Joshua H. Siegle - Publications, H-index & Citations

Joshua H. Siegle

Allen Institute

30H指数

95论文数

7.7K被引数

收录论文 22

发表时间

Topographic structure and function of locus coeruleus noradrenaline neurons 蓝斑去甲肾上腺素神经元的地形结构与功能

Nature

IF48.5

2026-09-16

OAAI

Zhixiao Su; Polina Kosillo; Kanghoon Jung; Shuonan Chen; Mathew T. Summers; Alex Piet; Han Hou; Kenta M. Hagihara; Drew Friedmann; Olivia Ho-Shing; Matthew I. Becker; Thomas Chartrand; Xinxin Yin; Peter Grotz; Ella Hilton-VanOsdall; Margaret Lee; Rajvi Javeri; Samantha L. Tuggle; Naveen Ouellette; Holly Myers; Judith Baka; Camilo Laiton; Kaelin Wulf; John Rohde; Alessio P. Buccino; Cameron Arshadi; Di Wang; Sharmishtaa Seshamani; Sonya Vasquez; Carolyn M. Eng; Douglas R. Ollerenshaw; Nick Dee; Tamara Casper; Windy Ho; Matthew Jungert; Atlas Jordan; Elliot Phillips; Anish Bhaswanth Chakka; Kamiliam Nasirova; Krista Blake; Audrey McCutcheon; Megan Koch; Maria Camila Vergara; Kimberly A. Smith; Tim Jarsky; Nicholas Lusk; Mara C. P. Rue; Xiaoyin Chen; Joshua H. Siegle; Adam K. Glaser; Brian R. Lee; Karel Svoboda; Yoh Isogai; Jayaram V. Chandrashekar; Jeremiah Y. Cohen

Neuropixels Opto: combining high-resolution electrophysiology and optogenetics 神经像素光: 结合高分辨率电生理学和光遗传学

Nature Methods

IF32.1

2026-06-01

OAAI

Anna A. Lakunina; Karolina Z. Socha; Alexander E. Ladd; Anna J. Bowen; Susu Chen; Jennifer Colonell; Anjal Doshi; Bill Karsh; Michael Krumin; Pavel Kulik; Anna J. Li; Pieter Neutens; John O’Callaghan; Meghan Olsen; Jan Putzeys; Charu Bai Reddy; Harrie A. C. Tilmans; Sara Vargas; Marleen Welkenhuysen; Zhiwen Ye; Michael Häusser; Christof Koch; Jonathan T. Ting; Barundeb Dutta; Timothy D. Harris; Nicholas A. Steinmetz; Karel Svoboda; Joshua H. Siegle; Matteo Carandini

Large-scale electrophysiology at single-spike resolution 单尖峰分辨率的大规模电生理学

Nature Reviews Neuroscience

IF26.7

2026-05-01

PREAI

Joshua H. Siegle; Nicholas A. Steinmetz

Ultra-high-density Neuropixels probes improve detection and identification in neuronal recordings 超高密度Neuropixels探针提高了神经元记录中的检测和识别能力

Neuron

IF15

2025-09-30

OAAI

Zhiwen Ye; Andrew M. Shelton; Jordan R. Shaker; Julien Boussard; Jennifer Colonell; Daniel Birman; Sahar Manavi; Susu Chen; Charlie Windolf; Cole Hurwitz; Han Yu; Tomoyuki Namima; Federico Pedraja; Shahaf Weiss; Bogdan C. Raducanu; Torbjørn V. Ness; Xiaoxuan Jia; Giulia Mastroberardino; L. Federico Rossi; Matteo Carandini; Michael Häusser; Gaute T. Einevoll; Gilles Laurent; Nathaniel B. Sawtell; Wyeth Bair; Anitha Pasupathy; Carolina Mora Lopez; Barundeb Dutta; Liam Paninski; Joshua H. Siegle; Christof Koch; Shawn R. Olsen; Timothy D. Harris; Nicholas A. Steinmetz

ONIX: a unified open-source platform for multimodal neural recording and perturbation during naturalistic behavior

NATURE METHODS

IF32.1

2024-11-11

OAAI

Newman, Jonathan P.; Zhang, Jie; Cuevas-Lopez, Aaron; Miller, Nicholas J.; Honda, Takato; van der Goes, Marie-Sophie H.; Leighton, Alexandra H.; Carvalho, Filipe; Lopes, Goncalo; Lakunina, Anna; Siegle, Joshua H.; Harnett, Mark T.; Wilson, Matthew A.; Voigts, Jakob

SHIELD: Skull-shaped hemispheric implants enabling large-scale electrophysiology datasets in the mouse brain

NEURON

IF15

2024-09-01

OAAI

Bennett, Corbett; Ouellette, Ben; Ramirez, Tamina K.; Cahoon, Alex; Cabasco, Hannah; Browning, Yoni; Lakunina, Anna; Lynch, Galen F.; McBride, Ethan G.; Belski, Hannah; Gillis, Ryan; Grasso, Conor; Howard, Robert; Johnson, Tye; Smith, Heston; Loeffler, Henry; Sullivan, David; Williford, Allison; Caldejon, Shiella; Durand, Severine; Gale, Samuel; Guthrie, Alan; Ha, Vivian; Han, Warren; Hardcastle, Ben; Mochizuki, Chris; Sridhar, Arjun; Suarez, Lucas; Swapp, Jackie; Wilkes, Joshua; Siegle, Joshua H.; Farrell, Colin; Groblewski, Peter A.; Olsen, Shawn R.

Compression strategies for large-scale electrophysiology data

JOURNAL OF NEURAL ENGINEERING

IF3.8

2023-09-18

OAAI

Buccino, Alessio P.; Winter, Olivier; Bryant, David; Feng, David; Svoboda, Karel; Siegle, Joshua H.

Sharing neurophysiology data from the Allen Brain Observatory

ELIFE

IF0

2023-07-11

OAAI

de Vries, Saskia E. J.; Siegle, Joshua H.; Koch, Christof

Acute head-fixed recordings in awake mice with multiple Neuropixels probes

NATURE PROTOCOLS

IF16

2022-12-07

PREAI

Durand, Severine; Heller, Greggory R.; Ramirez, Tamina K.; Luviano, Jennifer A.; Williford, Allison; Sullivan, David T.; Cahoon, Alex J.; Farrell, Colin; Groblewski, Peter A.; Bennett, Corbett; Siegle, Joshua H.; Olsen, Shawn R.

Multi-regional module-based signal transmission in mouse visual cortex

NEURON

IF15

2022-05-01

OAAI

Jia, Xiaoxuan; Siegle, Joshua H.; Durand, Severine; Heller, Greggory; Ramirez, Tamina K.; Koch, Christof; Olsen, Shawn R.

CellExplorer: A framework for visualizing and characterizing single neurons

NEURON

IF15

2021-11-01

OAAI

Petersen, Peter C.; Siegle, Joshua H.; Steinmetz, Nicholas A.; Mahallati, Sara; Buzsaki, Gyorgy

Removing independent noise in systems neuroscience data using DeepInterpolation

NATURE METHODS

IF32.1

2021-10-14

OAAI

Lecoq, Jerome; Oliver, Michael; Siegle, Joshua H.; Orlova, Natalia; Ledochowitsch, Peter; Koch, Christof

Reconciling functional differences in populations of neurons recorded with two-photon imaging and electrophysiology

ELIFE

IF0

2021-07-16

OAAI

Siegle, Joshua H.; Ledochowitsch, Peter; Jia, Xiaoxuan; Millman, Daniel J.; Ocker, Gabriel K.; Caldejon, Shiella; Casal, Linzy; Cho, Andy; Denman, Daniel J.; Durand, Severine; Groblewski, Peter A.; Heller, Gregg; Kato, India; Kivikas, Sara; Lecoq, Jerome; Nayan, Chelsea; Ngo, Kiet; Nicovich, Philip R.; North, Kat; Ramirez, Tamina K.; Swapp, Jackie; Waughman, Xana; Williford, Ali; Olsen, Shawn R.; Koch, Christof; Buice, Michael A.; de Vries, Saskia E. J.

Survey of spiking in the mouse visual system reveals functional hierarchy 鼠标视觉系统中的尖峰调查揭示了功能层次

NATURE

IF48.5

2021-01-20

258

OAAI

Siegle, Joshua H.; Jia, Xiaoxuan; Durand, Severine; Gale, Sam; Bennett, Corbett; Graddis, Nile; Heller, Greggory; Ramirez, Tamina K.; Choi, Hannah; Luviano, Jennifer A.; Groblewski, Peter A.; Ahmed, Ruweida; Arkhipov, Anton; Bernard, Amy; Billeh, Yazan N.; Brown, Dillan; Buice, Michael A.; Cain, Nicolas; Caldejon, Shiella; Casal, Linzy; Cho, Andrew; Chvilicek, Maggie; Cox, Timothy C.; Dai, Kael; Denman, Daniel J.; de Vries, Saskia E. J.; Dietzman, Roald; Esposito, Luke; Farrell, Colin; Feng, David; Galbraith, John; Garrett, Marina; Gelfand, Emily C.; Hancock, Nicole; Harris, Julie A.; Howard, Robert; Hu, Brian; Hytnen, Ross; Iyer, Ramakrishnan; Jessett, Erika; Johnson, Katelyn; Kato, India; Kiggins, Justin; Lambert, Sophie; Lecoq, Jerome; Ledochowitsch, Peter; Lee, Jung Hoon; Leon, Arielle; Li, Yang; Liang, Elizabeth; Long, Fuhui; Mace, Kyla; Melchior, Jose; Millman, Daniel; Mollenkopf, Tyler; Nayan, Chelsea; Ng, Lydia; Ngo, Kiet; Nguyen, Thuyahn; Nicovich, Philip R.; North, Kat; Ocker, Gabriel Koch; Ollerenshaw, Doug; Oliver, Michael; Pachitariu, Marius; Perkins, Jed; Reding, Melissa; Reid, David; Robertson, Miranda; Ronellenfitch, Kara; Seid, Sam; Slaughterbeck, Cliff; Stoecklin, Michelle; Sullivan, David; Sutton, Ben; Swapp, Jackie; Thompson, Carol; Turner, Kristen; Wakeman, Wayne; Whitesell, Jennifer D.; Williams, Derric; Williford, Ali; Young, Rob; Zeng, Hongkui; Naylor, Sarah; Phillips, John W.; Reid, R. Clay; Mihalas, Stefan; Olsen, Shawn R.; Koch, Christof

SpikeInterface, a unified framework for spike sorting SpikeInterface，一个统一的尖峰排序框架

ELIFE

IF0

2020-11-10

125

OAAI

Buccino, Alessio P.; Hurwitz, Cole L.; Garcia, Samuel; Magland, Jeremy; Siegle, Joshua H.; Hurwitz, Roger; Hennig, Matthias H.

Systematic Integration of Structural and Functional Data into Multi-scale Models of Mouse Primary Visual Cortex

NEURON

IF15

2020-05-01

135

OAAI

Billeh, Yazan N.; Cai, Binghuang; Gratiy, Sergey L.; Dai, Kael; Iyer, Ramakrishnan; Gouwens, Nathan W.; Abbasi-Asl, Reza; Jia, Xiaoxuan; Siegle, Joshua H.; Olsen, Shawn R.; Koch, Christof; Mihalas, Stefan; Arkhipov, Anton

Neuropixels Data-Acquisition System: A Scalable Platform for Parallel Recording of 10 000 Electrophysiological Signals

ieee transactions on circuits and systems i regular papers

IF4.9

2019-12-01

OAAI

Putzeys, Jan; Raducanu, Bogdan C.; Carton, Alain; De Ceulaer, Jef; Karsh, Bill; Siegle, Joshua H.; Van Helleputte, Nick; Harris, Timothy D.; Musa, Silke; Lopez, Carolina Mora

Open Ephys: an open-source, plugin-based platform for multichannel electrophysiology Open Ephys: 一个基于插件的开源多通道电生理学平台

JOURNAL OF NEURAL ENGINEERING

IF3.8

2017-06-05

324

OAAI

Siegle, Joshua H.; Lopez, Aaron Cuevas; Patel, Yogi A.; Abramov, Kirill; Ohayon, Shay; Voigts, Jakob

Neurodata Without Borders: Creating a Common Data Format for Neurophysiology Neurodata无国界: 为神经生理学创建通用数据格式

NEURON

IF15

2015-11-01

122

OAAI

Teeters, Jeffery L.; Godfrey, Keith; Young, Rob; Dang, Chinh; Friedsam, Claudia; Wark, Barry; Asari, Hiroki; Peron, Simon; Li, Nuo; Peyrache, Adrien; Denisov, Gennady; Siegle, Joshua H.; Olsen, Shawn R.; Martin, Christopher; Chun, Miyoung; Tripathy, Shreejoy; Blanche, Timothy J.; Harris, Kenneth; Buzsaki, Gyoergy; Koch, Christof; Meister, Markus; Svoboda, Karel; Sommer, Friedrich T.

Enhancement of encoding and retrieval functions through theta phase-specific manipulation of hippocampus 通过海马的theta相位特异性操纵增强编码和检索功能

ELIFE

IF0

2014-07-29

220

OAAI

Siegle, Joshua H.; Wilson, Matthew A.

研究方向