未登录 The PanOryza pangene catalog of Asian cultivated rice Contreras-Moreira, Bruno; Sharma, Eshan; Saraf, Shradha; Naamati, Guy; Gupta, Parul; Elser, Justin; Chebotarov, Dmytro; Chougule, Kapeel; Lu, Zhenyuan; Wei, Sharon; Olson, Andrew; Tsang, Ian; Lodha, Disha; Zhou, Yong; Yu, Zhichao; Zhao, Wen; Zhang, Jianwei; Amberkar, Sandeep; Sue-Ob, Kawinnat; Sun, Zhi; Martin, Maria; McNally, Kenneth L.; Ware, Doreen; Deutsch, Eric W.; Copetti, Dario; Wing, Rod A.; Jaiswal, Pankaj; Dyer, Sarah; Jones, Andrew R. 分享 收藏
SorghumBase: a knowledgebase for sorghum genomics, phenomics, and stakeholder engagement Gladman, Nicholas; Olson, Andrew; Kumari, Sunita; Wei, Sharon; Chougule, Kapeel; Lu, Zhenyuan; Tello-Ruiz, Marcela K.; Van Buren, Peter; Kumar, Vivek; Zhang, Lifang; Olson, Audra; Kim, Catherine; Braynen, Janeen; Hayes, Chad; Xin, Zhanguo; Klein, Robert; Rooney, William; Provart, Nicholas; Pasha, Asher; O'Meara, Abigail; Shakoor, Nadia; Michael, Todd P.; Harrison, Melanie; Ware, Doreen 分享 收藏
Gramene 2025: expanded comparative genomics and pathway resources, integrated search, and pan-genome portals for crop research Gramene 2025：扩展的比较基因组学和通路资源，集成的搜索功能以及用于作物研究的泛基因组门户 Olson, Andrew; Kumari, Sunita; Wei, Xuehong; Chougule, Kapeel; Lu, Zhenyuan; Tello-Ruiz, Marcela karey; Kumar, Vivek; Van buren, Peter; Olson, Audra; Kim, Catherine; Braynen, Janeen; Zhang, Lifang; Dyer, Sarah; Alvarez-Jarreta, Jorge; Saraf, Shradha; Contreras-Moreira, Bruno; Naamati, Guy; Ernst, Christina; Papatheodorou, Irene; George, Nancy; Jaiswal, Pankaj; Naithani, Sushma; Gupta, Parul; Elser, Justin; D'eustachio, Peter; Assmann, Sarah M.; Ferrero-Serrano, Angel; Pasha, Asher; Provart, Nicholas; Gladman, Nicholas; Ware, Doreen 分享 收藏
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GrameneOryza: a comprehensive resource for Oryza genomes, genetic variation, and functional data Wei, Sharon; Chougule, Kapeel; Olson, Andrew; Lu, Zhenyuan; Tello-Ruiz, Marcela K.; Kumar, Vivek; Kumari, Sunita; Zhang, Lifang; Olson, Audra; Kim, Catherine; Gladman, Nick; Ware, Doreen 分享 收藏
High-quality chromosome scale genome assemblies of two important Sorghum inbred lines, Tx2783 and RTx436 Wang, Bo; Chougule, Kapeel; Jiao, Yinping; Olson, Andrew; Kumar, Vivek; Gladman, Nicholas; Huang, Jian; Llaca, Victor; Fengler, Kevin; Wei, Xuehong; Wang, Liya; Wang, Xiaofei; Regulski, Michael; Drenkow, Jorg; Gingeras, Thomas; Hayes, Chad; Armstrong, J. Scott; Huang, Yinghua; Xin, Zhanguo; Ware, Doreen 分享 收藏
Ensembl 2024 Harrison, Peter W.; Amode, M. Ridwan; Austine-Orimoloye, Olanrewaju; Azov, Andrey G.; Barba, Matthieu; Barnes, If; Becker, Arne; Bennett, Ruth; Berry, Andrew; Bhai, Jyothish; Bhurji, Simarpreet Kaur; Boddu, Sanjay; Lins, Paulo R. Branco; Brooks, Lucy; Ramaraju, Shashank Budhanuru; Campbell, Lahcen, I; Martinez, Manuel Carbajo; Charkhchi, Mehrnaz; Chougule, Kapeel; Cockburn, Alexander; Davidson, Claire; De Silva, Nishadi H.; Dodiya, Kamalkumar; Donaldson, Sarah; El Houdaigui, Bilal; El Naboulsi, Tamara; Fatima, Reham; Giron, Carlos Garcia; Genez, Thiago; Grigoriadis, Dionysios; Ghattaoraya, Gurpreet S.; Martinez, Jose Gonzalez; Gurbich, Tatiana A.; Hardy, Matthew; Hollis, Zoe; Hourlier, Thibaut; Hunt, Toby; Kay, Mike; Kaykala, Vinay; Le, Tuan; Lemos, Diana; Lodha, Disha; Marques-Coelho, Diego; Maslen, Gareth; Merino, Gabriela Alejandra; Mirabueno, Louisse Paola; Mushtaq, Aleena; Hossain, Syed Nakib; Ogeh, Denye N.; Sakthivel, Manoj Pandian; Parker, Anne; Perry, Malcolm; Pilizota, Ivana; Poppleton, Daniel; Prosovetskaia, Irina; Raj, Shriya; Perez-Silva, Jose G.; Salam, Ahamed Imran Abdul; Saraf, Shradha; Saraiva-Agostinho, Nuno; Sheppard, Dan; Sinha, Swati; Sipos, Botond; Sitnik, Vasily; Stark, William; Steed, Emily; Suner, Marie-Marthe; Surapaneni, Likhitha; Sutinen, Kyosti; Tricomi, Francesca Floriana; Urbina-Gomez, David; Veidenberg, Andres; Walsh, Thomas A.; Ware, Doreen; Wass, Elizabeth; Willhoft, Natalie L.; Allen, Jamie; Alvarez-Jarreta, Jorge; Chakiachvili, Marc; Flint, Bethany; Giorgetti, Stefano; Haggerty, Leanne; Ilsley, Garth R.; Keatley, Jon; Loveland, Jane E.; Moore, Benjamin; Mudge, Jonathan M.; Naamati, Guy; Tate, John; Trevanion, Stephen J.; Winterbottom, Andrea; Frankish, Adam; Hunt, Sarah E.; Cunningham, Fiona; Dyer, Sarah; Finn, Robert D.; Martin, Fergal J.; Yates, Andrew D. 分享 收藏
Engineering homoeologs provide a fine scale for quantitative traits in polyploid 工程同源物为多倍体的数量性状提供了良好的尺度 Lee, Eun Song; Heo, Jung; Bang, Woo Young; Chougule, Kapeel M.; Waminal, Nomar Espinosa; Hong, Nguyen Thi; Kim, Min Ji; Beak, Hong Kwan; Kim, Yong Jun; Priatama, Ryza A.; Jang, Ji In; Cha, Kang Il; Son, Seung Han; Rajendran, Sujeevan; Choo, Young-Kug; Bae, Jong Hyang; Kim, Chul Min; Lee, Young Koung; Bae, Sangsu; Jones, Jonathan D. G.; Sohn, Kee Hoon; Lee, Jiyoung; Kim, Hyun Hee; Hong, Jong Chan; Ware, Doreen; Kim, Keunhwa; Park, Soon Ju 分享 收藏
Pan-genome inversion index reveals evolutionary insights into the subpopulation structure of Asian rice Zhou, Yong; Yu, Zhichao; Chebotarov, Dmytro; Chougule, Kapeel; Lu, Zhenyuan; Rivera, Luis F.; Kathiresan, Nagarajan; Al-Bader, Noor; Mohammed, Nahed; Alsantely, Aseel; Mussurova, Saule; Santos, Joao; Thimma, Manjula; Troukhan, Maxim; Fornasiero, Alice; Green, Carl D.; Copetti, Dario; Kudrna, David; Llaca, Victor; Lorieux, Mathias; Zuccolo, Andrea; Ware, Doreen; McNally, Kenneth; Zhang, Jianwei; Wing, Rod A. 分享 收藏
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Ten new high-quality genome assemblies for diverse bioenergy sorghum genotypes 用于不同生物能源高粱基因型的十个新的高质量基因组组装 Voelker, William G.; Krishnan, Krittika; Chougule, Kapeel; Alexander, Louie C.; Lu, Zhenyuan; Olson, Andrew; Ware, Doreen; Songsomboon, Kittikun; Ponce, Cristian; Brenton, Zachary W.; Boatwright, J. Lucas; Cooper, Elizabeth A. 分享 收藏
Benchmarking transposable element annotation methods for creation of a streamlined, comprehensive pipeline (vol 20, 275, 2019) Ou, Shujun; Su, Weijia; Liao, Yi; Chougule, Kapeel; Agda, Jireh R. A.; Hellinga, Adam J.; Lugo, Carlos Santiago Blanco; Elliott, Tyler A.; Ware, Doreen; Peterson, Thomas; Jiang, Ning; Hirsch, Candice N.; Hufford, Matthew B. 分享 收藏
SorghumBase: a web-based portal for sorghum genetic information and community advancement Gladman, Nicholas; Olson, Andrew; Wei, Sharon; Chougule, Kapeel; Lu, Zhenyuan; Tello-Ruiz, Marcela; Meijs, Ivar; Van Buren, Peter; Jiao, Yinping; Wang, Bo; Kumar, Vivek; Kumari, Sunita; Zhang, Lifang; Burke, John; Chen, Junping; Burow, Gloria; Hayes, Chad; Emendack, Yves; Xin, Zhanguo; Ware, Doreen 分享 收藏
Ensembl Genomes 2022: an expanding genome resource for non-vertebrates Ensembl基因组2022: 非脊椎动物的扩展基因组资源 Yates, Andrew D.; Allen, James; Amode, Ridwan M.; Azov, Andrey G.; Barba, Matthieu; Becerra, Andres; Bhai, Jyothish; Campbell, Lahcen, I; Martinez, Manuel Carbajo; Chakiachvili, Marc; Chougule, Kapeel; Christensen, Mikkel; Contreras-Moreira, Bruno; Cuzick, Alayne; Fioretto, Luca Da Rin; Davis, Paul; De Silva, Nishadi H.; Diamantakis, Stavros; Dyer, Sarah; Elser, Justin; Filippi, Carla, V; Gall, Astrid; Grigoriadis, Dionysios; Guijarro-Clarke, Cristina; Gupta, Parul; Hammond-Kosack, Kim E.; Howe, Kevin L.; Jaiswal, Pankaj; Kaikala, Vinay; Kumar, Vivek; Kumari, Sunita; Langridge, Nick; Le, Tuan; Luypaert, Manuel; Maslen, Gareth L.; Maurel, Thomas; Moore, Benjamin; Muffato, Matthieu; Mushtaq, Aleena; Naamati, Guy; Naithani, Sushma; Olson, Andrew; Parker, Anne; Paulini, Michael; Pedro, Helder; Perry, Emily; Preece, Justin; Quinton-Tulloch, Mark; Rodgers, Faye; Rosello, Marc; Ruffier, Magali; Seager, James; Sitnik, Vasily; Szpak, Michal; Tate, John; Tello-Ruiz, Marcela K.; Trevanion, Stephen J.; Urban, Martin; Ware, Doreen; Wei, Sharon; Williams, Gary; Winterbottom, Andrea; Zarowiecki, Magdalena; Finn, Robert D.; Flicek, Paul 分享 收藏
Gene disruption by structural mutations drives selection in US rice breeding over the last century Vaughn, Justin N.; Korani, Walid; Stein, Joshua C.; Edwards, Jeremy D.; Peterson, Daniel G.; Simpson, Sheron A.; Youngblood, Ramey C.; Grimwood, Jane; Chougule, Kapeel; Ware, Doreen H.; McClung, Anna M.; Scheffler, Brian E. 分享 收藏
Gramene 2021: harnessing the power of comparative genomics and pathways for plant research Tello-Ruiz, Marcela K.; Naithani, Sushma; Gupta, Parul; Olson, Andrew; Wei, Sharon; Preece, Justin; Jiao, Yinping; Wang, Bo; Chougule, Kapeel; Garg, Priyanka; Elser, Justin; Kumari, Sunita; Kumar, Vivek; Contreras-Moreira, Bruno; Naamati, Guy; George, Nancy; Cook, Justin; Bolser, Daniel; D'Eustachio, Peter; Stein, Lincoln D.; Gupta, Amit; Xu, Weijia; Regala, Jennifer; Papatheodorou, Irene; Kersey, Paul J.; Flicek, Paul; Taylor, Crispin; Jaiswal, Pankaj; Ware, Doreen 分享 收藏
Gapless assembly of maize chromosomes using long-read technologies 使用长读技术对玉米染色体进行无间隙组装 Liu, Jianing; Seetharam, Arun S.; Chougule, Kapeel; Ou, Shujun; Swentowsky, Kyle W.; Gent, Jonathan, I; Llaca, Victor; Woodhouse, Margaret R.; Manchanda, Nancy; Presting, Gernot G.; Kudrna, David A.; Alabady, Magdy; Hirsch, Candice N.; Fengler, Kevin A.; Ware, Doreen; Michael, Todd P.; Hufford, Matthew B.; Dawe, R. Kelly 分享 收藏
Effect of sequence depth and length in long-read assembly of the maize inbred NC358 序列深度和长度对玉米自交系NC358长序列组装的影响 Ou, Shujun; Liu, Jianing; Chougule, Kapeel M.; Fungtammasan, Arkarachai; Seetharam, Arun S.; Stein, Joshua C.; Llaca, Victor; Manchanda, Nancy; Gilbert, Amanda M.; Wei, Sharon; Chin, Chen-Shan; Hufnagel, David E.; Pedersen, Sarah; Snodgrass, Samantha J.; Fengler, Kevin; Woodhouse, Margaret; Walenz, Brian P.; Koren, Sergey; Phillippy, Adam M.; Hannigan, Brett T.; Dawe, R. Kelly; Hirsch, Candice N.; Hufford, Matthew B.; Ware, Doreen 分享 收藏
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