Tomer; Sieradzan, Adam K.; Slusarz, Magdalena; Slusarz, Rafal; Smadbeck, James; Tamamis, Phanourios; Trieber, Nicholas; Wirecki, Tomasz; Yin, Yanping; Zhang, Yang; Bacardit, Jaume; Baranowski, Maciej; Chapman, Nicholas; Cooper, Seth; Defelicibus, Alexandre; Flatten, Jeff; Koepnick, Brian; Popovic, Zoran; Zaborowski, Bartlomiej; Baker, David; Cheng, Jianlin; Czaplewski, Cezary; Botazzo Delbem, Alexandre Claudio; Floudas, Christodoulos; Kloczkowski, Andrzej; Oldziej, Stanislaw; Levitt, Michael; Scheraga, Harold; Seok, Chaok; Soeding, Johannes; Vishveshwara, Saraswathi; Xu, Dong; Crivelli, Silvia N.

Structure refinement of membrane proteins via molecular dynamics simulations

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

IF2.8

2018-05-06

OAAI

Dutagaci, Bercem; Heo, Lim; Feig, Michael

The challenge of modeling protein assemblies: the CASP12-CAPRI experiment

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

IF2.8

2017-11-26

PREAI

Lensink, Marc F.; Velankar, Sameer; Baek, Minkyung; Heo, Lim; Seok, Chaok; Wodak, Shoshana J.