Remo Rohs - Publications, H-index & Citations

Remo Rohs

university of southern california

52H指数

154论文数

1.1W被引数

收录论文 72

发表时间

Sequence-based modeling of low-affinity transcription factor–DNA binding through deep learning 基于深度学习的低亲和力转录因子-DNA结合的序列建模

NAR Genomics and Bioinformatics

IF2.8

2026-03-05

OAAI

Yingfei Wang; Jinsen Li; Tsu-Pei Chiu; Beibei Xin; Remo Rohs; null

Quantitative modulation of a spatial enhancer through the biophysical properties of a transcription factor binding site 通过转录因子结合位点的生物物理特性对空间增强子进行定量调控

Science Advances

IF12.5

2026-01-07

PREAI

Conrad Fallon; Liucong Ling; Brendon H. Cooper; Stefano Ceolin; Tsu-Pei Chiu; Raktim Mitra; Bettina Mühling; Vani Srinivasan; Ayse Damla Durmaz; Daniel Veselinovic; Mahek Kothari; Athanasios Panagiotis Fylaktakis; William J. Glassford; Judith F. Kribelbauer-Swietek; Dimitrios K. Papadopoulos; Richard S. Mann; Remo Rohs; Nicolas Gompel

Novel fold and wing structure of Forkhead transcription factor facilitate DNA binding Forkhead转录因子新颖的折叠和翼状结构促进DNA结合

NUCLEIC ACIDS RESEARCH

IF13.1

2025-10-14

OAAI

Wang, George L.; Jiang, Yibei; Sun, Yuying; Nasertorabi, Fariborz; Weller, Jesse A.; Mitra, Raktim; Batyuk, Alexander; Aparicio, Oscar M.; Cherezov, Vadim; Rohs, Remo

PAM-adjacent DNA flexibility tunes CRISPR-Cas12a off-target binding

SCIENTIFIC REPORTS

IF3.9

2025-02-10

OAAI

Allen, Aleique; Cooper, Brendon H.; Singh, Jaideep; Rohs, Remo; Qin, Peter Z.

DNAproDB: an updated database for the automated and interactive analysis of protein-DNA complexes

NUCLEIC ACIDS RESEARCH

IF13.1

2024-11-04

OAAI

Mitra, Raktim; Cohen, Ari S.; Sagendorf, Jared M.; Berman, Helen M.; Rohs, Remo

Geometric deep learning of protein-DNA binding specificity

NATURE METHODS

IF32.1

2024-08-05

OAAI

Mitra, Raktim; Li, Jinsen; Sagendorf, Jared M.; Jiang, Yibei; Cohen, Ari S.; Chiu, Tsu-Pei; Glasscock, Cameron J.; Rohs, Remo

Structure-Based Drug Design with a Deep Hierarchical Generative Model 具有深层层次生成模型的基于结构的药物设计

JOURNAL OF CHEMICAL INFORMATION AND MODELING

IF5.3

2024-07-26

OAAI

Weller, Jesse A.; Rohs, Remo

DNA sequence and chromatin differentiate sequence-specific transcription factor binding in the human malaria parasite Plasmodium falciparum

NUCLEIC ACIDS RESEARCH

IF13.1

2024-07-05

OAAI

Bonnell, Victoria A.; Zhang, Yuning; Brown, Alan S.; Horton, John; Josling, Gabrielle A.; Chiu, Tsu-Pei; Rohs, Remo; Mahony, Shaun; Gordan, Raluca; Llinas, Manuel

Deep DNAshape webserver: prediction and real-time visualization of DNA shape considering extended k-mers

NUCLEIC ACIDS RESEARCH

IF13.1

2024-05-27

OAAI

Li, Jinsen; Rohs, Remo

RNAscape: geometric mapping and customizable visualization of RNA structure

NUCLEIC ACIDS RESEARCH

IF13.1

2024-04-17

OAAI

Mitra, Raktim; Cohen, Ari S.; Rohs, Remo

Predicting DNA structure using a deep learning method

NATURE COMMUNICATIONS

IF15.7

2024-02-09

OAAI

Li, Jinsen; Chiu, Tsu-Pei; Rohs, Remo

Probing the role of the protonation state of a minor groove-linker histidine in Exd-Hox-DNA binding

BIOPHYSICAL JOURNAL

IF3.1

2024-01-01

OAAI

Jiang, Yibei; Chiu, Tsu-Pei; Mitra, Raktim; Rohs, Remo

DNA binding specificity of all four Saccharomyces cerevisiae forkhead transcription factors

NUCLEIC ACIDS RESEARCH

IF13.1

2023-05-13

OAAI

Cooper, Brendon H.; Machado, Ana Carolina Dantas; Gan, Yan; Aparicio, Oscar M.; Rohs, Remo

Physicochemical models of protein-DNA binding with standard and modified base pairs

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2023-01-19

OAAI

Chiu, Tsu-Pei; Rao, Satyanarayan; Rohs, Remo

It is in the flanks: Conformational flexibility of transcription factor binding sites

BIOPHYSICAL JOURNAL

IF3.1

2022-10-01

OAAI

Chiu, Tsu-Pei; Li, Jinsen; Jiang, Yibei; Rohs, Remo

Genome information processing by the INO80 chromatin remodeler positions nucleosomes

NATURE COMMUNICATIONS

IF15.7

2021-05-28

OAAI

Oberbeckmann, Elisa; Krietenstein, Nils; Niebauer, Vanessa; Wang, Yingfei; Schall, Kevin; Moldt, Manuela; Straub, Tobias; Rohs, Remo; Hopfner, Karl-Peter; Korber, Philipp; Eustermann, Sebastian

Humanizing the yeast origin recognition complex

NATURE COMMUNICATIONS

IF15.7

2021-01-04

OAAI

Lee, Clare S. K.; Cheung, Ming Fung; Li, Jinsen; Zhao, Yongqian; Lam, Wai Hei; Ho, Vincy; Rohs, Remo; Zhai, Yuanliang; Leung, Danny; Tye, Bik-Kwoon

Regulatory encoding of quantitative variation in spatial activity of a Drosophila enhancer

SCIENCE ADVANCES

IF12.5

2020-12-04

OAAI

Le Poul, Yann; Xin, Yaqun; Ling, Liucong; Muhling, Bettina; Jaenichen, Rita; Horl, David; Bunk, David; Harz, Hartmann; Leonhardt, Heinrich; Wang, Yingfei; Osipova, Elena; Museridze, Mariam; Dharmadhikari, Deepak; Murphy, Eamonn; Rohs, Remo; Preibisch, Stephan; Prud'homme, Benjamin; Gompel, Nicolas

Landscape of DNA binding signatures of myocyte enhancer factor-2B reveals a unique interplay of base and shape readout

NUCLEIC ACIDS RESEARCH

IF13.1

2020-08-01

OAAI

Machado, Ana Carolina Dantas; Cooper, Brendon H.; Lei, Xiao; Di Felice, Rosa; Chen, Lin; Rohs, Remo

Epigenetic competition reveals density -dependent regulation and target site plasticity of phosphorothioate epigenetics in bacteria

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2020-06-09

OAAI

Wu, Xiaolin; Cao, Bo; Aquino, Patricia; Chiu, Tsu-Pei; Chen, Chao; Jiang, Susu; Deng, Zixin; Chen, Shi; Rohs, Remo; Wang, Lianrong; Galagan, James E.; Dedon, Peter C.

研究方向