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Yatish Turakhia

University of California

20H指数
83论文数
2.2K被引数
收录论文 21
发表时间
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metaWEPP: leveraging biobank-scale intra-species phylogenies for near-haplotype resolution in metagenomic analysismetaWEPP：利用生物银行规模种内系统发育谱构建以实现元基因组分析中的近单倍型分辨率
errNAR Genomics and Bioinformatics
IF2.8
err2026-07-22
err0
errOAAI
errPranav Gangwar; Qiwen Xu; Jaden Seangmany; Pratik Katte; Yatish Turakhia
err分享
err收藏
Ultrafast and ultralarge distance-based phylogenetics using DIPPER基于DIPPER的超快和超远距离系统发育分析
errNature Computational Science
IF18.3
err2026-07-08
err0
PREAI
errSumit Walia; Zexing Chen; Yu-Hsiang Tseng; Yatish Turakhia
err分享
err收藏
Compressive pangenomics using mutation-annotated networks基于突变注释网络的压缩泛基因组学
errNature Genetics
IF29
err2026-01-12
err0
PREAI
errSumit Walia; Harsh Motwani; Yu-Hsiang Tseng; Kyle Smith; Russell Corbett-Detig; Yatish Turakhia
err分享
err收藏
Accurate, scalable, and fully automated inference of species trees from raw genome assemblies using ROADIES使用ROADIES从原始基因组组装中精确、可扩展且完全自动化地推断物种系统发育树
errPROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
IF9.1
err2025-05-02
err1
errOAAI
errGupta, Anshu; Mirarab, Siavash; Turakhia, Yatish
err分享
err收藏
Toward a Generalized Accelerator for Genome Sequence Analysis通用基因组序列分析加速器的研究
errCOMMUNICATIONS OF THE ACM
IF12.2
err2025-04-29
err0
PREAI
errTurakhia, Yatish
err分享
err收藏
SARS-CoV-2 lineage assignments using phylogenetic placement/UShER are superior to pangoLEARN machine-learning method
errVIRUS EVOLUTION
IF4
err2024-01-11
err1
errOAAI
errde Bernardi Schneider, Adriano; Su, Michelle; Hinrichs, Angie S.; Wang, Jade; Amin, Helly; Bell, John; Wadford, Debra A.; O'Toole, Aine; Scher, Emily; Perry, Marc D.; Turakhia, Yatish; De Maio, Nicola; Hughes, Scott; Corbett-Detig, Russ
err分享
err收藏
The ongoing evolution of UShER during the SARS-CoV-2 pandemic
errNATURE GENETICS
IF31.8
err2023-12-28
err3
PREAI
errHinrichs, Angie; Ye, Cheng; Turakhia, Yatish; Corbett-Detig, Russell
err分享
err收藏
Whole-genome Comparisons Identify Repeated Regulatory Changes Underlying Convergent Appendage Evolution in Diverse Fish Lineages
errMOLECULAR BIOLOGY AND EVOLUTION
IF5.3
err2023-09-21
err0
errOAAI
errChen, Heidi I.; Turakhia, Yatish; Bejerano, Gill; Kingsley, David M.
err分享
err收藏
Online Phylogenetics with matOptimize Produces Equivalent Trees and is Dramatically More Efficient for Large SARS-CoV-2 Phylogenies than de novo and Maximum-Likelihood Implementations使用matOptimize的在线系统发育学产生等效的树，并且对于大型SARS-CoV-2系统发育比从头和最大似然实现更有效
errSYSTEMATIC BIOLOGY
IF5.7
err2023-05-26
err9
errOAAI
errKramer, Alexander M.; Thornlow, Bryan; Ye, Cheng; De Maio, Nicola; McBroome, Jakob; Hinrichs, Angie S.; Lanfear, Robert; Turakhia, Yatish; Corbett-Detig, Russell
err分享
err收藏
A lung- specific mutational signature enables inference of viral and bacterial respiratory niche
errMICROBIAL GENOMICS
IF4
err2023-05-15
err7
errOAAI
errRuis, Christopher; Peacock, Thomas P.; Polo, Luis M.; Masone, Diego; Alvarez, Maria Soledad; Hinrichs, Angie S.; Turakhia, Yatish; Cheng, Ye; McBroome, Jakob; Corbett-Detig, Russell; Parkhill, Julian; Floto, R. Andres
err分享
err收藏
Maximum likelihood pandemic-scale phylogenetics最大似然大流行尺度系统发育学
errNATURE GENETICS
IF31.8
err2023-04-10
err21
errOAAI
errDe Maio, Nicola; Kalaghatgi, Prabhav; Turakhia, Yatish; Corbett-Detig, Russell; Minh, Bui Quang; Goldman, Nick
err分享
err收藏
Identifying SARS-CoV-2 regional introductions and transmission clusters in real time
errVIRUS EVOLUTION
IF4
err2022-06-16
err15
errOAAI
errMcBroome, Jakob; Martin, Jennifer; de Bernardi Schneider, Adriano; Turakhia, Yatish; Corbett-Detig, Russell
err分享
err收藏
Champagne: Automated Whole-Genome Phylogenomic Character Matrix Method Using Large Genomic Indels for Homoplasy-Free Inference
errGENOME BIOLOGY AND EVOLUTION
IF2.8
err2022-02-16
err5
errOAAI
errSchull, James K.; Turakhia, Yatish; Hemker, James A.; Dally, William J.; Bejerano, Gill
err分享
err收藏
A Daily-Updated Database and Tools for Comprehensive SARS-CoV-2 Mutation-Annotated Trees每日更新的数据库和工具，用于全面SARS-CoV-2带突变注释的树
errMOLECULAR BIOLOGY AND EVOLUTION
IF5.3
err2021-09-01
err53
errOAAI
errMcBroome, Jakob; Thornlow, Bryan; Hinrichs, Angie S.; Kramer, Alexander; De Maio, Nicola; Goldman, Nick; Haussler, David; Corbett-Detig, Russell; Turakhia, Yatish
err分享
err收藏
Ultrafast Sample placement on Existing tRees (UShER) enables real-time phylogenetics for the SARS-CoV-2 pandemic现有树上的超快样本放置 (UShER) 可以实现SARS-CoV-2大流行的实时系统发育
errNATURE GENETICS
IF31.8
err2021-05-10
err202
errOAAI
errTurakhia, Yatish; Thornlow, Bryan; Hinrichs, Angie S.; De Maio, Nicola; Gozashti, Landen; Lanfear, Robert; Haussler, David; Corbett-Detig, Russell
err分享
err收藏
Mutation Rates and Selection on Synonymous Mutations in SARS-CoV-2SARS-CoV-2同义突变的突变率和选择
errGENOME BIOLOGY AND EVOLUTION
IF2.8
err2021-04-24
err73
errOAAI
errDe Maio, Nicola; Walker, Conor R.; Turakhia, Yatish; Lanfear, Robert; Corbett-Detig, Russell; Goldman, Nick
err分享
err收藏
Stability of SARS-CoV-2 phylogeniesSARS-CoV-2系统发育的稳定性
errPLOS GENETICS
IF3.7
err2020-11-18
err64
errOAAI
errTurakhia, Yatish; De Maio, Nicola; Thornlow, Bryan; Gozashti, Landen; Lanfear, Robert; Walker, Conor R.; Hinrichs, Angie S.; Fernandes, Jason D.; Borges, Rui; Slodkowicz, Greg; Weilguny, Lukas; Haussler, David; Goldman, Nick; Corbett-Detig, Russell
err分享
err收藏
A fully-automated method discovers loss of mouse-lethal and human-monogenic disease genes in 58 mammals
errNUCLEIC ACIDS RESEARCH
IF13.1
err2020-07-02
err5
errOAAI
errTurakhia, Yatish; Chen, Heidi, I; Marcovitz, Amir; Bejerano, Gill
err分享
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Domain-Specific Hardware Accelerators
errCOMMUNICATIONS OF THE ACM
IF12.2
err2020-06-18
err159
errOAAI
errDally, William J.; Turakhia, Yatish; Han, Song
err分享
err收藏
A functional enrichment test for molecular convergent evolution finds a clear protein-coding signal in echolocating bats and whales用于分子收敛进化的功能富集测试在回声蝙蝠和鲸鱼中发现了清晰的蛋白质编码信号
errPROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA
IF9.1
err2019-09-30
err32
errOAAI
errMarcovitz, Amir; Turakhia, Yatish; Chen, Heidi I.; Gloudemans, Michael; Braun, Benjamin A.; Wang, Haoqing; Bejerano, Gill
err分享
err收藏

研究方向

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合作学者
合作期刊
J
Julian Parkhill
H 指数: 177 · 论文数: 1.1K
D
David Haussler
H 指数: 175 · 论文数: 721
W
William J. Dally
H 指数: 93 · 论文数: 456
N
Nick Goldman
H 指数: 66 · 论文数: 191
D
David M. Kingsley
H 指数: 66 · 论文数: 178
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