未登录SlideCNA: spatial copy number alteration detection from Slide-seq-like spatial transcriptomics dataSlideCNA: 从slide-seq-like空间转录组学数据中检测空间拷贝数改变
Zhang, Diane; Segerstolpe, Asa; Slyper, Michal; Waldman, Julia; Murray, Evan; Strasser, Robert; Watter, Jan; Cohen, Ofir; Ashenberg, Orr; Abravanel, Daniel; Jane-Valbuena, Judit; Mages, Simon; Lako, Ana; Helvie, Karla; Rozenblatt-Rosen, Orit; Rodig, Scott; Chen, Fei; Wagle, Nikhil; Regev, Aviv; Klughammer, Johanna .png)
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收藏A multi-modal single-cell and spatial expression map of metastatic breast cancer biopsies across clinicopathological features跨临床病理特征的转移性乳腺癌活检的多模态单细胞和空间表达图Klughammer, Johanna; Abravanel, Daniel L.; Segerstolpe, Asa; Blosser, Timothy R.; Goltsev, Yury; Cui, Yi; Goodwin, Daniel R.; Sinha, Anubhav; Ashenberg, Orr; Slyper, Michal; Vigneau, Sebastien; Jane-Valbuena, Judit; Alon, Shahar; Caraccio, Chiara; Chen, Judy; Cohen, Ofir; Cullen, Nicole; DelloStritto, Laura K.; Dionne, Danielle; Files, Janet; Frangieh, Allison; Helvie, Karla; Hughes, Melissa E.; Inga, Stephanie; Kanodia, Abhay; Lako, Ana; MacKichan, Colin; Mages, Simon; Moriel, Noa; Murray, Evan; Napolitano, Sara; Nguyen, Kyleen; Nitzan, Mor; Ortiz, Rebecca; Patel, Miraj; Pfaff, Kathleen L.; Porter, Caroline B. M.; Rotem, Asaf; Strauss, Sarah; Strasser, Robert; Thorner, Aaron R.; Turner, Madison; Wakiro, Isaac; Waldman, Julia; Wu, Jingyi; Zanudo, Jorge Gomez Tejeda; Zhang, Diane; Lin, Nancy U.; Tolaney, Sara M.; Winer, Eric P.; Boyden, Edward S.; Chen, Fei; Nolan, Garry P.; Rodig, Scott J.; Zhuang, Xiaowei; Rozenblatt-Rosen, Orit; Johnson, Bruce E.; Regev, Aviv; Wagle, Nikhil 分享 收藏 分享 收藏 分享 收藏 Comprehensive immunophenotyping of solid tumor-infiltrating immune cells reveals the expression characteristics of LAG-3 and its ligandsGarman, Bradley; Jiang, Can; Daouti, Sherif; Kumar, Sanah; Mehta, Priyanka; Jacques, Miye K.; Menard, Laurence; Manjarrez-Orduno, Nataly; Dolfi, Sonia; Mukherjee, Piali; Rai, Sharmila Chamling; Lako, Ana; Koenitzer, Jennifer D.; David, Justin M. 分享 收藏 Mitochondrial morphology controls fatty acid utilization by changing CPT1 sensitivity to malonyl-CoANgo, Jennifer; Choi, Dong Wook; Stanley, Illana A.; Stiles, Linsey; Molina, Anthony J. A.; Chen, Pei-Hsuan; Lako, Ana; Sung, Isabelle Chiao Han; Goswami, Rishov; Kim, Min-young; Miller, Nathanael; Baghdasarian, Siyouneh; Kim-Vasquez, Doyeon; Jones, Anthony E.; Roach, Brett; Gutierrez, Vincent; Erion, Karel; Divakaruni, Ajit S.; Liesa, Marc; Danial, Nika N.; Shirihai, Orian S. 分享 收藏 Use of Fluoro-[18F]-Deoxy-2-D-Glucose Positron Emission Tomography/Computed Tomography to Predict Immunotherapy Treatment Response in Patients With Squamous Cell Oral Cavity CancersShah, Hina; Wang, Yating; Cheng, Su-Chun; Gunasti, Lauren; Chen, Yu-Hui; Lako, Ana; Guenette, Jeffrey; Rodig, Scott; Jo, Vickie Y.; Uppaluri, Ravindra; Haddad, Robert; Schoenfeld, Jonathan D.; Jacene, Heather A. 分享 收藏 Spatio-molecular dissection of the breast cancer metastatic microenvironmentAbravanel, Daniel L.; Klughammer, Johanna; Blosser, Timothy; Goltsev, Yury; Jiang, Sizun; Bai, Yunjao; Murray, Evan; Alon, Shahar; Cui, Yi; Goodwin, Daniel R.; Sinha, Anubhav; Cohen, Ofir; Slyper, Michal; Ashenberg, Orr; Dionne, Danielle; Jane-Valbuena, Judit; Porter, Caroline BM.; Segerstolpe, Asa; Waldman, Julia; Vigneau, Sebastien; Helvie, Karla; Frangieh, Allison; DelloStritto, Laura; Patel, Miraj; We, Jingyi; Pfaff, Kathleen; Cullen, Nicole; Lako, Ana; Turner, Madison; Wakiro, Isaac; Napolitano, Sara; Kanodia, Abhay; Ortiz, Rebecca; MacKichan, Colin; Inga, Stephanie; Chen, Judy; Thorner, Aaron R.; Rotem, Asaf; Rodig, Scott; Chen, Fei; Boyden, Edward S.; Nolan, Garry P.; Zhuang, Xiaowei; Rozenblatt-Rosen, Orit; Johnson, Bruce E.; Regev, Aviv; Wagle, Nikhil 分享 收藏 Bevacizumab improves tumor infiltration of mature dendritic cells and effector T-cells in triple-negative breast cancer patientsBoucher, Yves; Kumar, Ashwin S.; Posada, Jessica M.; Gjini, Evisa; Pfaff, Kathleen; Lipschitz, Mikel; Lako, Ana; Duda, Dan G.; Rodig, Scott J.; Hodi, F. Stephen; Jain, Rakesh K. 分享 收藏 Intrinsic Immunogenicity of Small Cell Lung Carcinoma Revealed by Its Cellular PlasticityMahadevan, Navin R.; Knelson, Erik H.; Wolff, Jacquelyn O.; Vajdi, Amir; Saigi, Maria; Campisi, Marco; Hong, Deli; Thai, Tran C.; Piel, Brandon; Han, Saemi; Reinhold, Bruce B.; Duke-Cohan, Jonathan S.; Poitras, Michael J.; Taus, Luke J.; Lizotte, Patrick H.; Portell, Andrew; Quadros, Victor; Santucci, Alison D.; Murayama, Takahiko; Canadas, Israel; Kitajima, Shunsuke; Akitsu, Aoi; Fridrikh, Maya; Watanabe, Hideo; Reardon, Brendan; Gokhale, Prafulla C.; Paweletz, Cloud P.; Awad, Mark M.; Van Allen, Eliezer M.; Lako, Ana; Wang, Xi-Tao; Chen, Benjamin; Hong, Fangxin; Sholl, Lynette M.; Tolstorukov, Michael Y.; Pfaff, Kathleen; Janne, Pasi A.; Gjini, Evisa; Edwards, Robin; Rodig, Scott; Reinherz, Ellis L.; Oser, Matthew G.; Barbie, David A. 分享 收藏 Therapeutically Increasing MHC-I Expression Potentiates Immune Checkpoint Blockade治疗性增加mhc-i表达增强免疫检查点阻断Gu, Shengqing Stan; Zhang, Wubing; Wang, Xiaoqing; Jiang, Peng; Traugh, Nicole; Li, Ziyi; Meyer, Clifford; Stewig, Blair; Xie, Yingtian; Bu, Xia; Manos, Michael P.; Font-Tello, Alba; Gjini, Evisa; Lako, Ana; Lim, Klothilda; Conway, Jake; Tewari, Alok K.; Zeng, Zexian; Das Sahu, Avinash; Tokheim, Collin; Weirather, Jason L.; Fu, Jingxin; Zhang, Yi; Kroger, Benjamin; Liang, Jin Hua; Cejas, Paloma; Freeman, Gordon J.; Rodig, Scott; Long, Henry W.; Gewurz, Benjamin E.; Hodi, F. Stephen; Brown, Myles; Liu, X. Shirley 分享 收藏 INTEGRATIVE MOLECULAR PROFILING OF HIGH-GRADE PRIMARY PROSTATE CANCER IDENTIFIES PATIENTS WITH A BIOMARKER PROFILE THAT FAVORS THE COMBINATION OF STANDARD OF CARE (SOC) THERAPY WITH IMMUNOTHERAPYGjini, Evisa; Trillo-Tinoco, Jimena; Browne, Andrew; Powles, Ryan; Wang, Tai; Tauras, Christine; Lako, Ana; Ferrer-Luna, Ruben; Bleicher, Zoe; Consedine, Timothy; Zhou, Chensheng; Kelemen, Evan; Lewin, Anne; King, Catherine; Bhattacharya, Sumit; Bell-Temin, Harris; Dongre, Ashok; Nelson, David; Hatzis, Christos; Macisaac, Kenzie; Towfic, Fadi; Chen, Benjamin; Bowden, Michaela 分享 收藏 Inactivation of Fbxw7 Impairs dsRNA Sensing and Confers Resistance to PD-1 BlockadeGstalder, Cecile; Liu, David; Miao, Diana; Lutterbach, Bart; DeVine, Alexander L.; Lin, Chenyu; Shettigar, Megha; Pancholi, Priya; Buchbinder, Elizabeth, I; Carter, Scott L.; Manos, Michael P.; Rojas-Rudilla, Vanesa; Brennick, Ryan; Gjini, Evisa; Chen, Pei-Hsuan; Lako, Ana; Rodig, Scott; Yoon, Charles H.; Freeman, Gordon J.; Barbie, David A.; Hodi, F. Stephen; Miles, Wayne; Van Allen, Eliezer M.; Haq, Rizwan 分享 收藏 FiTAc-seq: fixed-tissue ChIP-seq for H3K27ac profiling and super-enhancer analysis of FFPE tissuesFont-Tello, Alba; Kesten, Nikolas; Xie, Yingtian; Taing, Len; Vareslija, Damir; Young, Leonie S.; Hamid, Anis A.; Van Allen, Eliezer M.; Sweeney, Christopher J.; Gjini, Evisa; Lako, Ana; Hodi, F. Steven; Bellmunt, Joaquim; Brown, Myles; Cejas, Paloma; Long, Henry W. 分享 收藏 Immunogenomic profiling determines responses to combined PARP and PD-1 inhibition in ovarian cancer (vol 11, pg 1459, 2020)Farkkila, Anniina; Gulhan, Doga C.; Casado, Julia; Jacobson, Connor A.; Huy Nguyen; Kochupurakkal, Bose; Maliga, Zoltan; Yapp, Clarence; Chen, Yu-An; Schapiro, Denis; Zhou, Yinghui; Graham, Julie R.; Dezube, Bruce J.; Munster, Pamela; Santagata, Sandro; Garcia, Elizabeth; Rodig, Scott; Lako, Ana; Chowdhury, Dipanjan; Shapiro, Geoffrey I.; Matulonis, Ursula A.; Park, Peter J.; Hautaniemi, Sampsa; Sorger, Peter K.; Swisher, Elizabeth M.; D'Andrea, Alan D.; Konstantinopoulos, Panagiotis A. 分享 收藏 Immunogenomic profiling determines responses to combined PARP and PD-1 inhibition in ovarian cancer免疫基因组学分析可预测卵巢癌患者对PARP抑制剂与PD-1抑制剂联合治疗的疗效反应Farkkila, Anniina; Gulhan, Doga C.; Casado, Julia; Jacobson, Connor A.; Nguyen, Huy; Kochupurakkal, Bose; Maliga, Zoltan; Yapp, Clarence; Chen, Yu-An; Schapiro, Denis; Zhou, Yinghui; Graham, Julie R.; Dezube, Bruce J.; Munster, Pamela; Santagata, Sandro; Garcia, Elizabeth; Rodig, Scott; Lako, Ana; Chowdhury, Dipanjan; Shapiro, Geoffrey, I; Matulonis, Ursula A.; Park, Peter J.; Hautaniemi, Sampsa; Sorger, Peter K.; Swisher, Elizabeth M.; D'Andrea, Alan D.; Konstantinopoulos, Panagiotis A. 分享 收藏 Subsets of exhausted CD8+ T cells differentially mediate tumor control and respond to checkpoint blockade (vol 20, pg 326, 2019)Miller, Brian C.; Sen, Debattama R.; Al Abosy, Rose; Bi, Kevin; Virkud, Yamini V.; LaFleur, Martin W.; Yates, Kathleen B.; Lako, Ana; Felt, Kristen; Naik, Girish S.; Manos, Michael; Gjini, Evisa; Kuchroo, Juhi R.; Ishizuka, Jeffrey J.; Collier, Jenna L.; Griffin, Gabriel K.; Maleri, Seth; Comstock, Dawn E.; Weiss, Sarah A.; Brown, Flavian D.; Panda, Arpit; Zimmer, Margaret D.; Manguso, Robert T.; Hodi, F. Stephen; Rodig, Scott J.; Sharpe, Arlene H.; Haining, W. Nicholas 分享 收藏 Functionally specialized subsets of exhausted CD8+T cells mediate tumor control and differentially respond to checkpoint blockadeMiller, Brian C.; Sen, Debattama R.; Al Abosy, Rose; Bi, Kevin; Virkud, Yamini V.; LaFleur, Martin W.; Yates, Kathleen B.; Lako, Ana; Felt, Kristen; Naik, Girish S.; Manos, Michael; Gjini, Evisa; Hodi, F. Stephen; Rodig, Scott J.; Sharpe, Arlene H.; Haining, W. Nicholas 分享 收藏 Subsets of exhausted CD8+ T cells differentially mediate tumor control and respond to checkpoint blockade耗竭的CD8 T细胞亚群差异介导肿瘤控制并响应检查点阻断Miller, Brian C.; Sen, Debattama R.; Al Abosy, Rose; Bi, Kevin; Virkud, Yamini V.; LaFleur, Martin W.; Yates, Kathleen B.; Lako, Ana; Felt, Kristen; Naik, Girish S.; Manos, Michael; Gjini, Evisa; Kuchroo, Juhi R.; Ishizuka, Jeffrey J.; Collier, Jenna L.; Griffin, Gabriel K.; Maleri, Seth; Comstock, Dawn E.; Weiss, Sarah A.; Brown, Flavian D.; Panda, Arpit; Zimmer, Margaret D.; Manguso, Robert T.; Hodi, F. Stephen; Rodig, Scott J.; Sharpe, Arlene H.; Haining, W. Nicholas 分享 收藏 MELK is an oncogenic kinase essential for mitotic progression in basal-like breast cancer cells (vol 3, e01763, 2014)Wang, Yubao; Li, Young-Mi; Baitsch, Lukas; Huang, Alan; Xiang, Yi; Tong, Haoxuan; Lako, Ana; Thanh Von; Choi, Christine; Lim, Elgene; Min, Junxia; Li, Li; Stegmeier, Frank; Schlegel, Robert; Eck, Michael J.; Gray, Nathanael S.; Mitchison, Timothy J.; Zhao, Jean J. 分享 收藏 
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