M. Boniecki

miedzynarodowy instytut biologii molekularnej i komorkowej

H指数:23

被引数:2,525

个人简介

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教育背景

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荣誉奖项

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RNA-Puzzles Round V: blind predictions of 23 RNA structures

NATURE METHODS

IF32.1

2024-12-020

OAAI

Bu, Fan; Adam, Yagoub; Adamiak, Ryszard W.; Antczak, Maciej; de Aquino, Belisa Rebeca H.; Badepally, Nagendar Goud; Batey, Robert T.; Baulin, Eugene F.; Boinski, Pawel; Boniecki, Michal J.; Bujnicki, Janusz M.; Carpenter, Kristy A.; Chacon, Jose; Chen, Shi-Jie; Chiu, Wah; Cordero, Pablo; Das, Naba Krishna; Das, Rhiju; Dawson, Wayne K.; Dimaio, Frank; Ding, Feng; Dock-Bregeon, Anne-Catherine; Dokholyan, Nikolay V.; Dror, Ron O.; Dunin-Horkawicz, Stanislaw; Eismann, Stephan; Ennifar, Eric; Esmaeeli, Reza; Farsani, Masoud Amiri; Ferre-D'Amare, Adrian R.; Geniesse, Caleb; Ghanim, George E.; Guzman, Horacio V.; Hood, Iris V.; Huang, Lin; Jain, Dharm Skandh; Jaryani, Farhang; Jin, Lei; Joshi, Astha; Karelina, Masha; Kieft, Jeffrey S.; Kladwang, Wipapat; Kmiecik, Sebastian; Koirala, Deepak; Kollmann, Markus; Kretsch, Rachael C.; Kurcinski, Mateusz; Li, Jun; Li, Shuang; Magnus, Marcin; Masquida, Benoit; Moafinejad, S. Naeim; Mondal, Arup; Mukherjee, Sunandan; Nguyen, Thi Hoang Duong; Nikolaev, Grigory; Nithin, Chandran; Nye, Grace; Pandaranadar Jeyeram, Iswarya P. N.; Perez, Alberto; Pham, Phillip; Piccirilli, Joseph A.; Pilla, Smita Priyadarshini; Pluta, Radoslaw; Poblete, Simon; Ponce-Salvatierra, Almudena; Popenda, Mariusz; Popenda, Lukasz; Pucci, Fabrizio; Rangan, Ramya; Ray, Angana; Ren, Aiming; Sarzynska, Joanna; Sha, Congzhou Mike; Stefaniak, Filip; Su, Zhaoming; Suddala, Krishna C.; Szachniuk, Marta; Townshend, Raphael; Trachman III, Robert J.; Wang, Jian; Wang, Wenkai; Watkins, Andrew; Wirecki, Tomasz K.; Xiao, Yi; Xiong, Peng; Xiong, Yiduo; Yang, Jianyi; Yesselman, Joseph David; Zhang, Jinwei; Zhang, Yi; Zhang, Zhenzhen; Zhou, Yuanzhe; Zok, Tomasz; Zhang, Dong; Zhang, Sicheng; Zyla, Adriana; Westhof, Eric; Miao, Zhichao

SimRNAweb v2.0: a web server for RNA folding simulations and 3D structure modeling, with optional restraints and enhanced analysis of folding trajectories

NUCLEIC ACIDS RESEARCH

IF13.1

2024-05-136

OAAI

RNAProbe: a web server for normalization and analysis of RNA structure probing data

NUCLEIC ACIDS RESEARCH

IF13.1

2020-06-069

OAAI

RNA-Puzzles Round IV: 3D structure predictions of four ribozymes and two aptamers

RNA

IF5

2020-05-05103

OAAI

Miao, Zhichao; Adamiak, Ryszard W.; Antczak, Maciej; Boniecki, Michal J.; Bujnicki, Janusz; Chen, Shi-Jie; Cheng, Clarence Yu; Cheng, Yi; Chou, Fang-Chieh; Das, Rhiju; Dokholyan, Nikolay, V; Ding, Feng; Geniesse, Caleb; Jiang, Yangwei; Joshi, Astha; Krokhotin, Andrey; Magnus, Marcin; Mailhot, Olivier; Major, Francois; Mann, Thomas H.; Piatkowski, Pawel; Pluta, Radoslaw; Popenda, Mariusz; Sarzynska, Joanna; Sun, Lizhen; Szachniuk, Marta; Tian, Siqi; Wang, Jian; Wang, Jun; Watkins, Andrew M.; Wiedemann, Jakub; Xiao, Yi; Xu, Xiaojun; Yesselman, Joseph D.; Zhang, Dong; Zhang, Yi; Zhang, Zhenzhen; Zhao, Chenhan; Zhao, Peinan; Zhou, Yuanzhe; Zok, Tomasz; Zyla, Adriana; Ren, Aiming; Batey, Robert T.; Golden, Barbara L.; Huang, Lin; Lilley, David M.; Liu, Yijin; Patel, Dinshaw J.; Westhof, Eric

RNArchitecture: a database and a classification system of RNA families, with a focus on structural information

NUCLEIC ACIDS RESEARCH

IF13.1

2017-10-2323

OAAI

RNA-Puzzles Round III: 3D RNA structure prediction of five riboswitches and one ribozyme

RNA

IF5

2017-01-30163

OAAI

Miao, Zhichao; Adamiak, Ryszard W.; Antczak, Maciej; Batey, Robert T.; Becka, Alexander J.; Biesiada, Marcin; Boniecki, Michat J.; Bujnicki, Janusz M.; Chen, Shi-Jie; Cheng, Clarence Yu; Chou, Fang-Chieh; Ferre-D'Amare, Adrian R.; Das, Rhiju; Dawson, Wayne K.; Ding, Feng; Dokholyan, Nikolay V.; Dunin-Horkawicz, Stanistaw; Geniesse, Caleb; Kappel, Kalli; Kladwang, Wipapat; Krokhotin, Andrey; Lach, Grzegorz E.; Major, Francois; Mann, Thomas H.; Magnus, Marcin; Pachulska-Wieczorek, Katarzyna; Patel, Dinshaw J.; Piccirilli, Joseph A.; Popenda, Mariusz; Purzycka, Katarzyna J.; Ren, Aiming; Rice, Greggory M.; Santalucia, John, Jr.; Sarzynska, Joanna; Szachniuk, Marta; Tandon, Arpit; Trausch, Jeremiah J.; Tian, Siqi; Wang, Jian; Weeks, Kevin M.; Williams, Benfeard, II; Xiao, Yi; Xu, Xiaojun; Zhang, Dong; Zok, Tomasz; Westhof, Eric

SimRNAweb: a web server for RNA 3D structure modeling with optional restraints

NUCLEIC ACIDS RESEARCH

IF13.1

2016-04-19104

OAAI

SimRNA: a coarse-grained method for RNA folding simulations and 3D structure prediction

NUCLEIC ACIDS RESEARCH

IF13.1

2015-12-19287

OAAI

RNA-Puzzles Round II: assessment of RNA structure prediction programs applied to three large RNA structures

RNA

IF5

2015-04-16158

OAAI

Miao, Zhichao; Adamiak, Ryszard W.; Blanchet, Marc-Frederick; Boniecki, Michal; Bujnicki, Janusz M.; Chen, Shi-Jie; Cheng, Clarence; Chojnowski, Grzegorz; Chou, Fang-Chieh; Cordero, Pablo; Cruz, Jose Almeida; Ferre-D'amare, Adrian R.; Das, Rhiju; Ding, Feng; Dokholyan, Nikolay V.; Dunin-Horkawicz, Stanislaw; Kladwang, Wipapat; Krokhotin, Andrey; Lach, Grzegorz; Magnus, Marcin; Major, Francois; Mann, Thomas H.; Masquida, Benoit; Matelska, Dorota; Meyer, Melanie; Peselis, Alla; Popenda, Mariusz; Purzycka, Katarzyna J.; Serganov, Alexander; Stasiewicz, Juliusz; Szachniuk, Marta; Tandon, Arpit; Tian, Siqi; Wang, Jian; Xia, Yi; Xu, Xiaojun; Zhang, Jinwei; Zha, Peinan; Zok, Tomasz; Westhof, Eric

Mechanical behavior of diamond matrix composites with ceramic Ti3(Si, Ge)C2 bonding phase

INTERNATIONAL JOURNAL OF REFRACTORY METALS & HARD MATERIALS

IF4.6

2015-03-0117

PREAI

Computational modeling of RNA 3D structures, with the aid of experimental restraints

RNA BIOLOGY

IF3.4

2014-04-2336

OAAI

Solution conformation of adenovirus virus associated RNA-I and its interaction with PKR

JOURNAL OF STRUCTURAL BIOLOGY

IF5.1

2014-01-0126

PREAI

S6:S18 ribosomal protein complex interacts with a structural motif present in its own mRNA

RNA

IF5

2013-08-2618

OAAI

Rational engineering of sequence specificity in R.MwoI restriction endonuclease

NUCLEIC ACIDS RESEARCH

IF13.1

2012-06-255

OAAI

RNA-Puzzles: A CASP-like evaluation of RNA three-dimensional structure prediction

RNA

IF5

2012-02-23248

OAAI

Cruz, Jose Almeida; Blanchet, Marc-Frederick; Boniecki, Michal; Bujnicki, Janusz M.; Chen, Shi-Jie; Cao, Song; Das, Rhiju; Ding, Feng; Dokholyan, Nikolay V.; Flores, Samuel Coulbourn; Huang, Lili; Lavender, Christopher A.; Lisi, Veronique; Major, Francois; Mikolajczak, Katarzyna; Patel, Dinshaw J.; Philips, Anna; Puton, Tomasz; Santalucia, John; Sijenyi, Fredrick; Hermann, Thomas; Rother, Kristian; Rother, Magdalena; Serganov, Alexander; Skorupski, Marcin; Soltysinski, Tomasz; Sripakdeevong, Parin; Tuszynska, Irina; Weeks, Kevin M.; Waldsich, Christina; Wildauer, Michael; Leontis, Neocles B.; Westhof, Eric

Theoretical prediction and experimental verification of temperature distribution in FGM cylindrical plates subjected to thermal shock

INTERNATIONAL JOURNAL OF HEAT AND MASS TRANSFER

IF5.8

2007-10-0155

PREAI

Structural bioinformatics analysis of enzymes involved in the biosynthesis pathway of the hypermodified nucleoside ms2io6A37 in tRNA

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

IF2.8

2007-10-0145

PREAI

Theoretical model of prion propagation: A misfolded protein induces misfolding

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA