Si‐Min He - Publications, H-index & Citations

贺

贺思敏 (Si‐Min He)

chinese academy of sciences

33H指数

103论文数

5.2K被引数

收录论文 37

发表时间

To cleave or not to cleave: a systemic evaluation of DSS versus DSSO for cross-linking mass spectrometry analysis 是裂解还是不裂解：系统评价DSS与DSSO在交联质谱分析中的应用

Molecular Systems Biology

IF7.7

2026-06-09

OAAI

Yong Cao; Peng-Zhi Mao; Qing-Cui Wu; Zhen-Lin Chen; Jin-Cai Yang; Yue Zhao; Adalet Memetimin; Hao Chi; Xiang-Bing Qi; Si-Min He; Meng-Qiu Dong

Correction: Global Analysis of Protein and Small-Molecule Substrates of Ubiquitin-Like Proteins 更正：泛素样蛋白的蛋白质和小分子底物的全球分析

Molecular & Cellular Proteomics

IF5.5

2026-03-04

OAAI

Guang-Can Shao; Zhen-Lin Chen; Shan Lu; Qing-Cui Wu; Yao Sheng; Jing Wang; Yan Ma; Jian-Hua Sui; Hao Chi; Xiang-Bing Qi; Si-Min He; Li-Lin Du; Meng-Qiu Dong

Global analysis of protein and small-molecule substrates of ubiquitin-like proteins (UBLs)泛素样蛋白（UBLs）的蛋白质和小分子底物的全球分析

Molecular & Cellular Proteomics

IF5.5

2025-07-01

OAAI

Guang-Can Shao; Zhen-Lin Chen; Shan Lu; Qing-Cui Wu; Yao Sheng; Jing Wang; Yan Ma; Jian-Hua Sui; Hao Chi; Xiang-Bing Qi; Si-Min He; Li-Lin Du; Meng-Qiu Dong

Heterogeneity of Ecosystem Service Interactions Through Scale Effects and Time Effects and Their Social-Ecological Determinants in the Tuo River Basin

LAND

IF3.2

2025-01-07

OAAI

He, Simin; Xie, Yusong; Zhang, Jing; Luo, Yanyun; Wang, Qianna

Probing the contribution of bismuth on electronic transport and phonon scattering properties of Mg3Sb2-xBix solid solutions

JOURNAL OF ALLOYS AND COMPOUNDS

IF6.3

2024-11-01

PREAI

He, Simin; Ma, Ying; Li, Xin; Zhong, Hong; Luo, Xixi; Xia, Zhenchao; Zhang, Yalong; Yan, Kaiming; Liang, Zhenyao; Xie, Hui

A review of common statistical methods for dealing with multiple pollutant mixtures and multiple exposures

FRONTIERS IN PUBLIC HEALTH

IF3.4

2024-05-09

OAAI

Zhu, Guiming; Wen, Yanchao; Cao, Kexin; He, Simin; Wang, Tong

Precise, fast and comprehensive analysis of intact glycopeptides and modified glycans with pGlyco3

NATURE METHODS

IF32.1

2021-11-25

109

OAAI

Zeng, Wen-Feng; Cao, Wei-Qian; Liu, Ming-Qi; He, Si-Min; Yang, Peng-Yuan

pDeepXL: MS/MS Spectrum Prediction for Cross-Linked Peptide Pairs by Deep Learning

JOURNAL OF PROTEOME RESEARCH

IF3.6

2021-04-06

PREAI

Chen, Zhen-Lin; Mao, Peng-Zhi; Zeng, Wen-Feng; Chi, Hao; He, Si-Min

Improving mass spectrometry analysis of protein structures with arginine-selective chemical cross-linkers

NATURE COMMUNICATIONS

IF15.7

2019-09-02

OAAI

Jones, Alexander X.; Cao, Yong; Tangi, Yu-Liang; Wang, Jian-Hua; Ding, Yue-He; Tan, Hui; Chen, Zhen-Lin; Fang, Run-Qian; Yin, Jili; Chen, Rong-Chang; Zhu, Xing; She, Yang; Huang, Niu; Shao, Feng; Ye, Keqiong; Sun, Rui-Xiang; He, Si-Min; Lei, Xiaoguang; Dong, Meng-Qiu

A high-speed search engine pLink 2 with systematic evaluation for proteome-scale identification of cross-linked peptides 具有系统评估的高速搜索引擎pLink 2，用于蛋白质组规模的交联肽鉴定

NATURE COMMUNICATIONS

IF15.7

2019-07-30

311

OAAI

Chen, Zhen-Lin; Meng, Jia-Ming; Cao, Yong; Yin, Ji-Li; Fang, Run-Qian; Fan, Sheng-Bo; Liu, Chao; Zeng, Wen-Feng; Ding, Yue-He; Tan, Dan; Wu, Long; Zhou, Wen-Jing; Chi, Hao; Sun, Rui-Xiang; Dong, Meng-Qiu; He, Si-Min

MS/MS Spectrum Prediction for Modified Peptides Using pDeep2 Trained by Transfer Learning

ANALYTICAL CHEMISTRY

IF6.7

2019-06-25

PREAI

Zeng, Wen-Feng; Zhou, Xie-Xuan; Zhou, Wen-Jing; Chi, Hao; Zhan, Jianfeng; He, Si-Min

pValid: Validation Beyond the Target-Decoy Approach for Peptide Identification in Shotgun Proteomics

JOURNAL OF PROTEOME RESEARCH

IF3.6

2019-06-24

PREAI

Zhou, Wen-Jing; Yang, Hao; Zeng, Wen-Feng; Zhang, Kun; Chi, Hao; He, Si-Min

Precision De Novo Peptide Sequencing Using Mirror Proteases of Ac-LysargiNase and Trypsin for Large-scale Proteomics

MOLECULAR & CELLULAR PROTEOMICS

IF5.5

2019-04-01

OAAI

Yang, Hao; Li, Yan-Chang; Zhao, Ming-Zhi; Wu, Fei-Lin; Wang, Xi; Xiao, Wei-Di; Wang, Yi-Hao; Zhang, Jun-Ling; Wang, Fu-Qiang; Xu, Feng; Zengt, Wen-Feng; Overall, Christopher M.; He, Si-Min; Chi, Hao; Xu, Ping

Comprehensive identification of peptides in tandem mass spectra using an efficient open search engine

NATURE BIOTECHNOLOGY

IF41.7

2018-10-08

270

OAAI

Chi, Hao; Liu, Chao; Yang, Hao; Zeng, Wen-Feng; Wu, Long; Zhou, Wen-Jing; Wang, Rui-Min; Niu, Xiu-Nan; Ding, Yue-He; Zhang, Yao; Wang, Zhao-Wei; Chen, Zhen-Lin; Sun, Rui-Xiang; Liu, Tao; Tan, Guang-Ming; Dong, Meng-Qiu; Xu, Ping; Zhang, Pei-Heng; He, Si-Min

pDeep: Predicting MS/MS Spectra of Peptides with Deep Learning

ANALYTICAL CHEMISTRY

IF6.7

2017-11-21

173

PREAI

Zhou, Xie-Xuan; Zeng, Wen-Feng; Chi, Hao; Luo, Chunjie; Liu, Chao; Zhan, Jianfeng; He, Si-Min; Zhang, Zhifei

pSite: Amino Acid Confidence Evaluation for Quality Control of De Novo Peptide Sequencing and Modification Site Localization

JOURNAL OF PROTEOME RESEARCH

IF3.6

2017-11-21

PREAI

Yang, Hao; Chi, Hao; Zhou, Wen-Jing; Zeng, Wen-Feng; Liu, Chao; Wang, Rui-Min; Wang, Zhao-Wei; Niu, Xiu-Nan; Chen, Zhen-Lin; He, Si-Min

pGlyco 2.0 enables precision N-glycoproteomics with comprehensive quality control and one-step mass spectrometry for intact glycopeptide identification

NATURE COMMUNICATIONS

IF15.7

2017-09-05

263

OAAI

Liu, Ming-Qi; Zeng, Wen-Feng; Fang, Pan; Cao, Wei-Qian; Liu, Chao; Yan, Guo-Quan; Zhang, Yang; Peng, Chao; Wu, Jian-Qiang; Zhang, Xiao-Jin; Tu, Hui-Jun; Chi, Hao; Sun, Rui-Xiang; Cao, Yong; Dong, Meng-Qiu; Jiang, Bi-Yun; Huang, Jiang-Ming; Shen, Hua-Li; Wong, Catherine C. L.; He, Si-Min; Yang, Peng-Yuan

A rapid and easy protein N-terminal profiling strategy using (N-Succinimidyloxycarbonylmethyl)tris(2,4,6-trimethoxyphenyl) phosphonium bromide ( TMPP) labeling and StageTip

PROTEOMICS

IF3.9

2017-07-03

PREAI

Li, Yanchang; Wang, Zhiqiang; Zhou, Wenjing; Zhang, Kun; Ma, Jia; Wu, Feilin; Ji, Jianguo; Hong, Xuechuan; Deng, Zixin; He, Simin; Xu, Ping

Open-pNovo: De Novo Peptide Sequencing with Thousands of Protein Modifications

JOURNAL OF PROTEOME RESEARCH

IF3.6

2017-01-12

PREAI

Yang, Hao; Chi, Hao; Zhou, Wen-Jing; Zeng, Wen-Feng; He, Kun; Liu, Chao; Sun, Rui-Xiang; He, Si-Min