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M

Mattia Bernetti

istituto italiano di tecnologia - iit

14H指数
47论文数
2.0K被引数
收录论文 22
发表时间
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Critical Assessment of a Structure-Based Pipeline for Targeting the Long Noncoding RNA MALAT1基于结构的靶向长链非编码RNA MALAT1的流程的严格评估
errJournal of Chemical Information and Modeling
IF5.3
err2026-03-01
err0
errOAAI
errAguti, Riccardo; Bernetti, Mattia; Elisi, Gian Marco; Cavalli, Andrea; Masetti, Matteo
err分享
err收藏
Dissecting the RAD51–BRC4 Interaction Landscape through Integrative Molecular Simulations and Experimental Biophysics通过整合分子模拟和实验生物物理学方法解析RAD51–BRC4相互作用景观
errJournal of Chemical Information and Modeling
IF5.3
err2025-10-22
err0
errOAAI
errVeronica Bresciani; Francesco Rinaldi; Pedro Franco; Stefania Girotto; Andrea Cavalli; Julian D. Langer; Matteo Masetti; Mattia Bernetti
err分享
err收藏
Application of Deep Learning to Predict the Persistence, Bioaccumulation, and Toxicity of Pharmaceuticals深度学习在预测药物持久性、生物累积性和毒性中的应用
errJOURNAL OF CHEMICAL INFORMATION AND MODELING
IF5.3
err2025-04-03
err0
errOAAI
errEvangelista, Dominga; Nelson, Elliot; Skyner, Rachael; Tehan, Ben; Bernetti, Mattia; Roberti, Marinella
err分享
err收藏
PLUMED Tutorials: A collaborative, community-driven learning ecosystemPLUMED教程: 一个协作的，社区驱动的学习生态系统
errJOURNAL OF CHEMICAL PHYSICS
IF3.1
err2025-03-07
err1
PREAI
errTribello, Gareth A.; Bonomi, Massimiliano; Bussi, Giovanni; Camilloni, Carlo; Armstrong, Blake I.; Arsiccio, Andrea; Aureli, Simone; Ballabio, Federico; Bernetti, Mattia; Bonati, Luigi; Brookes, Samuel G. H.; Brotzakis, Z. Faidon; Capelli, Riccardo; Ceriotti, Michele; Chan, Kam-Tung; Cossio, Pilar; Dasetty, Siva; Donadio, Davide; Ensing, Bernd; Ferguson, Andrew L.; Fraux, Guillaume; Gale, Julian D.; Gervasio, Francesco Luigi; Giorgino, Toni; Herringer, Nicholas S. M.; Hocky, Glen M.; Hoff, Samuel E.; Invernizzi, Michele; Languin-Cattoen, Olivier; Leone, Vanessa; Limongelli, Vittorio; Lopez-Acevedo, Olga; Marinelli, Fabrizio; Febrer Martinez, Pedro; Masetti, Matteo; Mehdi, Shams; Michaelides, Angelos; Murtada, Mhd Hussein; Parrinello, Michele; Piaggi, Pablo M.; Pietropaolo, Adriana; Pietrucci, Fabio; Pipolo, Silvio; Pritchard, Claire; Raiteri, Paolo; Raniolo, Stefano; Rapetti, Daniele; Rizzi, Valerio; Rydzewski, Jakub; Salvalaglio, Matteo; Schran, Christoph; Seal, Aniruddha; Shayesteh Zadeh, Armin; Silva, Tomas F. D.; Spiwok, Vojtech; Stirnemann, Guillaume; Sucerquia, Daniel; Tiwary, Pratyush; Valsson, Omar; Vendruscolo, Michele; Voth, Gregory A.; White, Andrew D.; Wu, Jiangbo
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err收藏
Probing allosteric communication with combined molecular dynamics simulations and network analysis
errCURRENT OPINION IN STRUCTURAL BIOLOGY
IF7
err2024-06-01
err3
errOAAI
errBernetti, Mattia; Bosio, Stefano; Bresciani, Veronica; Falchi, Federico; Masetti, Matteo
err分享
err收藏
Similarities and Differences in Ligand Binding to Protein and RNA Targets: The Case of Riboflavin
errJOURNAL OF CHEMICAL INFORMATION AND MODELING
IF5.3
err2024-05-27
err0
PREAI
errBosio, Stefano; Bernetti, Mattia; Rocchia, Walter; Masetti, Matteo
err分享
err收藏
Molecular Dynamics Simulations with Grand-Canonical Reweighting Suggest Cooperativity Effects in RNA Structure Probing Experiments具有大规范重新加权的分子动力学模拟表明RNA结构探测实验中的协同作用
errJOURNAL OF CHEMICAL THEORY AND COMPUTATION
IF5.5
err2023-06-08
err1
errOAAI
errCalonaci, Nicola; Bernetti, Mattia; Jones, Alisha; Sattler, Michael; Bussi, Giovanni
err分享
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Simultaneous refinement of molecular dynamics ensembles and forward models using experimental data使用实验数据同时改进分子动力学集合和正向模型
errJOURNAL OF CHEMICAL PHYSICS
IF3.1
err2023-06-05
err2
errOAAI
errFrohlking, Thorben; Bernetti, Mattia; Bussi, Giovanni
err分享
err收藏
On the allosteric puzzle and pocket crosstalk through computational means
errJOURNAL OF CHEMICAL PHYSICS
IF3.1
err2023-04-24
err6
PREAI
errAguti, Riccardo; Bernetti, Mattia; Bosio, Stefano; Decherchi, Sergio; Cavalli, Andrea
err分享
err收藏
Integrating experimental data with molecular simulations to investigate RNA structural dynamics将实验数据与分子模拟相结合以研究RNA结构动力学
errCURRENT OPINION IN STRUCTURAL BIOLOGY
IF7
err2023-02-01
err14
errOAAI
errBernetti, Mattia; Bussi, Giovanni
err分享
err收藏
Molecular Simulations Matching Denaturation Experiments for N6-MethyladenosineN6-Methyladenosine变性实验匹配的分子模拟
errACS CENTRAL SCIENCE
IF10.4
err2022-08-03
err6
errOAAI
errPiomponi, Valerio; Froehlking, Thorben; Bernetti, Mattia; Bussi, Giovanni
err分享
err收藏
Reweighting of molecular simulations with explicit-solvent SAXS restraints elucidates ion-dependent RNA ensembles具有显式溶剂SAXS约束的分子模拟的重新加权阐明了离子依赖性RNA系综
errNUCLEIC ACIDS RESEARCH
IF13.1
err2021-06-09
err23
errOAAI
errBernetti, Mattia; Hall, Kathleen B.; Bussi, Giovanni
err分享
err收藏
Data-Driven Molecular Dynamics: A Multifaceted Challenge
errPHARMACEUTICALS
IF4.8
err2020-09-18
err23
errOAAI
errBernetti, Mattia; Bertazzo, Martina; Masetti, Matteo
err分享
err收藏
Pressure control using stochastic cell rescaling使用随机单元重新缩放的压力控制
errJOURNAL OF CHEMICAL PHYSICS
IF3.1
err2020-09-16
err235
errOAAI
errBernetti, Mattia; Bussi, Giovanni
err分享
err收藏
Toward empirical force fields that match experimental observables
errJOURNAL OF CHEMICAL PHYSICS
IF3.1
err2020-06-17
err59
errOAAI
errFrohlking, Thorben; Bernetti, Mattia; Calonaci, Nicola; Bussi, Giovanni
err分享
err收藏
An Integrated Markov State Model and Path Metadynamics Approach To Characterize Drug Binding Processes
errJOURNAL OF CHEMICAL THEORY AND COMPUTATION
IF5.5
err2019-08-22
err49
PREAI
errBernetti, Mattia; Masetti, Matteo; Recanatini, Maurizio; Amaro, Rommie E.; Cavalli, Andrea
err分享
err收藏
Promoting transparency and reproducibility in enhanced molecular simulations提高增强分子模拟的透明度和再现性
errNATURE METHODS
IF32.1
err2019-07-30
err715
errOAAI
errBonomi, Massimiliano; Bussi, Giovanni; Camilloni, Carlo; Tribello, Gareth A.; Banas, Pavel; Barducci, Alessandro; Bernetti, Mattia; Bolhuis, Peter G.; Bottaro, Sandro; Branduardi, Davide; Capelli, Riccardo; Carloni, Paolo; Ceriotti, Michele; Cesari, Andrea; Chen, Haochuan; Chen, Wei; Colizzi, Francesco; De, Sandip; De La Pierre, Marco; Donadio, Davide; Drobot, Viktor; Ensing, Bernd; Ferguson, Andrew L.; Filizola, Marta; Fraser, James S.; Fu, Haohao; Gasparotto, Piero; Gervasio, Francesco Luigi; Giberti, Federico; Gil-Ley, Alejandro; Giorgino, Toni; Heller, Gabriella T.; Hocky, Glen M.; Iannuzzi, Marcella; Invernizzi, Michele; Jelfs, Kim E.; Jussupow, Alexander; Kirilin, Evgeny; Laio, Alessandro; Limongelli, Vittorio; Lindorff-Larsen, Kresten; Lohr, Thomas; Marinelli, Fabrizio; Martin-Samos, Layla; Masetti, Matteo; Meyer, Ralf; Michaelides, Angelos; Molteni, Carla; Morishita, Tetsuya; Nava, Marco; Paissoni, Cristina; Papaleo, Elena; Parrinello, Michele; Pfaendtner, Jim; Piaggi, Pablo; Piccini, GiovanniMaria; Pietropaolo, Adriana; Pietrucci, Fabio; Pipolo, Silvio; Provasi, Davide; Quigley, David; Raiteri, Paolo; Raniolo, Stefano; Rydzewski, Jakub; Salvalaglio, Matteo; Sosso, Gabriele Cesare; Spiwok, Vojtech; Sponer, Jiri; Swenson, David W. H.; Tiwary, Pratyush; Valsson, Omar; Vendruscolo, Michele; Voth, Gregory A.; White, Andrew
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err收藏
Kinetics of Drug Binding and Residence Time
errANNUAL REVIEW OF PHYSICAL CHEMISTRY
IF0
err2019-06-14
err111
PREAI
errBernetti, Mattia; Masetti, Matteo; Rocchia, Walter; Cavalli, Andrea
err分享
err收藏
Predicting Residence Time and Drug Unbinding Pathway through Scaled Molecular Dynamics
errJOURNAL OF CHEMICAL INFORMATION AND MODELING
IF5.3
err2018-11-30
err58
PREAI
errSchuetz, Doris A.; Bernetti, Mattia; Bertazzo, Martina; Musil, Djordje; Eggenweiler, Hans-Michael; Recanatini, Maurizio; Masetti, Matteo; Ecker, Gerhard F.; Cavalli, Andrea
err分享
err收藏
Binding Residence Time through Scaled Molecular Dynamics: A Prospective Application to hDAAO Inhibitors
errJOURNAL OF CHEMICAL INFORMATION AND MODELING
IF5.3
err2018-10-19
err19
PREAI
errBernetti, Mattia; Rosini, Elena; Mollica, Luca; Masetti, Matteo; Pollegioni, Loredano; Recanatini, Maurizio; Cavalli, Andrea
err分享
err收藏

研究方向

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合作学者
合作期刊
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Michele Parrinello
H 指数: 155 · 论文数: 924
M
Michele Vendruscolo
H 指数: 118 · 论文数: 1.1K
G
Gregory A. Voth
H 指数: 114 · 论文数: 988
J
Jiřı́ Šponer
H 指数: 87 · 论文数: 641
A
Angelos Michaelides
H 指数: 84 · 论文数: 399
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