Daniel Berenberg

Department of Computer Science

10H指数

26论文数

1.6K被引数

收录论文 5

发表时间

Comparative genomics of the parasite Trichomonas vaginalis reveals genes involved in spillover from birds to humans 阴道毛滴虫的比较基因组学研究揭示了与鸟类向人类溢出传播相关的基因

Nature Communications

IF15.7

2025-07-24

OAAI

Steven A. Sullivan; Jordan C. Orosco; Francisco Callejas-Hernández; Frances Blow; Hayan Lee; T. Rhyker Ranallo-Benavidez; Andrew Peters; Shane R. Raidal; Yvette A. Girard; Christine K. Johnson; Krysta H. Rogers; Richard Gerhold; Hayley Mangelson; Ivan Liachko; Harsh Srivastava; Chris Chandler; Daniel Berenberg; Richard A. Bonneau; Po-Jung Huang; Yuan-Ming Yeh; Chi-Ching Lee; Hsuan Liu; Ting-Wen Chen; Petrus Tang; Cheng-Hsun Chiu; Michael C. Schatz; Jane M. Carlton

OpenFold: retraining AlphaFold2 yields new insights into its learning mechanisms and capacity for generalization OpenFold: 重新训练AlphaFold2对其学习机制和泛化能力产生了新的见解

NATURE METHODS

IF32.1

2024-05-14

OAAI

Ahdritz, Gustaf; Bouatta, Nazim; Floristean, Christina; Kadyan, Sachin; Xia, Qinghui; Gerecke, William; O'Donnell, Timothy J.; Berenberg, Daniel; Fisk, Ian; Zanichelli, Niccolo; Zhang, Bo; Nowaczynski, Arkadiusz; Wang, Bei; Stepniewska-Dziubinska, Marta M.; Zhang, Shang; Ojewole, Adegoke; Guney, Murat Efe; Biderman, Stella; Watkins, Andrew M.; Ra, Stephen; Lorenzo, Pablo Ribalta; Nivon, Lucas; Weitzner, Brian; Ban, Yih-En Andrew; Chen, Shiyang; Zhang, Minjia; Li, Conglong; Song, Shuaiwen Leon; He, Yuxiong; Sorger, Peter K.; Mostaque, Emad; Zhang, Zhao; Bonneau, Richard; AlQuraishi, Mohammed

Protein remote homology detection and structural alignment using deep learning 基于深度学习的蛋白质远程同源性检测和结构比对

NATURE BIOTECHNOLOGY

IF41.7

2023-09-07

OAAI

Hamamsy, Tymor; Morton, James T.; Blackwell, Robert; Berenberg, Daniel; Carriero, Nicholas; Gligorijevic, Vladimir; Strauss, Charlie E. M.; Leman, Julia Koehler; Cho, Kyunghyun; Bonneau, Richard

Sequence-structure-function relationships in the microbial protein universe

NATURE COMMUNICATIONS

IF15.7

2023-04-26

OAAI

Leman, Julia Koehler; Szczerbiak, Pawel; Renfrew, P. Douglas; Gligorijevic, Vladimir; Berenberg, Daniel; Vatanen, Tommi; Taylor, Bryn C.; Chandler, Chris; Janssen, Stefan; Pataki, Andras; Carriero, Nick; Fisk, Ian; Xavier, Ramnik J.; Knight, Rob; Bonneau, Richard; Kosciolek, Tomasz

Structure-based protein function prediction using graph convolutional networks 基于图卷积网络的基于结构的蛋白质功能预测

NATURE COMMUNICATIONS

IF15.7

2021-05-26

373

OAAI

Gligorijevic, Vladimir; Renfrew, P. Douglas; Kosciolek, Tomasz; Leman, Julia Koehler; Berenberg, Daniel; Vatanen, Tommi; Chandler, Chris; Taylor, Bryn C.; Fisk, Ian M.; Vlamakis, Hera; Xavier, Ramnik J.; Knight, Rob; Cho, Kyunghyun; Bonneau, Richard

研究方向