Rob J. L. Willems - Publications, H-index & Citations

Rob J. L. Willems

university medical center utrecht

78H指数

340论文数

2.2W被引数

收录论文 158

发表时间

gplasCC: classification and recovery of plasmids from short-read sequencing data for any bacterial species gplasCC：从短读测序数据中分类和恢复任何细菌物种的质粒

NAR Genomics and Bioinformatics

IF2.8

2026-03-14

OAAI

Julian A Paganini; Jesse J Kerkvliet; Oscar Jordan; Gijs Teunis; Nienke L Plantinga; Rodrigo Meneses; Rob J L Willems; Sergio Arredondo-Alonso; Anita C Schürch; null

Coccidiosis prevention strategies shape the microbiome, resistome and mobilome composition in the broiler gut 球虫病预防策略塑造肉鸡肠道中微生物组、抗性组和移动组的组成

Animal Microbiome

IF4.4

2026-01-12

OAAI

Matteo Buffoni; Jesse J. Kerkvliet; Henk Enting; Jannigje G. Kers; Malbert Rogers; J. Arjan G. M. de Visser; Fernanda L. Paganelli; Rob J.L. Willems; Anita C. Schürch

Effect of black soldier fly (Hermetia illucens) larvae oil feed inclusion on growth performance and fecal microbiome development in post-weaning pigs Buffoni, M.; Viveen, M.; De Visser, J.A.G.; Mughini-Gras, L.; Willems, R.J.; Schürch, A.C.; Kers, J.G. 黑 soldier fly (Hermetia illucens) larvae oil feed inclusion 对断奶后仔猪生长性能和粪便微生物群发展的影响. Livest. Sci. 2025, 301, 105819. [Google Scholar] [CrossRef]

LIVESTOCK SCIENCE

IF1.9

2025-09-01

OAAI

Buffoni, Matteo; Viveen, Marco; De Visser, J. Arjan G. M.; Mughini-Gras, Lapo; Willems, Rob J. L.; Schurch, Anita; Kers, Jannigje G.

Fusobacterium nucleatum upregulates the immune inhibitory receptor PD-L1 in colorectal cancer cells via the activation of ALPK1 梭杆菌属核杆菌通过激活ALPK1上调结直肠癌细胞中的免疫抑制受体PD-L1。

GUT MICROBES

IF11

2025-01-29

OAAI

Coco Duizer; Moniek Salomons; Merel van Gogh; Sanne Gräve; Freke A. Schaafsma; Maaike J. Stok; Merel Sijbranda; Raghuvandhanan Kumarasamy Sivasamy; Rob J. L. Willems; Marcel R. de Zoete

Dissemination of IncQ1 Plasmids Harboring NTEKPC-IId in a Brazilian Hospital

MICROORGANISMS

IF4.2

2025-01-16

OAAI

Boralli, Camila Maria dos Santos; Paganini, Julian Andres; Meneses, Rodrigo Silva; da Mata, Camila Pacheco Silveira Martins; Leite, Edna Marilea Meireles; Schurch, Anita C.; Paganelli, Fernanda L.; Willems, Rob J. L.; Camargo, Ilana L. B. C.

Gut microbial dysbiosis, IgA, and Enterococcus in common variable immunodeficiency with immune dysregulation 肠道微生物失调、IgA 和肠球菌在伴有免疫失调的共同变异型免疫缺陷中的作用

MICROBIOME

IF12.7

2025-01-16

OAAI

Berbers, Roos-Marijn; Paganelli, Fernanda L.; van Montfrans, Joris M.; Ellerbroek, Pauline M.; Viveen, Marco C.; Rogers, Malbert R. C.; Salomons, Moniek; Schuurmans, Jaap; Thans, Martine van Stigt; Vanmaris, Remi M. M.; Brosens, Lodewijk A. A.; van der Wal, Maria Marlot; Dalm, Virgil A. S. H.; van Hagen, P. Martin; van de Ven, Annick A. J. M.; Uh, Hae-Won; van Wijk, Femke; Willems, Rob J. L.; Leavis, Helen L.

Pangenome-spanning epistasis and coselection analysis via de Bruijn graphs

GENOME RESEARCH

IF5.5

2024-08-12

OAAI

Kuronen, Juri; Horsfield, Samuel T.; Pontinen, Anna K.; Mallawaarachchi, Sudaraka; Arredondo-Alonso, Sergio; Thorpe, Harry; Gladstone, Rebecca A.; Willems, Rob J. L.; Bentley, Stephen D.; Croucher, Nicholas J.; Pensar, Johan; Lees, John A.; Tonkin-Hill, Gerry; Corander, Jukka

PlasmidEC and gplas2: an optimized short- read approach to predict and reconstruct antibiotic resistance plasmids in Escherichia coli

MICROBIAL GENOMICS

IF4

2024-02-20

OAAI

Paganini, Julian A.; Kerkvliet, Jesse J.; Vader, Lisa; Plantinga, Nienke L.; Meneses, Rodrigo; Corander, Jukka; Willems, Rob J. L.; Arredondo-Alonso, Sergio; Schurch, Anita C.

The population-level impact of Enterococcus faecalis genetics on intestinal colonization and extraintestinal infection 粪肠球菌遗传学对肠道定植和肠外感染的群体水平影响

MICROBIOLOGY SPECTRUM

IF3.8

2023-12-12

OAAI

Chaguza, Chrispin; Poentinen, Anna K.; Top, Janetta; Arredondo-Alonso, Sergio; Freitas, Ana R.; Novais, Carla; Torres, Carmen; Bentley, Stephen D.; Peixe, Luisa; Coque, Teresa M.; Willems, Rob J. L.; Corander, Jukka

Gut microbiome dynamics in index patients colonized with extended-spectrum beta-lactamase (ESBL)-producing Enterobacterales after hospital discharge and their household contacts

MICROBIOLOGY SPECTRUM

IF3.8

2023-12-12

OAAI

Top, Janetta; Verschuuren, Tess D.; Viveen, Marco C.; Riccio, M. Eugenia; Harbarth, Stephan; Kluytmans, Jan A. J. W.; Willems, Rob J. L.; Paganelli, Fernanda L.

Unraveling Enterococcus susceptibility to quaternary ammonium compounds: genes, phenotypes, and the impact of environmentalconditionsenvironmental conditions

MICROBIOLOGY SPECTRUM

IF3.8

2023-10-17

OAAI

Pereira, Ana P.; Antunes, Patricia; Bierge, Paula; Willems, Rob J. L.; Corander, Jukka; Coque, Teresa M.; Pich, Oscar Q.; Peixe, Luisa; Freitas, Ana R.; Novais, Carla

Gut Colonization by ESBL-Producing Escherichia coli in Dogs Is Associated with a Distinct Microbiome and Resistome Composition

MICROBIOLOGY SPECTRUM

IF3.8

2023-08-17

OAAI

Stege, Paul B.; Hordijk, Joost; Sandholt, Arnar K. S.; Zomer, Aldert L.; Viveen, Marco C.; Rogers, Malbert R. C.; Salomons, Moniek; Wagenaar, Jaap A.; Mughini-Gras, Lapo; Willems, Rob J. L.; Paganelli, Fernanda L.

Characterization of blaKPC-2 and blaNDM-1 Plasmids of a K. pneumoniae ST11 Outbreak Clone 肺炎克雷伯菌ST11暴发克隆的blaKPC-2和blaNDM-1质粒的鉴定

ANTIBIOTICS-BASEL

IF4.6

2023-05-18

OAAI

Enterococcus spp. from chicken meat collected 20 years apart overcome multiple stresses occurring in the poultry production chain: Antibiotics, copper and acids

INTERNATIONAL JOURNAL OF FOOD MICROBIOLOGY

IF5.2

2023-01-01

OAAI

Rebelo, Andreia; Duarte, Barbara; Ferreira, Carolina; Moura, Joana; Ribeiro, Sofia; Freitas, Ana R.; Coque, Teresa M.; Willems, Rob; Corander, Jukka; Peixe, Luisa; Antunes, Patricia; Novais, Carla

Species-Specific Patterns of Gut Metabolic Modules in Dutch Individuals with Different Dietary Habits

MSPHERE

IF3.1

2022-12-21

OAAI

Shetty, Sudarshan A.; Stege, Paul B.; Hordijk, Joost; Gijsbers, Esther; Dierikx, Cindy M.; van Duijkeren, Engeline; Franz, Eelco; Willems, Rob J. L.; Paganelli, Fernanda L.; Fuentes, Susana

External validation of WGS-based antimicrobial susceptibility prediction tools, KOVER-AMR and ResFinder 4.1, for Escherichia coli clinical isolates

CLINICAL MICROBIOLOGY AND INFECTION

IF8.5

2022-11-01

OAAI

Verschuuren, Tess; Bosch, Thijs; Mascaro, Valentina; Willems, Rob; Kluytmans, Jan

Evolution of Chlorhexidine Susceptibility and of the EfrEF Operon among Enterococcus faecalis from Diverse Environments, Clones, and Time Spans

MICROBIOLOGY SPECTRUM

IF3.8

2022-08-31

OAAI

Pereira, Ana P.; Antunes, Patricia; Willems, Rob; Corander, Jukka; Coque, Teresa M.; Peixe, Luisa; Freitas, Ana R.; Novais, Carla

Effects of early-life antibiotics on the developing infant gut microbiome and resistome: a randomized trial 早期抗生素对发育中的婴儿肠道微生物组和抵抗组的影响: 一项随机试验

NATURE COMMUNICATIONS

IF15.7

2022-02-16

135

OAAI

Reyman, Marta; van Houten, Marlies A.; Watson, Rebecca L.; Chu, Mei Ling J. N.; Arp, Kayleigh; de Waal, Wouter J.; Schiering, Irene; Plotz, Frans B.; Willems, Rob J. L.; van Schaik, Willem; Sanders, Elisabeth A. M.; Bogaert, Debby

Impact of long-term dietary habits on the human gut resistome in the Dutch population

SCIENTIFIC REPORTS

IF3.9

2022-02-03

OAAI

Stege, Paul B.; Hordijk, Joost; Shetty, Sudarshan A.; Visser, Michael; Viveen, Marco C.; Rogers, Malbert R. C.; Gijsbers, Esther; Dierikx, Cindy M.; van der Plaats, Rozemarijn Q. J.; van Duijkeren, Engeline; Franz, Eelco; Willems, Rob J. L.; Fuentes, Susana; Paganelli, Fernanda L.

The oropharyngeal microbiome of COPD patients and controls in a livestock dense area

EUROPEAN RESPIRATORY JOURNAL

IF21

2021-11-25

PREAI

van Kersen, Warner; Bossers, Alex; Piters, Wouter A. A. De Steenhuijsen; De Rooij, Myrna M. T.; Oldenwening, Marieke; Bonten, Marc; Fluit, Ad C.; Heederik, Dick; Paganelli, Fernanda L.; Rogers, Malbert; Viveen, Marco; Willems, Rob; Bogaert, Debby; Leavis, Helen L.; Smit, Lidwien A. M.

研究方向