António J. M. Ribeiro - Publications, H-index & Citations

António J. M. Ribeiro

European Bioinformatics Institute

25H指数

63论文数

2.2K被引数

收录论文 30

发表时间

Investigating enzyme function by geometric matching of catalytic motifs 通过几何匹配催化基序研究酶的功能

Protein Science

IF5.2

2026-08-11

OAAI

Raymund E. Hackett; Ioannis G. Riziotis; Martin Larralde; António J. M. Ribeiro; Georg Zeller; Janet M. Thornton

A structural perspective on enzymes and their catalytic mechanisms 从结构角度探讨酶及其催化机制

CURRENT OPINION IN STRUCTURAL BIOLOGY

IF7

2025-06-01

OAAI

Borkakoti, Neera; Ribeiro, Antonio J. M.; Thornton, Janet M.

Measuring catalytic mechanism similarity - a new approach to study enzyme function and evolution 测量催化机制相似性——研究酶功能与进化的新方法

FEBS JOURNAL

IF4.2

2025-04-22

PREAI

Antonio J. M. Ribeiro; Ioannis G. Riziotis; Neera Borkakoti; Pedro A. Fernandes; Maria J. Ramos; Janet M. Thornton

Paradigms of convergent evolution in enzymes 酶的趋同进化范式

FEBS JOURNAL

IF4.2

2024-11-22

OAAI

Riziotis, Ioannis G.; Kafas, Jenny C.; Ong, Gabriel; Borkakoti, Neera; Ribeiro, Antonio J. M.; Thornton, Janet M.

Enzyme function and evolution through the lens of bioinformatics 生物信息学视角下的酶功能与进化

BIOCHEMICAL JOURNAL

IF4.3

2023-11-22

OAAI

Ribeiro, Antonio J. M.; Riziotis, Ioannis G.; Borkakoti, Neera; Thornton, Janet M.

EzMechanism: an automated tool to propose catalytic mechanisms of enzyme reactions Ez机制: 提出酶反应催化机制的自动化工具

NATURE METHODS

IF32.1

2023-09-21

OAAI

Ribeiro, Antonio J. M.; Riziotis, Ioannis G.; Tyzack, Jonathan D.; Borkakoti, Neera; Thornton, Janet M.

GRaSP-web: a machine learning strategy to predict binding sites based on residue neighborhood graphs Grasb-web: 一种基于残基邻域图预测结合位点的机器学习策略

NUCLEIC ACIDS RESEARCH

IF13.1

2022-05-07

OAAI

Santana, Charles A.; Izidoro, Sandro C.; De Melo-Minardi, Raquel C.; Tyzack, Jonathan D.; Ribeiro, Antonio J. M.; Pires, Douglas E., V; Thornton, Janet M.; Silveira, Sabrina de A.

The Enzyme Portal: an integrative tool for enzyme information and analysis 酶门户: 酶信息和分析的综合工具

FEBS JOURNAL

IF4.2

2021-09-03

OAAI

Zaru, Rossana; Onwubiko, Joseph; Ribeiro, Antonio J. M.; Cochrane, Keeva; Tyzack, Jonathan D.; Muthukrishnan, Venkatesh; Pravda, Lukas; Thornton, Janet M.; O'Donovan, Claire; Velanker, Sameer; Orchard, Sandra; Leach, Andrew; Martin, Maria J.

Immune profiles in acute myeloid leukemia bone marrow associate with patient age, T-cell receptor clonality, and survival

BLOOD ADVANCES

IF7.1

2020-01-22

OAAI

Bruck, Oscar; Dufva, Olli; Hohtari, Helena; Blom, Sami; Turkki, Riku; Ilander, Mette; Kovanen, Panu; Pallaud, Celine; Ramos, Pedro Marques; Lahteenmaki, Hanna; Valimaki, Katja; El Missiry, Mohamed; Ribeiro, Antonio; Kallioniemi, Olli; Porkka, Kimmo; Pellinen, Teijo; Mustjoki, Satu

A global analysis of function and conservation of catalytic residues in enzymes

JOURNAL OF BIOLOGICAL CHEMISTRY

IF3.9

2020-01-01

OAAI

Ribeiro, Antonio J. M.; Tyzack, Jonathan D.; Borkakoti, Neera; Holliday, Gemma L.; Thornton, Janet M.

Identifying pseudoenzymes using functional annotation. How loss of function correlates with mutations in the catalytic site

FEBS JOURNAL

IF4.2

2019-12-05

OAAI

Ribeiro, Antonio J. M.; Tyzack, Jonathan D.; Borkakoti, Neera; Thornton, Janet M.

Exploring Chemical Biosynthetic Design Space with Transform-MinER

ACS SYNTHETIC BIOLOGY

IF3.9

2019-10-24

OAAI

Tyzack, Jonathan D.; Ribeiro, Antonio J. M.; Borkakoti, Neera; Thornton, Janet M.

PDBe-KB: a community-driven resource for structural and functional annotations

NUCLEIC ACIDS RESEARCH

IF13.1

2019-10-04

OAAI

Varadi, Mihaly; Bcrrisford, John; Deshpande, Mandar; Nair, Sreenath S.; Gutmanas, Aleksandras; Armstrong, David; Pravda, Lukas; Al-Lazikani, Bissan; Anyango, Stephen; Barton, Geoffrey J.; Berka, Karel; Blundell, Tom; Borkakoti, Neera; Dana, Jose; Das, Sayoni; Dey, Sucharita; Di Micco, Patrizio; Fraternali, Franca; Gibson, Toby; Helmer-Citterich, Manuela; Hoksza, David; Huang, Liang-Chin; Jain, Rishabh; Jubb, Harry; Kannas, Christos; Kannan, Natarajan; Koca, Jaroslav; Krivak, Radoslav; Kumar, Manjeet; Levy, Emmanuel D.; Madeira, F.; Madhusudhan, M. S.; Martell, Henry J.; MacGowan, Stuart; McGreig, Jake E.; Mir, Saqib; Mukhopadhyay, Abhik; Parca, Luca; Paysan-Lafosse, Typhaine; Radusky, Leandro; Ribeiro, Antonio; Serrano, Luis; Sillitoe, Ian; Singh, Gulzar; Skoda, Petr; Svobodova, Radka; Tyzack, Jonathan; Valencia, Alfonso; Fernandez, Eloy Villasclaras; Vranken, Wim; Wass, Mark; Thornton, Janet; Sternberg, Michael; Orengo, Christine; Velankar, Sameer

Emerging concepts in pseudoenzyme classification, evolution, and signaling

SCIENCE SIGNALING

IF6.6

2019-08-13

PREAI

Ribeiro, Antonio J. M.; Das, Sayoni; Dawson, Natalie; Zaru, Rossana; Orchard, Sandra; Thornton, Janet M.; Orengo, Christine; Zeqiraj, Elton; Murphy, James M.; Eyers, Patrick A.

Immune cell contexture in the bone marrow tumor microenvironment impacts therapy response in CML

LEUKEMIA

IF13.4

2018-06-20

OAAI

Bruck, Oscar; Blom, Sami; Dufva, Olli; Turkki, Riku; Chheda, Himanshu; Ribeiro, Antonio; Kovanen, Panu; Aittokallio, Tero; Koskenvesa, Perttu; Kallioniemi, Olli; Porkka, Kimmo; Pellinen, Teijo; Mustjoki, Satu

Mechanism and Catalytic Site Atlas (M-CSA): a database of enzyme reaction mechanisms and active sites

NUCLEIC ACIDS RESEARCH

IF13.1

2017-11-02

148

OAAI

Ribeiro, Antonio J. M.; Holliday, Gemma L.; Furnham, Nicholas; Tyzack, Jonathan D.; Ferris, Katherine; Thornton, Janet M.

cuRRBS: simple and robust evaluation of enzyme combinations for reduced representation approaches

NUCLEIC ACIDS RESEARCH

IF13.1

2017-09-19

OAAI

Martin-Herranz, Daniel E.; Ribeiro, Antonio J. M.; Krueger, Felix; Thornton, Janet M.; Reik, Wolf; Stubbs, Thomas M.

Unique Triphenylphosphonium Derivatives for Enhanced Mitochondrial Uptake and Photodynamic Therapy 独特的三苯基鳞衍生物，用于增强线粒体摄取和光动力疗法

BIOCONJUGATE CHEMISTRY

IF3.9

2017-01-18

PREAI

Hu, Zhang; Sim, Ying; Kon, Oi Lian; Ng, Wai Har; Ribeiro, Antonio J. M.; Ramos, Maria J.; Fernandes, Pedro A.; Ganguly, Rakesh; Xing, Bengang; Garcia, Felipe; Yeow, Edwin K. L.

Binding free energy calculations on E-selectin complexes with sLex oligosaccharide analogs

CHEMICAL BIOLOGY & DRUG DESIGN

IF3.3

2016-09-21

PREAI

Barra, Pabla A.; Ribeiro, Antonio J. M.; Ramos, Maria J.; Jimenez, Veronica A.; Alderete, Joel B.; Fernandes, Pedro A.

Application of quantum mechanics/molecular mechanics methods in the study of enzymatic reaction mechanisms

WILEY INTERDISCIPLINARY REVIEWS-COMPUTATIONAL MOLECULAR SCIENCE

IF27

2016-09-01

177

OAAI

Sousa, Sergio Filipe; Ribeiro, Antnio J. M.; Neves, Rui P. P.; Bras, Natercia F.; Cerqueira, Nuno M. F. S. A.; Fernandes, Pedro A.; Ramos, Maria Joao

研究方向