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David Hoksza

Charles University

20H指数
117论文数
2.8K被引数
收录论文 23
发表时间
Exornata: a web-based editor for the visualization and editing of RNA secondary structuresExornata:一个用于RNA二级结构可视化和编辑的网页编辑器
err2026-01-06
err0
errOAAI
errCaeden Meade; Biswajit Banerjee; Yuzheng Yang; Arsh Suri; David Hoksza; Loren Dean Williams; Anton S. Petrov
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Unified Visual-Aware Representations for Data Analytics用于数据分析的统一视觉感知表示
err2025-01-01
err0
errOAAI
errPeska, Ladislav; Sixtova, Ivana; Hoksza, David; Bernhauer, David; Lokoc, Jakub; Skopal, Tomas
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Genomics 2 Proteins portal: a resource and discovery tool for linking genetic screening outputs to protein sequences and structuresGenomics 2 Proteins portal: 用于将遗传筛选输出与蛋白质序列和结构联系起来的资源和发现工具
err2024-09-18
err0
errOAAI
errKwon, Seulki; Safer, Jordan; Nguyen, Duyen T.; Hoksza, David; May, Patrick; Arbesfeld, Jeremy A.; Rubin, Alan F.; Campbell, Arthur J.; Burgin, Alex; Iqbal, Sumaiya
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Delineation of functionally essential protein regions for 242 neurodevelopmental genes
errBRAIN
IF11.7
err2022-10-18
err4
errOAAI
errIqbal, Sumaiya; Bruenger, Tobias; Perez-Palma, Eduardo; Macnee, Marie; Brunklaus, Andreas; Daly, Mark J.; Campbell, Arthur J.; Hoksza, David; May, Patrick; Lal, Dennis
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PrankWeb 3: accelerated ligand-binding site predictions for experimental and modelled protein structures
err2022-05-24
err71
errOAAI
errJakubec, David; Skoda, Petr; Krivak, Radoslav; Novotny, Marian; Hoksza, David
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PDBe-KB: collaboratively defining the biological context of structural dataPdbe-kb: 协同定义结构数据的生物学背景
err2021-11-10
err49
errOAAI
errVaradi, Mihaly; Anyango, Stephen; Armstrong, David; Berrisford, John; Choudhary, Preeti; Deshpande, Mandar; Nadzirin, Nurul; Nair, Sreenath S.; Pravda, Lukas; Tanweer, Ahsan; Al-Lazikani, Bissan; Andreini, Claudia; Barton, Geoffrey J.; Bednar, David; Berka, Karel; Blundell, Tom; Brock, Kelly P.; Maria Carazo, Jose; Damborsky, Jiri; David, Alessia; Dey, Sucharita; Dunbrack, Roland; Fernandez Recio, Juan; Fraternali, Franca; Gibson, Toby; Helmer-Citterich, Manuela; Hoksza, David; Hopf, Thomas; Jakubec, David; Kannan, Natarajan; Krivak, Radoslav; Kumar, Manjeet; Levy, Emmanuel D.; London, Nir; Macias, Jose Ramon; Srivatsan, Madhusudhan M.; Marks, Debora S.; Martens, Lennart; McGowan, Stuart A.; McGreig, Jake E.; Modi, Vivek; Gonzalo Parra, R.; Pepe, Gerardo; Piovesan, Damiano; Prilusky, Jaime; Putignano, Valeria; Radusky, Leandro G.; Ramasamy, Pathmanaban; Rausch, Atilio O.; Reuter, Nathalie; Rodriguez, Luis A.; Rollins, Nathan J.; Rosato, Antonio; Serrano, Luis; Singh, Gulzar; Skoda, Petr; Sorzano, Carlos Oscar S.; Stourac, Jan; Sulkowska, Joanna, I; Svobodova, Radka; Tichshenko, Natalia; Tosatto, Silvio C. E.; Vranken, Wim; Wass, Mark N.; Xue, Dandan; Zaidman, Daniel; Thornton, Janet; Sternberg, Michael; Orengo, Christine; Velankar, Sameer
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R2DT is a framework for predicting and visualising RNA secondary structure using templates
err2021-06-09
err71
errOAAI
errSweeney, Blake A.; Hoksza, David; Nawrocki, Eric P.; Ribas, Carlos Eduardo; Madeira, Fabio; Cannone, Jamie J.; Gutell, Robin; Maddala, Aparna; Meade, Caeden D.; Williams, Loren Dean; Petrov, Anton S.; Chan, Patricia P.; Lowe, Todd M.; Finn, Robert D.; Petrov, Anton I.
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Machine Learning to Support the Presentation of Complex Pathway Graphs
err2021-05-01
err4
PREAI
errNielsen, Sune S.; Ostaszewski, Marek; McGee, Fintan; Hoksza, David; Zorzan, Simone
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RNAcentral 2021: secondary structure integration, improved sequence search and new member databases
err2020-10-27
err175
errOAAI
errSweeney, Blake A.; Petrov, Anton, I; Ribas, Carlos E.; Finn, Robert D.; Bateman, Alex; Szymanski, Maciej; Karlowski, Wojciech M.; Seemann, Stefan E.; Gorodkin, Jan; Cannone, Jamie J.; Gutell, Robin R.; Kay, Simon; Marygold, Steven; dos Santos, Gil; Frankish, Adam; Mudge, Jonathan M.; Barshir, Ruth; Fishilevich, Simon; Chan, Patricia P.; Lowe, Todd M.; Seal, Ruth; Bruford, Elspeth; Panni, Simona; Porras, Pablo; Karagkouni, Dimitra; Hatzigeorgiou, Artemis G.; Ma, Lina; Zhang, Zhang; Volders, Pieter-Jan; Mestdagh, Pieter; Griffiths-Jones, Sam; Fromm, Bastian; Peterson, Kevin J.; Kalvari, Ioanna; Nawrocki, Eric P.; Petrov, Anton S.; Weng, Shuai; Bouchard-Bourelle, Philia; Scott, Michelle; Lui, Lauren M.; Hoksza, David; Lovering, Ruth C.; Kramarz, Barbara; Mani, Prita; Ramachandran, Sridhar; Weinberg, Zasha
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Comprehensive characterization of amino acid positions in protein structures reveals molecular effect of missense variants
err2020-10-26
err65
errOAAI
errIqbal, Sumaiya; Perez-Palma, Eduardo; Jespersen, Jakob B.; May, Patrick; Hoksza, David; Heyne, Henrike O.; Ahmed, Shehab S.; Rifat, Zaara T.; Rahman, M. Sohel; Lage, Kasper; Palotie, Aarno; Cottrell, Jeffrey R.; Wagner, Florence F.; Daly, Mark J.; Campbell, Arthur J.; Lal, Dennis
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MISCAST: MIssense variant to protein StruCture Analysis web SuiTe
err2020-05-13
err7
errOAAI
errIqbal, Sumaiya; Hoksza, David; Perez-Palma, Eduardo; May, Patrick; Jespersen, Jakob B.; Ahmed, Shehab S.; Rifat, Zaara T.; Heyne, Henrike O.; Rahman, M. Sohel; Cottrell, Jeffrey R.; Wagner, Florence F.; Daly, Mark J.; Campbell, Arthur J.; Lal, Dennis
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Closing the gap between formats for storing layout information in systems biology (vol 21, pg 1249, 2020)
err2020-02-21
err1
errOAAI
errHoksza, David; Gawron, Piotr; Ostaszewski, Marek; Hasenauer, Jan; Schneider, Reinhard
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PDBe-KB: a community-driven resource for structural and functional annotations
err2019-10-04
err75
errOAAI
errVaradi, Mihaly; Bcrrisford, John; Deshpande, Mandar; Nair, Sreenath S.; Gutmanas, Aleksandras; Armstrong, David; Pravda, Lukas; Al-Lazikani, Bissan; Anyango, Stephen; Barton, Geoffrey J.; Berka, Karel; Blundell, Tom; Borkakoti, Neera; Dana, Jose; Das, Sayoni; Dey, Sucharita; Di Micco, Patrizio; Fraternali, Franca; Gibson, Toby; Helmer-Citterich, Manuela; Hoksza, David; Huang, Liang-Chin; Jain, Rishabh; Jubb, Harry; Kannas, Christos; Kannan, Natarajan; Koca, Jaroslav; Krivak, Radoslav; Kumar, Manjeet; Levy, Emmanuel D.; Madeira, F.; Madhusudhan, M. S.; Martell, Henry J.; MacGowan, Stuart; McGreig, Jake E.; Mir, Saqib; Mukhopadhyay, Abhik; Parca, Luca; Paysan-Lafosse, Typhaine; Radusky, Leandro; Ribeiro, Antonio; Serrano, Luis; Sillitoe, Ian; Singh, Gulzar; Skoda, Petr; Svobodova, Radka; Tyzack, Jonathan; Valencia, Alfonso; Fernandez, Eloy Villasclaras; Vranken, Wim; Wass, Mark; Thornton, Janet; Sternberg, Michael; Orengo, Christine; Velankar, Sameer
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Closing the gap between formats for storing layout information in systems biology
err2019-07-05
err18
errOAAI
errHoksza, David; Gawron, Piotr; Ostaszewski, Marek; Hasenauer, Jan; Schneider, Reinhard
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PrankWeb: a web server for ligand binding site prediction and visualization
err2019-05-22
err215
errOAAI
errJendele, Lukas; Krivak, Radoslav; Skoda, Petr; Novotny, Marian; Hoksza, David
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rPredictorDB: a predictive database of individual secondary structures of RNAs and their formatted plots
err2019-04-25
err4
errOAAI
errJelinek, Jan; Hoksza, David; Hajic, Jan; Pesek, Jan; Drozen, Jan; Hladik, Tomas; Klimpera, Michal; Vohradsky, Jiri; Panek, Josef
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