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Extended haplotype-phasing of long-read de novo genome assemblies using Hi-C 使用hi-c扩展长读从头基因组组装的单倍型定相 Kronenberg, Zev N.; Rhie, Arang; Koren, Sergey; Concepcion, Gregory T.; Peluso, Paul; Munson, Katherine M.; Porubsky, David; Kuhn, Kristen; Mueller, Kathryn A.; Low, Wai Yee; Hiendleder, Stefan; Fedrigo, Olivier; Liachko, Ivan; Hall, Richard J.; Phillippy, Adam M.; Eichler, Evan E.; Williams, John L.; Smith, Timothy P. L.; Jarvis, Erich D.; Sullivan, Shawn T.; Kingan, Sarah B. 分享 收藏
A draft phased assembly of the diploid Cascade hop (Humulus lupulus) genome Padgitt-Cobb, Lillian K.; Kingan, Sarah B.; Wells, Jackson; Elser, Justin; Kronmiller, Brent; Moore, Daniel; Concepcion, Gregory; Peluso, Paul; Rank, David; Jaiswal, Pankaj; Henning, John; Hendrix, David A. 分享 收藏
Chromosome-scale, haplotype-resolved assembly of human genomes 人类基因组的染色体规模，单倍型分辨的组装 Garg, Shilpa; Fungtammasan, Arkarachai; Carroll, Andrew; Chou, Mike; Schmitt, Anthony; Zhou, Xiang; Mac, Stephen; Peluso, Paul; Hatas, Emily; Ghurye, Jay; Maguire, Jared; Mahmoud, Medhat; Cheng, Haoyu; Heller, David; Zook, Justin M.; Moemke, Tobias; Marschall, Tobias; Sedlazeck, Fritz J.; Aach, John; Chin, Chen-Shan; Church, George M.; Li, Heng 分享 收藏
Accurate circular consensus long-read sequencing improves variant detection and assembly of a human genome 精确的圆形一致性长读测序可改善人类基因组的变异检测和组装 Wenger, Aaron M.; Peluso, Paul; Rowell, William J.; Chang, Pi-Chuan; Hall, Richard J.; Concepcion, Gregory T.; Ebler, Jana; Fungtammasan, Arkarachai; Kolesnikov, Alexey; Olson, Nathan D.; Topfer, Armin; Alonge, Michael; Mahmoud, Medhat; Qian, Yufeng; Chin, Chen-Shan; Phillippy, Adam M.; Schate, Michael C.; Myers, Gene; DePristo, Mark A.; Ruan, Jue; Marschall, Tobias; Sedlazeck, Fritz J.; Zook, Justin M.; Li, Heng; Koren, Sergey; Carroll, Andrew; Rank, David R.; Hunkapiller, Michael W. 分享 收藏
Genome-based classification of micromonosporae with a focus on their biotechnological and ecological potential Carro, Lorena; Nouioui, Imen; Sangal, Vartul; Meier-Kolthoff, Jan P.; Trujillo, Martha E.; Montero-Calasanz, Maria del Carmen; Sahin, Nevzat; Smith, Darren Lee; Kim, Kristi E.; Peluso, Paul; Deshpande, Shweta; Woyke, Tanja; Shapiro, Nicole; Kyrpides, Nikos C.; Klenk, Hans-Peter; Goeker, Markus; Goodfellow, Michael 分享 收藏
Discovery and genotyping of structural variation from long-read haploid genome sequence data (vol 27, pg 677, 2017) Huddleston, John; Chaisson, Mark J. P.; Steinberg, Karyn Meltz; Warren, Wes; Hoekzema, Kendra; Gordon, David; Graves-Lindsay, Tina A.; Munson, Katherine M.; Kronenberg, Zev N.; Vives, Laura; Peluso, Paul; Boitano, Matthew; Chin, Chen-Shin; Korlach, Jonas; Wilson, Richard K.; Eichler, Evan E. 分享 收藏
The Kalanchoe genome provides insights into convergent evolution and building blocks of crassulacean acid metabolism Yang, Xiaohan; Hu, Rongbin; Yin, Hengfu; Jenkins, Jerry; Shu, Shengqiang; Tang, Haibao; Liu, Degao; Weighill, Deborah A.; Yim, Won Cheol; Ha, Jungmin; Heyduk, Karolina; Goodstein, David M.; Guo, Hao-Bo; Moseley, Robert C.; Fitzek, Elisabeth; Jawdy, Sara; Zhang, Zhihao; Xie, Meng; Hartwell, James; Grimwood, Jane; Abraham, Paul E.; Mewalal, Ritesh; Beltran, Juan D.; Boxall, Susanna F.; Dever, Louisa V.; Palla, Kaitlin J.; Albion, Rebecca; Garcia, Travis; Mayer, Jesse A.; Lim, Sung Don; Wai, Ching Man; Peluso, Paul; Van Buren, Robert; De Paoli, Henrique Cestari; Borland, Anne M.; Guo, Hong; Chen, Jin-Gui; Muchero, Wellington; Yin, Yanbin; Jacobson, Daniel A.; Tschaplinski, Timothy J.; Hettich, Robert L.; Ming, Ray; Winter, Klaus; Leebens-Mack, James H.; Smith, J. Andrew C.; Cushman, John C.; Schmutz, Jeremy; Tuskan, Gerald A. 分享 收藏
Evaluation of GRCh38 and de novo haploid genome assemblies demonstrates the enduring quality of the reference assembly GRCh38和从头单倍体基因组装配的评估证明了参考装配的持久质量 Schneider, Valerie A.; Graves-Lindsay, Tina; Howe, Kerstin; Bouk, Nathan; Chen, Hsiu-Chuan; Kitts, Paul A.; Murphy, Terence D.; Pruitt, Kim D.; Thibaud-Nissen, Francoise; Albracht, Derek; Fulton, Robert S.; Kremitzki, Milinn; Magrini, Vincent; Markovic, Chris; McGrath, Sean; Steinberg, Karyn Meltz; Auger, Kate; Chow, William; Collins, Joanna; Harden, Glenn; Hubbard, Timothy; Pelan, Sarah; Simpson, Jared T.; Threadgold, Glen; Torrance, James; Wood, Jonathan M.; Clarke, Laura; Koren, Sergey; Boitano, Matthew; Peluso, Paul; Li, Heng; Chin, Chen-Shan; Phillippy, Adam M.; Durbin, Richard; Wilson, Richard K.; Flicek, Paul; Eichler, Evan E.; Church, Deanna M. 分享 收藏
An improved genome assembly uncovers prolific tandem repeats in Atlantic cod Torresen, Ole K.; Star, Bastiaan; Jentoft, Sissel; Reinar, William B.; Grove, Harald; Miller, Jason R.; Walenz, Brian P.; Knight, James; Ekholm, Jenny M.; Peluso, Paul; Edvardsen, Rolf B.; Tooming-Klunderud, Ave; Skage, Morten; Lien, Sigbjorn; Jakobsen, Kjetill S.; Nederbragt, Alexander J. 分享 收藏
Discovery and genotyping of structural variation from long-read haploid genome sequence data Huddleston, John; Chaisson, Mark J. P.; Steinberg, Karyn Meltz; Warren, Wes; Hoekzema, Kendra; Gordon, David; Graves-Lindsay, Tina A.; Munson, Katherine M.; Kronenberg, Zev N.; Vives, Laura; Peluso, Paul; Boitano, Matthew; Chin, Chen-Shin; Korlach, Jonas; Wilson, Richard K.; Eichler, Evan E. 分享 收藏
Phased diploid genome assembly with single-molecule real-time sequencing Chin, Chen-Shan; Peluso, Paul; Sedlazeck, Fritz J.; Nattestad, Maria; Concepcion, Gregory T.; Clum, Alicia; Dunn, Christopher; O'Malley, Ronan; Figueroa-Balderas, Rosa; Morales-Cruz, Abraham; Cramer, Grant R.; Delledonne, Massimo; Luo, Chongyuan; Ecker, Joseph R.; Cantu, Dario; Rank, David R.; Schatz, Michael C. 分享 收藏
Comparative analysis of tandem repeats from hundreds of species reveals unique insights into centromere evolution Melters, Daniel P.; Bradnam, Keith R.; Young, Hugh A.; Telis, Natalie; May, Michael R.; Ruby, J. Graham; Sebra, Robert; Peluso, Paul; Eid, John; Rank, David; Garcia, Jose Fernando; DeRisi, Joseph L.; Smith, Timothy; Tobias, Christian; Ross-Ibarra, Jeffrey; Korf, Ian; Chan, Simon W. L. 分享 收藏
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Sequencing the unsequenceable: Expanded CGG-repeat alleles of the fragile X gene Loomis, Erick W.; Eid, John S.; Peluso, Paul; Yin, Jun; Hickey, Luke; Rank, David; McCalmon, Sarah; Hagerman, Randi J.; Tassone, Flora; Hagerman, Paul J. 分享 收藏
A hybrid approach for the automated finishing of bacterial genomes Bashir, Ali; Klammer, Aaron A.; Robins, William P.; Chin, Chen-Shan; Webster, Dale; Paxinos, Ellen; Hsu, David; Ashby, Meredith; Wang, Susana; Peluso, Paul; Sebra, Robert; Sorenson, Jon; Bullard, James; Yen, Jackie; Valdovino, Marie; Mollova, Emilia; Luong, Khai; Lin, Steven; Lamay, Brianna; Joshi, Amruta; Rowe, Lori; Frace, Michael; Tarr, Cheryl L.; Turnsek, Maryann; Davis, Brigid M.; Kasarskis, Andrew; Mekalanos, John J.; Waldor, Matthew K.; Schadt, Eric E. 分享 收藏
Origins of the E. coli Strain Causing an Outbreak of Hemolytic-Uremic Syndrome in Germany Rasko, David A.; Webster, Dale R.; Sahl, Jason W.; Bashir, Ali; Boisen, Nadia; Scheutz, Flemming; Paxinos, Ellen E.; Sebra, Robert; Chin, Chen-Shan; Iliopoulos, Dimitris; Klammer, Aaron; Peluso, Paul; Lee, Lawrence; Kislyuk, Andrey O.; Bullard, James; Kasarskis, Andrew; Wang, Susanna; Eid, John; Rank, David; Redman, Julia C.; Steyert, Susan R.; Frimodt-Moller, Jakob; Struve, Carsten; Petersen, Andreas M.; Krogfelt, Karen A.; Nataro, James P.; Schadt, Eric E.; Waldor, Matthew K. 分享 收藏
The Origin of the Haitian Cholera Outbreak Strain. Chin, Chen-Shan; Sorenson, Jon; Harris, Jason B.; Robins, William P.; Charles, Richelle C.; Jean-Charles, Roger R.; Bullard, James; Webster, Dale R.; Kasarskis, Andrew; Peluso, Paul; Paxinos, Ellen E.; Yamaichi, Yoshiharu; Calderwood, Stephen B.; Mekalanos, John J.; Schadt, Eric E.; Waldor, Matthew K. 分享 收藏
Parallel confocal detection of single molecules in real time Lundquist, Paul M.; Zhong, Cheng F.; Zhao, Peiqian; Tomaney, Austin B.; Peluso, Paul S.; Dixon, John; Bettman, Brad; Lacroix, Yves; Kwo, Deborah P.; McCullough, Etienne; Maxham, Mark; Hester, Kevin; McNitt, Paul; Grey, Donald M.; Henriquez, Carlos; Foquet, Mathieu; Turner, Stephen W.; Zaccarin, Denis 分享 收藏
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