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Neil Swainston

University of Manchester

39H指数
122论文数
8.2K被引数
收录论文 33
发表时间
EnzymeML: seamless data flow and modeling of enzymatic data
err2023-02-09
err18
PREAI
errLauterbach, Simone; Dienhart, Hannah; Range, Jan; Malzacher, Stephan; Spoering, Jan-Dirk; Rother, Doerte; Pinto, Maria Filipa; Martins, Pedro; Lagerman, Colton E.; Bommarius, Andreas S.; Host, Amalie Vang; Woodley, John M.; Ngubane, Sandile; Kudanga, Tukayi; Bergmann, Frank T.; Rohwer, Johann M.; Iglezakis, Dorothea; Weidemann, Andreas; Wittig, Ulrike; Kettner, Carsten; Swainston, Neil; Schnell, Santiago; Pleiss, Juergen
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The automated Galaxy-SynBioCAD pipeline for synthetic biology design and engineering
err2022-08-29
err16
errOAAI
errHerisson, Joan; Duigou, Thomas; du Lac, Melchior; Bazi-Kabbaj, Kenza; Azad, Mahnaz Sabeti; Buldum, Gizem; Telle, Olivier; El Moubayed, Yorgo; Carbonell, Pablo; Swainston, Neil; Zulkower, Valentin; Kushwaha, Manish; Baldwin, Geoff S.; Faulon, Jean-Loup
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EnzymeML-a data exchange format for biocatalysis and enzymology
err2021-12-26
err18
errOAAI
errRange, Jan; Halupczok, Colin; Lohmann, Jens; Swainston, Neil; Kettner, Carsten; Bergmann, Frank T.; Weidemann, Andreas; Wittig, Ulrike; Schnell, Santiago; Pleiss, Jurgen
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SBML Level 3: an extensible format for the exchange and reuse of biological models
err2020-08-26
err170
errOAAI
errKeating, Sarah M.; Waltemath, Dagmar; Koenig, Matthias; Zhang, Fengkai; Draeger, Andreas; Chaouiya, Claudine; Bergmann, Frank T.; Finney, Andrew; Gillespie, Colin S.; Helikar, Tomas; Hoops, Stefan; Malik-Sheriff, Rahuman S.; Moodie, Stuart L.; Moraru, Ion I.; Myers, Chris J.; Naldi, Aurelien; Olivier, Brett G.; Sahle, Sven; Schaff, James C.; Smith, Lucian P.; Swat, Maciej J.; Thieffry, Denis; Watanabe, Leandro; Wilkinson, Darren J.; Blinov, Michael L.; Begley, Kimberly; Faeder, James R.; Gomez, Harold F.; Hamm, Thomas M.; Inagaki, Yuichiro; Liebermeister, Wolfram; Lister, Allyson L.; Lucio, Daniel; Mjolsness, Eric; Proctor, Carole J.; Raman, Karthik; Rodriguez, Nicolas; Shaffer, Clifford A.; Shapiro, Bruce E.; Stelling, Joerg; Swainston, Neil; Tanimura, Naoki; Wagner, John; Meier-Schellersheim, Martin; Sauro, Herbert M.; Palsson, Bernhard; Bolouri, Hamid; Kitano, Hiroaki; Funahashi, Akira; Hermjakob, Henning; Doyle, John C.; Hucka, Michael
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VAE-Sim: A Novel Molecular Similarity Measure Based on a Variational AutoencoderVAE-Sim:一种基于变分自编码器的新分子相似性度量
err2020-07-29
err29
errOAAI
errSamanta, Soumitra; O'Hagan, Steve; Swainston, Neil; Roberts, Timothy J.; Kell, Douglas B.
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Rapid prototyping of microbial production strains for the biomanufacture of potential materials monomers用于潜在材料单体生物制造的微生物生产菌株的快速原型
err2020-07-01
err47
errOAAI
errRobinson, Christopher J.; Carbonell, Pablo; Jervis, Adrian J.; Yan, Cunyu; Hollywood, Katherine A.; Dunstan, Mark S.; Currin, Andrew; Swainston, Neil; Spiess, Reynard; Taylor, Sandra; Mulherin, Paul; Parker, Steven; Rowe, William; Matthews, Nicholas E.; Malone, Kirk J.; Le Feuvre, Rosalind; Shapira, Philip; Barran, Perdita; Turner, Nicholas J.; Micklefield, Jason; Breitling, Rainer; Takano, Eriko; Scrutton, Nigel S.
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An automated pipeline for the screening of diverse monoterpene synthase libraries
err2019-08-15
err27
errOAAI
errLeferink, Nicole G. H.; Dunstan, Mark S.; Hollywood, Katherine A.; Swainston, Neil; Currin, Andrew; Jervis, Adrian J.; Takano, Eriko; Scrutton, Nigel S.
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GeneORator: An Effective Strategy for Navigating Protein Sequence Space More Efficiently through Boolean OR-Type DNA Libraries
err2019-05-27
err10
errOAAI
errCurrin, Andrew; Kwok, Jane; Sadler, Joanna C.; Bell, Elizabeth L.; Swainston, Neil; Ababi, Maria; Day, Philip; Turner, Nicholas J.; Kell, Douglas B.
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Machine Learning of Designed Translational Control Allows Predictive Pathway Optimization in Escherichia coli设计的翻译控制的机器学习允许大肠杆菌中的预测途径优化
err2018-12-18
err87
errOAAI
errJervis, Adrian J.; Carbonell, Pablo; Vinaixa, Maria; Dunstan, Mark S.; Hollywood, Katherine A.; Robinson, Christopher J.; Rattray, Nicholas J. W.; Yan, Cunyu; Swainston, Neil; Currin, Andrew; Sung, Rehana; Toogood, Helen; Taylor, Sandra; Faulon, Jean-Loup; Breitling, Rainer; Takano, Eriko; Scrutton, Nigel S.
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Rationalizing Context-Dependent Performance of Dynamic RNA Regulatory Devices
err2018-06-21
err8
PREAI
errKent, Ross; Halliwell, Samantha; Young, Kate; Swainston, Neil; Dixon, Neil
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An automated Design-Build-Test-Learn pipeline for enhanced microbial production of fine chemicals
err2018-06-08
err194
errOAAI
errCarbonell, Pablo; Jervis, Adrian J.; Robinson, Christopher J.; Yan, Cunyu; Dunstan, Mark; Swainston, Neil; Vinaixa, Maria; Hollywood, Katherine A.; Currin, Andrew; Rattray, Nicholas J. W.; Taylor, Sandra; Spiess, Reynard; Sung, Rehana; Williams, Alan R.; Fellows, Donal; Stanford, Natalie J.; Mulherin, Paul; Le Feuvre, Rosalind; Barran, Perdita; Goodacre, Royston; Turner, Nicholas J.; Goble, Carole; Chen, George Guoqiang; Kell, Douglas B.; Micklefield, Jason; Breitling, Rainer; Takano, Eriko; Faulon, Jean-Loup; Scrutton, Nigel S.
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STRENDA DB: enabling the validation and sharing of enzyme kinetics data
err2018-03-23
err42
errOAAI
errSwainston, Neil; Baici, Antonio; Bakker, Barbara M.; Cornish-Bowden, Athel; Fitzpatrick, Paul F.; Halling, Peter; Leyh, Thomas S.; O'Donovan, Claire; Raushel, Frank M.; Reschel, Udo; Rohwer, Johann M.; Schnell, Santiago; Schomburg, Dietmar; Tipton, Keith F.; Tsai, Ming-Daw; Westerhoff, Hans V.; Wittig, Ulrike; Wohlgemuth, Roland; Kettner, Carsten
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Engineering the Missing Link in Biosynthetic (-)-Menthol Production: Bacterial Isopulegone Isomerase
err2018-01-24
err27
errOAAI
errCurrin, Andrew; Dunstan, Mark S.; Johannissen, Linus O.; Hollywood, Katherine A.; Vinaixa, Maria; Jervis, Adrian J.; Swainston, Neil; Rattray, Nicholas J. W.; Gardiner, John M.; Kell, Douglas B.; Takano, Eriko; Toogood, Helen S.; Scrutton, Nigel S.
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CodonGenie: optimised ambiguous codon design tools
err2017-07-10
err9
errOAAI
errSwainston, Neil; Currin, Andrew; Green, Lucy; Breitling, Rainer; Day, Philip J.; Kell, Douglas B.
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SYNBIOCHEM - a SynBio foundry for the biosynthesis and sustainable production of fine and speciality chemicalsSYNBIOCHEM-用于生物合成和可持续生产精细和特种化学品的SynBio铸造厂
err2016-06-09
err8
errOAAI
errCarbonell, Pablo; Currin, Andrew; Dunstan, Mark; Fellows, Donal; Jervis, Adrian; Rattray, Nicholas J. W.; Robinson, Christopher J.; Swainston, Neil; Vinaixa, Maria; Williams, Alan; Yan, Cunyu; Barran, Perdita; Breitling, Rainer; Chen, George Guo-Qiang; Faulon, Jean-Loup; Goble, Carole; Goodacre, Royston; Kell, Douglas B.; Le Feuvre, Rosalind; Micklefield, Jason; Scrutton, Nigel S.; Shapira, Philip; Takano, Eriko; Turner, Nicholas J.
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Recon 2.2: from reconstruction to model of human metabolism
err2016-06-07
err229
errOAAI
errSwainston, Neil; Smallbone, Kieran; Hefzi, Hooman; Dobson, Paul D.; Brewer, Judy; Hanscho, Michael; Zielinski, Daniel C.; Ang, Kok Siong; Gardiner, Natalie J.; Gutierrez, Jahir M.; Kyriakopoulos, Sarantos; Lakshmanan, Meiyappan; Li, Shangzhong; Liu, Joanne K.; Martinez, Veronica S.; Orellana, Camila A.; Quek, Lake-Ee; Thomas, Alex; Zanghellini, Juergen; Borth, Nicole; Lee, Dong-Yup; Nielsen, Lars K.; Kell, Douglas B.; Lewis, Nathan E.; Mendes, Pedro
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libChEBI: an API for accessing the ChEBI database
err2016-03-01
err17
errOAAI
errSwainston, Neil; Hastings, Janna; Dekker, Adriano; Muthukrishnan, Venkatesh; May, John; Steinbeck, Christoph; Mendes, Pedro
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Bioinformatics for the synthetic biology of natural products: integrating across the Design-Build-Test cycle
err2016-01-01
err49
errOAAI
errCarbonell, Pablo; Currin, Andrew; Jervis, Adrian J.; Rattray, Nicholas J. W.; Swainston, Neil; Yan, Cunyu; Takano, Eriko; Breitling, Rainer
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