未登录 The western redcedar genome reveals low genetic diversity in a self-compatible conifer Shalev, Tal J.; El-Dien, Omnia Gamal; Yuen, Macaire M. S.; Shengqiang, Shu; Jackman, Shaun D.; Warren, Rene L.; Coombe, Lauren; van der Merwe, Lise; Stewart, Ada; Boston, Lori B.; Plott, Christopher; Jenkins, Jerry; He, Guifen; Yan, Juying; Yan, Mi; Guo, Jie; Breinholt, Jesse W.; Neves, Leandro G.; Grimwood, Jane; Rieseberg, Loren H.; Schmutz, Jeremy; Birol, Inanc; Kirst, Matias; Yanchuk, Alvin D.; Ritland, Carol; Russell, John H.; Bohlmann, Joerg 分享 收藏
A robust benchmark for detection of germline large deletions and insertions (Jun, 10.1038/s41587-020-0538-8, 2020) 用于检测种系大缺失和插入的稳健基准 (6月，10.1038/s41587-020-0538-8，2020) Zook, Justin M.; Hansen, Nancy F.; Olson, Nathan D.; Chapman, Lesley; Mullikin, James C.; Xiao, Chunlin; Sherry, Stephen; Koren, Sergey; Phillippy, Adam M.; Boutros, Paul C.; Sahraeian, Sayed Mohammad E.; Huang, Vincent; Rouette, Alexandre; Alexander, Noah; Mason, Christopher E.; Hajirasouliha, Iman; Ricketts, Camir; Lee, Joyce; Tearle, Rick; Fiddes, Ian T.; Barrio, Alvaro Martinez; Wala, Jeremiah; Carroll, Andrew; Ghaffari, Noushin; Rodriguez, Oscar L.; Bashir, Ali; Jackman, Shaun; Farrell, John J.; Wenger, Aaron M.; Alkan, Can; Soylev, Arda; Schatz, Michael C.; Garg, Shilpa; Church, George; Marschall, Tobias; Chen, Ken; Fan, Xian; English, Adam C.; Rosenfeld, Jeffrey A.; Zhou, Weichen; Mills, Ryan E.; Sage, Jay M.; Davis, Jennifer R.; Kaiser, Michael D.; Oliver, John S.; Catalano, Anthony P.; Chaisson, Mark J. P.; Spies, Noah; Sedlazeck, Fritz J.; Salit, Marc 分享 收藏
A robust benchmark for detection of germline large deletions and insertions 用于检测种系大缺失和插入的可靠基准 Zook, Justin M.; Hansen, Nancy F.; Olson, Nathan D.; Chapman, Lesley; Mullikin, James C.; Xiao, Chunlin; Sherry, Stephen; Koren, Sergey; Phillippy, Adam M.; Boutros, Paul C.; Sahraeian, Sayed Mohammad E.; Huang, Vincent; Rouette, Alexandre; Alexander, Noah; Mason, Christopher E.; Hajirasouliha, Iman; Ricketts, Camir; Lee, Joyce; Tearle, Rick; Fiddes, Ian T.; Barrio, Alvaro Martinez; Wala, Jeremiah; Carroll, Andrew; Ghaffari, Noushin; Rodriguez, Oscar L.; Bashir, Ali; Jackman, Shaun; Farrell, John J.; Wenger, Aaron M.; Alkan, Can; Soylev, Arda; Schatz, Michael C.; Garg, Shilpa; Church, George; Marschall, Tobias; Chen, Ken; Fan, Xian; English, Adam C.; Rosenfeld, Jeffrey A.; Zhou, Weichen; Mills, Ryan E.; Sage, Jay M.; Davis, Jennifer R.; Kaiser, Michael D.; Oliver, John S.; Catalano, Anthony P.; Chaisson, Mark J. P.; Spies, Noah; Sedlazeck, Fritz J.; Salit, Marc 分享 收藏
Complete Mitochondrial Genome of a Gymnosperm, Sitka Spruce (Picea sitchensis), Indicates a Complex Physical Structure Jackman, Shaun D.; Coombe, Lauren; Warren, Rene L.; Kirk, Heather; Trinh, Eva; MacLeod, Tina; Pleasance, Stephen; Pandoh, Pawan; Zhao, Yongjun; Coope, Robin J.; Bousquet, Jean; Bohlmann, Joerg; Jones, Steven J. M.; Birol, Inanc 分享 收藏
ABySS 2.0: resource-efficient assembly of large genomes using a Bloom filter Jackman, Shaun D.; Vandervalk, Benjamin P.; Mohamadi, Hamid; Chu, Justin; Yeo, Sarah; Hammond, S. Austin; Jahesh, Golnaz; Khan, Hamza; Coombe, Lauren; Warren, Rene L.; Birol, Inanc 分享 收藏
Organellar Genomes of White Spruce (Picea glauca): Assembly and Annotation Jackman, Shaun D.; Warren, Rene L.; Gibb, Ewan A.; Vandervalk, Benjamin P.; Mohamadi, Hamid; Chu, Justin; Raymond, Anthony; Pleasance, Stephen; Coope, Robin; Wildung, Mark R.; Ritland, Carol E.; Bousquet, Jean; Jones, Steven J. M.; Bohlmann, Joerg; Birol, Inanc 分享 收藏
Improved white spruce (Picea glauca) genome assemblies and annotation of large gene families of conifer terpenoid and phenolic defense metabolism 改进的白云杉 (Picea glauca) 基因组组装和针叶树萜类和酚类防御代谢大基因家族的注释 Warren, Rene L.; Keeling, Christopher I.; Yuen, Macaire Man Saint; Raymond, Anthony; Taylor, Greg A.; Vandervalk, Benjamin P.; Mohamadi, Hamid; Paulino, Daniel; Chiu, Readman; Jackman, Shaun D.; Robertson, Gordon; Yang, Chen; Boyle, Brian; Hoffmann, Margarete; Weigel, Detlef; Nelson, David R.; Ritland, Carol; Isabel, Nathalie; Jaquish, Barry; Yanchuk, Alvin; Bousquet, Jean; Jones, Steven J. M.; MacKay, John; Birol, Inanc; Bohlmann, Joerg 分享 收藏
Barnacle: detecting and characterizing tandem duplications and fusions in transcriptome assemblies Swanson, Lucas; Robertson, Gordon; Mungall, Karen L.; Butterfield, Yaron S.; Chiu, Readman; Corbett, Richard D.; Docking, T. Roderick; Hogge, Donna; Jackman, Shaun D.; Moore, Richard A.; Mungall, Andrew J.; Nip, Ka Ming; Parker, Jeremy D. K.; Qian, Jenny Qing; Raymond, Anthony; Sung, Sandy; Tam, Angela; Thiessen, Nina; Varhol, Richard; Wang, Sherry; Yorukoglu, Deniz; Zhao, YongJun; Hoodless, Pamela A.; Sahinalp, S. Cenk; Karsan, Aly; Birol, Inanc 分享 收藏
Assemblathon 2: evaluating de novo methods of genome assembly in three vertebrate species Assemblathon 2: 评估三种脊椎动物物种基因组组装的从头方法 Bradnam, Keith R.; Fass, Joseph N.; Alexandrov, Anton; Baranay, Paul; Bechner, Michael; Birol, Inanc; Boisvert, Sebastien; Chapman, Jarrod A.; Chapuis, Guillaume; Chikhi, Rayan; Chitsaz, Hamidreza; Chou, Wen-Chi; Corbeil, Jacques; Del Fabbro, Cristian; Docking, T. Roderick; Durbin, Richard; Earl, Dent; Emrich, Scott; Fedotov, Pavel; Fonseca, Nuno A.; Ganapathy, Ganeshkumar; Gibbs, Richard A.; Gnerre, Sante; Godzaridis, Elenie; Goldstein, Steve; Haimel, Matthias; Hall, Giles; Haussler, David; Hiatt, Joseph B.; Ho, Isaac Y.; Howard, Jason; Hunt, Martin; Jackman, Shaun D.; Jaffe, David B.; Jarvis, Erich D.; Jiang, Huaiyang; Kazakov, Sergey; Kersey, Paul J.; Kitzman, Jacob O.; Knight, James R.; Koren, Sergey; Lam, Tak-Wah; Lavenier, Dominique; Laviolette, Francois; Li, Yingrui; Li, Zhenyu; Liu, Binghang; Liu, Yue; Luo, Ruibang; MacCallum, Iain; MacManes, Matthew D.; Maillet, Nicolas; Melnikov, Sergey; Naquin, Delphine; Ning, Zemin; Otto, Thomas D.; Paten, Benedict; Paulo, Octavio S.; Phillippy, Adam M.; Pina-Martins, Francisco; Place, Michael; Przybylski, Dariusz; Qin, Xiang; Qu, Carson; Ribeiro, Filipe J.; Richards, Stephen; Rokhsar, Daniel S.; Ruby, J. Graham; Scalabrin, Simone; Schatz, Michael C.; Schwartz, David C.; Sergushichev, Alexey; Sharpe, Ted; Shaw, Timothy I.; Shendure, Jay; Shi, Yujian; Simpson, Jared T.; Song, Henry; Tsarev, Fedor; Vezzi, Francesco; Vicedomini, Riccardo; Vieira, Bruno M.; Wang, Jun; Worley, Kim C.; Yin, Shuangye; Yiu, Siu-Ming; Yuan, Jianying; Zhang, Guojie; Zhang, Hao; Zhou, Shiguo; Korf, Ian F. 分享 收藏
The genome and transcriptome of the pine saprophyte Ophiostoma piceae, and a comparison with the bark beetle-associated pine pathogen Grosmannia clavigera Haridas, Sajeet; Wang, Ye; Lim, Lynette; Alamouti, Sepideh Massoumi; Jackman, Shaun; Docking, Rod; Robertson, Gordon; Birol, Inanc; Bohlmann, Joerg; Breuil, Colette 分享 收藏
Draft genome of the mountain pine beetle, Dendroctonus ponderosae Hopkins, a major forest pest Keeling, Christopher I.; Yuen, Macaire M. S.; Liao, Nancy Y.; Docking, T. Roderick; Chan, Simon K.; Taylor, Greg A.; Palmquist, Diana L.; Jackman, Shaun D.; Anh Nguyen; Li, Maria; Henderson, Hannah; Janes, Jasmine K.; Zhao, Yongjun; Pandoh, Pawan; Moore, Richard; Sperling, Felix A. H.; Huber, Dezene P. W.; Birol, Inanc; Jones, Steven J. M.; Bohlmann, Joerg 分享 收藏
Concurrent CIC mutations, IDH mutations, and 1p/19q loss distinguish oligodendrogliomas from other cancers Yip, Stephen; Butterfield, Yaron S.; Morozova, Olena; Chittaranjan, Suganthi; Blough, Michael D.; An, Jianghong; Birol, Inanc; Chesnelong, Charles; Chiu, Readman; Chuah, Eric; Corbett, Richard; Docking, Rod; Firme, Marlo; Hirst, Martin; Jackman, Shaun; Karsan, Aly; Li, Haiyan; Louis, David N.; Maslova, Alexandra; Moore, Richard; Moradian, Annie; Mungall, Karen L.; Perizzolo, Marco; Qian, Jenny; Roldan, Gloria; Smith, Eric E.; Tamura-Wells, Jessica; Thiessen, Nina; Varhol, Richard; Weiss, Samuel; Wu, Wei; Young, Sean; Zhao, Yongjun; Mungall, Andrew J.; Jones, Steven J. M.; Morin, Gregg B.; Chan, Jennifer A.; Cairncross, J. Gregory; Marra, Marco A. 分享 收藏
Updated genome assembly and annotation of Paenibacillus larvae, the agent of American foulbrood disease of honey bees Chan, Queenie W. T.; Cornman, R. Scott; Birol, Inanc; Liao, Nancy Y.; Chan, Simon K.; Docking, T. Roderick; Jackman, Shaun D.; Taylor, Greg A.; Jones, Steven J. M.; de Graaf, Dirk C.; Evans, Jay D.; Foster, Leonard J. 分享 收藏
Assemblathon 1: A competitive assessment of de novo short read assembly methods Earl, Dent; Bradnam, Keith; St John, John; Darling, Aaron; Lin, Dawei; Fass, Joseph; Hung On Ken Yu; Buffalo, Vince; Zerbino, Daniel R.; Diekhans, Mark; Ngan Nguyen; Ariyaratne, Pramila Nuwantha; Sung, Wing-Kin; Ning, Zemin; Haimel, Matthias; Simpson, Jared T.; Fonseca, Nuno A.; Birol, Inanc; Docking, T. Roderick; Ho, Isaac Y.; Rokhsar, Daniel S.; Chikhi, Rayan; Lavenier, Dominique; Chapuis, Guillaume; Naquin, Delphine; Maillet, Nicolas; Schatz, Michael C.; Kelley, David R.; Phillippy, Adam M.; Koren, Sergey; Yang, Shiaw-Pyng; Wu, Wei; Chou, Wen-Chi; Srivastava, Anuj; Shaw, Timothy I.; Ruby, J. Graham; Skewes-Cox, Peter; Betegon, Miguel; Dimon, Michelle T.; Solovyev, Victor; Seledtsov, Igor; Kosarev, Petr; Vorobyev, Denis; Ramirez-Gonzalez, Ricardo; Leggett, Richard; MacLean, Dan; Xia, Fangfang; Luo, Ruibang; Li, Zhenyu; Xie, Yinlong; Liu, Binghang; Gnerre, Sante; MacCallum, Iain; Przybylski, Dariusz; Ribeiro, Filipe J.; Yin, Shuangye; Sharpe, Ted; Hall, Giles; Kersey, Paul J.; Durbin, Richard; Jackman, Shaun D.; Chapman, Jarrod A.; Huang, Xiaoqiu; DeRisi, Joseph L.; Caccamo, Mario; Li, Yingrui; Jaffe, David B.; Green, Richard E.; Haussler, David; Korf, Ian; Paten, Benedict 分享 收藏
De novo assembly and analysis of RNA-seq data Robertson, Gordon; Schein, Jacqueline; Chiu, Readman; Corbett, Richard; Field, Matthew; Jackman, Shaun D.; Mungall, Karen; Lee, Sam; Okada, Hisanaga Mark; Qian, Jenny Q.; Griffith, Malachi; Raymond, Anthony; Thiessen, Nina; Cezard, Timothee; Butterfield, Yaron S.; Newsome, Richard; Chan, Simon K.; She, Rong; Varhol, Richard; Kamoh, Baljit; Prabhu, Anna-Liisa; Tam, Angela; Zhao, YongJun; Moore, Richard A.; Hirst, Martin; Marra, Marco A.; Jones, Steven J. M.; Hoodless, Pamela A.; Birol, Inanc 分享 收藏
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