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The Rosetta All-Atom Energy Function for Macromolecular Modeling and Design (vol 13, pg 3031, 2017) Alford, Rebecca F.; Leaver-Fay, Andrew; Jeliazkov, Jeliazko R.; O'Meara, Matthew J.; DiMaio, Frank P.; Park, Hahnbeom; V. Shapovalov, Maxim; Renfrew, P. Douglas; Mulligan, Vikram K.; Kappel, Kalli; Labonte, Jason W.; Pacella, Michael S.; Bonneau, Richard; Bradley, Philip; Dunbrack, Roland L.; Das, Rhiju; Baker, David; Kuhlman, Brian; Kortemme, Tanja; Gray, Jeffrey J. 分享 收藏
Comparative Analysis of Sulfonium-π, Ammonium-π, and Sulfur-π Interactions and Relevance to SAM-Dependent Methyltransferases Albanese, Katherine, I; Leaver-Fay, Andrew; Treacy, Joseph W.; Park, Rodney; Houk, K. N.; Kuhlman, Brian; Waters, Marcey L. 分享 收藏
Ensuring scientific reproducibility in bio-macromolecular modeling via extensive, automated benchmarks Leman, Julia Koehler; Lyskov, Sergey; Lewis, Steven M.; Adolf-Bryfogle, Jared; Alford, Rebecca F.; Barlow, Kyle; Ben-Aharon, Ziv; Farrell, Daniel; Fell, Jason; Hansen, William A.; Harmalkar, Ameya; Jeliazkov, Jeliazko; Kuenze, Georg; Krys, Justyna D.; Ljubetic, Ajasja; Loshbaugh, Amanda L.; Maguire, Jack; Moretti, Rocco; Mulligan, Vikram Khipple; Nance, Morgan L.; Nguyen, Phuong T.; Conchuir, Shane O.; Burman, Shourya S. Roy; Samanta, Rituparna; Smith, Shannon T.; Teets, Frank; Tiemann, Johanna K. S.; Watkins, Andrew; Woods, Hope; Yachnin, Brahm J.; Bahl, Christopher D.; Bailey-Kellogg, Chris; Baker, David; Das, Rhiju; DiMaio, Frank; Khare, Sagar D.; Kortemme, Tanja; Labonte, Jason W.; Lindorff-Larsen, Kresten; Meiler, Jens; Schief, William; Schueler-Furman, Ora; Siegel, Justin B.; Stein, Amelie; Yarov-Yarovoy, Vladimir; Kuhlman, Brian; Leaver-Fay, Andrew; Gront, Dominik; Gray, Jeffrey J.; Bonneau, Richard 分享 收藏
Macromolecular modeling and design in Rosetta: recent methods and frameworks Rosetta中的大分子建模和设计: 最新方法和框架 Leman, Julia Koehler; Weitzner, Brian D.; Lewis, Steven M.; Adolf-Bryfogle, Jared; Alam, Nawsad; Alford, Rebecca F.; Aprahamian, Melanie; Baker, David; Barlow, Kyle A.; Barth, Patrick; Basanta, Benjamin; Bender, Brian J.; Blacklock, Kristin; Bonet, Jaume; Boyken, Scott E.; Bradley, Phil; Bystroff, Chris; Conway, Patrick; Cooper, Seth; Correia, Bruno E.; Coventry, Brian; Das, Rhiju; De Jong, Rene M.; DiMaio, Frank; Dsilva, Lorna; Dunbrack, Roland; Ford, Alexander S.; Frenz, Brandon; Fu, Darwin Y.; Geniesse, Caleb; Goldschmidt, Lukasz; Gowthaman, Ragul; Gray, Jeffrey J.; Gront, Dominik; Guffy, Sharon; Horowitz, Scott; Huang, Po-Ssu; Huber, Thomas; Jacobs, Tim M.; Jeliazkov, Jeliazko R.; Johnson, David K.; Kappel, Kalli; Karanicolas, John; Khakzad, Hamed; Khar, Karen R.; Khare, Sagar D.; Khatib, Firas; Khramushin, Alisa; King, Indigo C.; Kleffner, Robert; Koepnick, Brian; Kortemme, Tanja; Kuenze, Georg; Kuhlman, Brian; Kuroda, Daisuke; Labonte, Jason W.; Lai, Jason K.; Lapidoth, Gideon; Leaver-Fay, Andrew; Lindert, Steffen; Linsky, Thomas; London, Nir; Lubin, Joseph H.; Lyskov, Sergey; Maguire, Jack; Malmstroem, Lars; Marcos, Enrique; Marcu, Orly; Marze, Nicholas A.; Meiler, Jens; Moretti, Rocco; Mulligan, Vikram Khipple; Nerli, Santrupti; Norn, Christoffer; O'Conchuir, Shane; Ollikainen, Noah; Ovchinnikov, Sergey; Pacella, Michael S.; Pan, Xingjie; Park, Hahnbeom; Pavlovicz, Ryan E.; Pethe, Manasi; Pierce, Brian G.; Pilla, Kala Bharath; Raveh, Barak; Renfrew, P. Douglas; Burman, Shourya S. Roy; Rubenstein, Aliza; Sauer, Marion F.; Scheck, Andreas; Schief, William; Schueler-Furman, Ora; Sedan, Yuval; Sevy, Alexander M.; Sgourakis, Nikolaos G.; Shi, Lei; Siegel, Justin B.; Silva, Daniel-Adriano; Smith, Shannon; Song, Yifan; Stein, Amelie; Szegedy, Maria; Teets, Frank D.; Thyme, Summer B.; Wang, Ray Yu-Ruei; Watkins, Andrew; Zimmerman, Lior; Bonneau, Richard 分享 收藏
The Rosetta All-Atom Energy Function for Macromolecular Modeling and Design 用于大分子建模和设计的Rosetta全原子能量函数 Alford, Rebecca F.; Leaver-Fay, Andrew; Jeliazkov, Jeliazko R.; O'Meara, Matthew J.; DiMaio, Frank P.; Park, Hahnbeom; Shapovalov, Maxim V.; Renfrew, P. Douglas; Mulligan, Vikram K.; Kappel, Kalli; Labonte, Jason W.; Pacella, Michael S.; Bonneau, Richard; Bradley, Philip; Dunbrack, Roland L., Jr.; Das, Rhiju; Baker, David; Kuhlman, Brian; Kortemme, Tanja; Gray, Jeffrey J. 分享 收藏
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Combined Covalent-Electrostatic Model of Hydrogen Bonding Improves Structure Prediction with Rosetta O'Meara, Matthew J.; Leaver-Fay, Andrew; Tyka, Michael D.; Stein, Amelie; Houlihan, Kevin; DiMaio, Frank; Bradley, Philip; Kortemme, Tanja; Baker, David; Snoeyink, Jack; Kuhlman, Brian 分享 收藏
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Generation of bispecific IgG antibodies by structure-based design of an orthogonal Fab interface Lewis, Steven M.; Wu, Xiufeng; Pustilnik, Anna; Sereno, Arlene; Huang, Flora; Rick, Heather L.; Guntas, Gurkan; Leaver-Fay, Andrew; Smith, Eric M.; Ho, Carolyn; Hansen-Estruch, Christophe; Chamberlain, Aaron K.; Truhlar, Stephanie M.; Conner, Elaine M.; Atwell, Shane; Kuhlman, Brian; Demarest, Stephen J. 分享 收藏
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MolProbity: all-atom contacts and structure validation for proteins and nucleic acids MolProbity: 蛋白质和核酸的全原子接触和结构验证 Davis, Ian W.; Leaver-Fay, Andrew; Chen, Vincent B.; Block, Jeremy N.; Kapral, Gary J.; Wang, Xueyi; Murray, Laura W.; Arendall, W. Bryan, III; Snoeyink, Jack; Richardson, Jane S.; Richardson, David C. 分享 收藏
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