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Peter K. Koo

Cold Spring Harbor Laboratory

23H指数
108论文数
1.8K被引数
收录论文 27
发表时间
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Toward generalizable and interpretable AI in regulatory genomics迈向可泛化和可解释的监管基因组学人工智能
errNature Genetics
IF29
err2026-07-27
err0
PREAI
errMasayuki Nagai; Alan E. Murphy; Kaeli Rizzo; Peter K. Koo
err分享
err收藏
Predicting non-coding variant effects with AlphaGenome使用AlphaGenome预测非编码变异的影响
errCell Research
IF25.9
err2026-04-08
err0
PREAI
errAlan E. Murphy; Masayuki Nagai; Peter K. Koo
err分享
err收藏
Machine Learning for Protein Science and Engineering机器学习在蛋白质科学与工程中的应用
errCold Spring Harbor Perspectives in Biology
IF8.4
err2026-01-01
err1
PREAI
errKoo, Peter K.; Dallago, Christian; Nambiar, Ananthan; Yang, Kevin K.
err分享
err收藏
Decoding the regulatory genome with large-scale deep learning利用大规模深度学习解码调控基因组
errNature Reviews Genetics
IF52
err2025-11-03
err0
PREAI
errPeter K. Koo
err分享
err收藏
Massive experimental quantification allows interpretable deep learning of protein aggregation大规模实验量化允许可解释的蛋白质聚集深度学习
errSCIENCE ADVANCES
IF12.5
err2025-05-02
err0
errOAAI
errThompson, Mike; Martin, Mariano; Olmo, Trinidad Sanmartin; Rajesh, Chandana; Koo, Peter K.
err分享
err收藏
Probabilistic and machine-learning methods for predicting local rates of transcription elongation from nascent RNA sequencing data基于新生RNA测序数据预测转录延伸局部速率的概率统计与机器学习方法
errNUCLEIC ACIDS RESEARCH
IF13.1
err2025-02-18
err0
errOAAI
errLiu, Lingjie; Zhao, Yixin; Hassett, Rebecca; Toneyan, Shushan; Koo, Peter K.
err分享
err收藏
Analysis of single-cell CRISPR perturbations indicates that enhancers predominantly act multiplicatively
errCELL GENOMICS
IF9
err2024-11-01
err0
errOAAI
errZhou, Jessica L.; Guruvayurappan, Karthik; Toneyan, Shushan; Chen, Hsiuyi V.; Chen, Aaron R.; Koo, Peter; Mcvicker, Graham
err分享
err收藏
Interpreting cis-regulatory interactions from large-scale deep neural networks
errNATURE GENETICS
IF31.8
err2024-09-16
err2
PREAI
errToneyan, Shushan; Koo, Peter K.
err分享
err收藏
Interpreting cis-regulatory mechanisms from genomic deep neural networks using surrogate models
errNATURE MACHINE INTELLIGENCE
IF23.9
err2024-06-21
err5
PREAI
errSeitz, Evan E.; Mccandlish, David M.; Kinney, Justin B.; Koo, Peter K.
err分享
err收藏
ChampKit: A framework for rapid evaluation of deep neural networks for patch-based histopathology classification
errCOMPUTER METHODS AND PROGRAMS IN BIOMEDICINE
IF4.8
err2023-09-01
err4
errOAAI
errKaczmarzyk, Jakub R.; Gupta, Rajarsi; Kurc, Tahsin M.; Abousamra, Shahira; Saltz, Joel H.; Koo, Peter K.
err分享
err收藏
Correcting gradient-based interpretations of deep neural networks for genomics修正用于基因组学的深度神经网络的基于梯度的解释
errGENOME BIOLOGY
IF9.4
err2023-05-09
err6
errOAAI
errMajdandzic, Antonio; Rajesh, Chandana; Koo, Peter K.
err分享
err收藏
EvoAug: improving generalization and interpretability of genomic deep neural networks with evolution-inspired data augmentations
errGENOME BIOLOGY
IF9.4
err2023-05-05
err9
errOAAI
errLee, Nicholas Keone; Tang, Ziqi; Toneyan, Shushan; Koo, Peter K.
err分享
err收藏
ETV6 dependency in Ewing sarcoma by antagonism of EWS-FLI1-mediated enhancer activation通过EWS-FLI1-mediated增强子激活的拮抗作用，ETV6对尤文肉瘤的依赖性
errNATURE CELL BIOLOGY
IF19.1
err2023-01-19
err13
errOAAI
errGao, Yuan; He, Xue-Yan; Wu, Xiaoli S.; Huang, Yu-Han; Toneyan, Shushan; Ha, Taehoon; Ipsaro, Jonathan J.; Koo, Peter K.; Joshua-Tor, Leemor; Bailey, Kelly M.; Egeblad, Mikala; Vakoc, Christopher R.
err分享
err收藏
Learning single-cell chromatin accessibility profiles using meta-analytic marker genes
errBRIEFINGS IN BIOINFORMATICS
IF7.7
err2022-12-22
err1
errOAAI
errKawaguchi, Risa Karakida; Tang, Ziqi; Fischer, Stephan; Rajesh, Chandana; Tripathy, Rohit; Koo, Peter K.; Gillis, Jesse
err分享
err收藏
Evaluating deep learning for predicting epigenomic profiles
errNATURE MACHINE INTELLIGENCE
IF23.9
err2022-12-05
err23
errOAAI
errToneyan, Shushan; Tang, Ziqi; Koo, Peter K.
err分享
err收藏
Improving representations of genomic sequence motifs in convolutional networks with exponential activations
errNATURE MACHINE INTELLIGENCE
IF23.9
err2021-02-08
err45
errOAAI
errKoo, Peter K.; Ploenzke, Matt
err分享
err收藏
ZBED2 is an antagonist of interferon regulatory factor 1 and modifies cell identity in pancreatic cancerZBED2是干扰素调节因子1的拮抗剂，并改变胰腺癌的细胞身份
errPROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
IF9.1
err2020-05-08
err38
errOAAI
errSomerville, Tim D. D.; Xu, Yali; Wu, Xiaoli S.; Maia-Silva, Diogo; Hur, Stella K.; de Almeida, Larissa M. N.; Preall, Jonathan B.; Koo, Peter K.; Vakoc, Christopher R.
err分享
err收藏
Deep learning for inferring transcription factor binding sites
errCURRENT OPINION IN SYSTEMS BIOLOGY
IF2.2
err2020-02-01
err50
errOAAI
errKoo, Peter K.; Ploenzke, Matt
err分享
err收藏
WASP family proteins regulate the mobility of the B cell receptor during signaling activation
errNATURE COMMUNICATIONS
IF15.7
err2020-01-23
err35
errOAAI
errRey-Suarez, Ivan; Wheatley, Brittany A.; Koo, Peter; Bhanja, Anshuman; Shu, Zhou; Mochrie, Simon; Song, Wenxia; Shroff, Hari; Upadhyaya, Arpita
err分享
err收藏
A demonstration of unsupervised machine learning in species delimitation
errMOLECULAR PHYLOGENETICS AND EVOLUTION
IF3.6
err2019-10-01
err80
errOAAI
errDerkarabetian, Shahan; Castillo, Stephanie; Koo, Peter K.; Ovchinnikov, Sergey; Hedin, Marshal
err分享
err收藏

研究方向

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合作学者
合作期刊
T
Thomas P. Russell
H 指数: 151 · 论文数: 1.5K
D
David G. Schatz
H 指数: 71 · 论文数: 328
C
Christopher R. Vakoc
H 指数: 67 · 论文数: 375
J
Joel Saltz
H 指数: 63 · 论文数: 640
S
S. G. J. Mochrie
H 指数: 55 · 论文数: 258
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