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P

Pedro Mendes

University of Connecticut

56H指数
200论文数
2.3W被引数
收录论文 52
发表时间
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From FAIR to CURE: guidelines for computational models of biological systems从FAIR到CURE：生物系统计算模型的指南
errnpj Systems Biology and Applications
IF3.5
err2026-03-27
err0
errOAAI
errHerbert M. Sauro; Eran Agmon; Michael L. Blinov; John H. Gennari; Joseph L. Hellerstein; Adel Heydarabadipour; Bartholomew E. Jardine; Elebeoba May; David P. Nickerson; Lucian P. Smith; Gary D. Bader; Frank T. Bergmann; Patrick M. Boyle; Andreas Dräger; James R. Faeder; Song Feng; Juliana Freire; Fabian Fröhlich; James A. Glazier; Thomas E. Gorochowski; Tomas Helikar; Henning Hermjakob; Stefan Hoops; Peter Hunter; Princess I. Imoukhuede; Sarah M. Keating; Matthias König; Reinhard Laubenbacher; Leslie M. Loew; Carlos F. Lopez; William W. Lytton; Rahuman S. Malik-Sheriff; Andrew McCulloch; Pedro Mendes; Lealem Mulugeta; Chris J. Myers; Jerry G. Myers Jr; Anna Niarakis; David D. van Niekerk; Brett G. Olivier; Alexander A. Patrie; Ellen M. Quardokus; Nicole Radde; Johann M. Rohwer; Sven Sahle; James C. Schaff; Falk Schreiber; T. J. Sego; Janis Shin; Jacky L. Snoep; Rajanikanth Vadigepalli; H. Steven Wiley; Dagmar Waltemath; Ion I. Moraru
err分享
err收藏
Mathematical modeling reveals ferritin as the strongest cellular driver of dietary iron transfer block in enterocytes数学建模揭示，铁蛋白是肠上皮细胞中膳食铁转移阻断最强的细胞驱动因子。
errplos biology
IF3.6
err2025-03-07
err0
errOAAI
errMasison, Joseph; Mendes, Pedro
err分享
err收藏
Understanding Lactobacillus paracasei and Streptococcus oralis Biofilm Interactions through Agent-Based Modeling (vol 6, e0087521, 2021)
errMSPHERE
IF3.1
err2023-04-20
err0
errOAAI
errArchambault, Linda; Koshy-Chenthittayil, Sherli; Thompson, Angela; Dongari-Bagtzoglou, Anna; Laubenbacher, Reinhard; Mendes, Pedro
err分享
err收藏
Corrected and Republished from: Understanding Lactobacillus paracasei and Streptococcus oralis Biofilm Interactions through Agent-Based Modeling
errMSPHERE
IF3.1
err2023-04-20
err2
errOAAI
errArchambault, Linda; Koshy-Chenthittayil, Sherli; Thompson, Angela; Dongari-Bagtzoglou, Anna; Laubenbacher, Reinhard; Mendes, Pedro
err分享
err收藏
BioSimulators: a central registry of simulation engines and services for recommending specific toolsBioSimulators: 用于推荐特定工具的模拟引擎和服务的中央注册表
errNUCLEIC ACIDS RESEARCH
IF13.1
err2022-05-07
err13
errOAAI
errShaikh, Bilal; Smith, Lucian P.; Vasilescu, Dan; Marupilla, Gnaneswara; Wilson, Michael; Agmon, Eran; Agnew, Henry; Andrews, Steven S.; Anwar, Azraf; Beber, Moritz E.; Bergmann, Frank T.; Brooks, David; Brusch, Lutz; Calzone, Laurence; Choi, Kiri; Cooper, Joshua; Detloff, John; Drawert, Brian; Dumontier, Michel; Ermentrout, G. Bard; Faeder, James R.; Freiburger, Andrew P.; Frohlich, Fabian; Funahashi, Akira; Garny, Alan; Gennari, John H.; Gleeson, Padraig; Goelzer, Anne; Haiman, Zachary; Hasenauer, Jan; Hellerstein, Joseph L.; Hermjakob, Henning; Hoops, Stefan; Ison, Jon C.; Jahn, Diego; Jakubowski, Henry, V; Jordan, Ryann; Kalas, Matus; Koenig, Matthias; Liebermeister, Wolfram; Sheriff, Rahuman S. Malik; Mandal, Synchon; McDougal, Robert; Medley, J. Kyle; Mendes, Pedro; Mueller, Robert; Myers, Chris J.; Naldi, Aurelien; Nguyen, Tung V. N.; Nickerson, David P.; Olivier, Brett G.; Patoliya, Drashti; Pauleve, Loic; Petzold, Linda R.; Priya, Ankita; Rampadarath, Anand K.; Rohwer, Johann M.; Saglam, Ali S.; Singh, Dilawar; Sinha, Ankur; Snoep, Jacky; Sorby, Hugh; Spangler, Ryan; Starruss, Joern; Thomas, Payton J.; van Niekerk, David; Weindl, Daniel; Zhang, Fengkai; Zhukova, Anna; Goldberg, Arthur P.; Schaff, James C.; Blinov, Michael L.; Sauro, Herbert M.; Moraru, Ion I.; Karr, Jonathan R.
err分享
err收藏
Understanding Lactobacillus paracasei and Streptococcus oralis Biofilm Interactions through Agent-Based Modeling
errMSPHERE
IF3.1
err2021-12-22
err5
errOAAI
errArchambault, Linda; Koshy-Chenthittayil, Sherli; Thompson, Angela; Dongari-Bagtzoglou, Anna; Laubenbacher, Reinhard; Mendes, Pedro
err分享
err收藏
Agent Based Models of Polymicrobial Biofilms and the Microbiome-A Review
errMICROORGANISMS
IF4.2
err2021-02-17
err15
errOAAI
errKoshy-Chenthittayil, Sherli; Archambault, Linda; Senthilkumar, Dhananjai; Laubenbacher, Reinhard; Mendes, Pedro; Dongari-Bagtzoglou, Anna
err分享
err收藏
Computational strategies to combat COVID-19: useful tools to accelerate SARS-CoV-2 and coronavirus research
errBRIEFINGS IN BIOINFORMATICS
IF7.7
err2020-11-04
err84
errOAAI
errHufsky, Franziska; Lamkiewicz, Kevin; Almeida, Alexandre; Aouacheria, Abdel; Arighi, Cecilia; Bateman, Alex; Baumbach, Jan; Beerenwinkel, Niko; Brandt, Christian; Cacciabue, Marco; Chuguransky, Sara; Drechsel, Oliver; Finn, Robert D.; Fritz, Adrian; Fuchs, Stephan; Hattab, Georges; Hauschild, Anne-Christin; Heider, Dominik; Hoffmann, Marie; Hoelzer, Martin; Hoops, Stefan; Kaderali, Lars; Kalvari, Ioanna; von Kleist, Max; Kmiecinski, Reno; Kuehnert, Denise; Lasso, Gorka; Libin, Pieter; List, Markus; Loechel, Hannah F.; Martin, Maria J.; Martin, Roman; Matschinske, Julian; McHardy, Alice C.; Mendes, Pedro; Mistry, Jaina; Navratil, Vincent; Nawrocki, Eric P.; O'Toole, Aine Niamh; Ontiveros-Palacios, Nancy; Petrov, Anton, I; Rangel-Pineros, Guillermo; Redaschi, Nicole; Reimering, Susanne; Reinert, Knut; Reyes, Alejandro; Richardson, Lorna; Robertson, David L.; Sadegh, Sepideh; Singer, Joshua B.; Theys, Kristof; Upton, Chris; Welzel, Marius; Williams, Lowri; Marz, Manja
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ModelBricks-modules for reproducible modeling improving model annotation and provenance
errNPJ SYSTEMS BIOLOGY AND APPLICATIONS
IF3.5
err2019-10-08
err10
errOAAI
errCowan, Ann E.; Mendes, Pedro; Blinov, Michael L.
err分享
err收藏
Multisite rate control analysis identifies ribosomal scanning as the sole high-capacity/low-flux-control step in mRNA translation
errFEBS JOURNAL
IF4.2
err2019-10-04
err0
errOAAI
errFirczuk, Helena; Teahan, James; Mendes, Pedro; McCarthy, John E. G.
err分享
err收藏
COPASI and its applications in biotechnology
errJOURNAL OF BIOTECHNOLOGY
IF3.9
err2017-11-01
err64
errOAAI
errBergmann, Frank T.; Hoops, Stefan; Klahn, Brian; Kummer, Ursula; Mendes, Pedro; Pahle, Juergen; Sahle, Sven
err分享
err收藏
Translation initiation events on structured eukaryotic mRNAs generate gene expression noise
errNUCLEIC ACIDS RESEARCH
IF13.1
err2017-05-17
err19
errOAAI
errDacheux, Estelle; Malys, Naglis; Meng, Xiang; Ramachandran, Vinoy; Mendes, Pedro; McCarthy, John E. G.
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err收藏
Minimum-noise production of translation factor eIF4G maps to a mechanistically determined optimal rate control window for protein synthesis
errNUCLEIC ACIDS RESEARCH
IF13.1
err2016-12-07
err7
errOAAI
errMeng, Xiang; Firczuk, Helena; Pietroni, Paola; Westbrook, Richard; Dacheux, Estelle; Mendes, Pedro; McCarthy, John E. G.
err分享
err收藏
Recon 2.2: from reconstruction to model of human metabolism
errMETABOLOMICS
IF3.3
err2016-06-07
err229
errOAAI
errSwainston, Neil; Smallbone, Kieran; Hefzi, Hooman; Dobson, Paul D.; Brewer, Judy; Hanscho, Michael; Zielinski, Daniel C.; Ang, Kok Siong; Gardiner, Natalie J.; Gutierrez, Jahir M.; Kyriakopoulos, Sarantos; Lakshmanan, Meiyappan; Li, Shangzhong; Liu, Joanne K.; Martinez, Veronica S.; Orellana, Camila A.; Quek, Lake-Ee; Thomas, Alex; Zanghellini, Juergen; Borth, Nicole; Lee, Dong-Yup; Nielsen, Lars K.; Kell, Douglas B.; Lewis, Nathan E.; Mendes, Pedro
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err收藏
Response to 'The Need for Speed', by Matsson et al.
errTRENDS IN PHARMACOLOGICAL SCIENCES
IF19.9
err2016-04-01
err1
errOAAI
errMendes, Pedro; Oliver, Stephen G.; Kell, Douglas B.
err分享
err收藏
libChEBI: an API for accessing the ChEBI database
errJOURNAL OF CHEMINFORMATICS
IF5.7
err2016-03-01
err17
errOAAI
errSwainston, Neil; Hastings, Janna; Dekker, Adriano; Muthukrishnan, Venkatesh; May, John; Steinbeck, Christoph; Mendes, Pedro
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err收藏
Fitting Transporter Activities to Cellular Drug Concentrations and Fluxes: Why the Bumblebee Can Fly
errTRENDS IN PHARMACOLOGICAL SCIENCES
IF19.9
err2015-11-01
err20
errOAAI
errMendes, Pedro; Oliver, Stephen G.; Kell, Douglas B.
err分享
err收藏
ChEBI in 2016: Improved services and an expanding collection of metabolitesChEBI 2016年: 改善服务和扩大代谢物的收集
errNUCLEIC ACIDS RESEARCH
IF13.1
err2015-10-13
err663
errOAAI
errHastings, Janna; Owen, Gareth; Dekker, Adriano; Ennis, Marcus; Kale, Namrata; Muthukrishnan, Venkatesh; Turner, Steve; Swainston, Neil; Mendes, Pedro; Steinbeck, Christoph
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err收藏
Silence on the relevant literature and errors in implementation对相关文献的沉默和实施中的错误
errNATURE BIOTECHNOLOGY
IF41.7
err2015-04-07
err11
PREAI
errBastiaens, Philippe; Birtwistle, Marc R.; Bluethgen, Nils; Bruggeman, Frank J.; Cho, Kwang-Hyun; Cosentino, Carlo; de la Fuente, Alberto; Hoek, Jan B.; Kiyatkin, Anatoly; Klamt, Steffen; Kolch, Walter; Legewie, Stefan; Mendes, Pedro; Naka, Takashi; Santra, Tapesh; Sontag, Eduardo; Westerhoff, Hans V.; Kholodenko, Boris N.
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err收藏
Zinc depletion regulates the processing and secretion of IL-1β
errCELL DEATH & DISEASE
IF9.6
err2014-01-30
err89
errOAAI
errSummersgill, H.; England, H.; Lopez-Castejon, G.; Lawrence, C. B.; Luheshi, N. M.; Pahle, J.; Mendes, P.; Brough, D.
err分享
err收藏

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