Rama Balakrishnan - Publications, H-index & Citations

Rama Balakrishnan

Stanford University

21H指数

47论文数

9.8K被引数

收录论文 22

发表时间

Maximizing data value for biopharma through FAIR and quality implementation: FAIR plus Q

DRUG DISCOVERY TODAY

IF7.5

2022-05-01

OAAI

Harrow, Ian; Balakrishnan, Rama; McGinty, Hande Kucuk; Plasterer, Tom; Romacker, Martin

Conference report: Biocuration 2021 Virtual Conference

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION

IF3.6

2022-04-09

OAAI

Quaglia, Federica; Balakrishnan, Rama; Bello, Susan M.; Vasilevsky, Nicole

Ontology mapping for semantically enabled applications

DRUG DISCOVERY TODAY

IF7.5

2019-10-01

OAAI

Harrow, Ian; Balakrishnan, Rama; Jimenez-Ruiz, Ernesto; Jupp, Simon; Lomax, Jane; Reed, Jane; Romacker, Martin; Senger, Christian; Splendiani, Andrea; Wilson, Jabe; Woollard, Peter

Active Interaction Mapping Reveals the Hierarchical Organization of Autophagy

MOLECULAR CELL

IF16.6

2017-02-01

OAAI

Kramer, Michael H.; Farre, Jean-Claude; Mitra, Koyel; Yu, Michael Ku; Ono, Keiichiro; Demchak, Barry; Licon, Katherine; Flagg, Mitchell; Balakrishnan, Rama; Cherry, J. Michael; Subramani, Suresh; Ideker, Trey

Integration of new alternative reference strain genome sequences into the Saccharomyces genome database

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION

IF3.6

2016-06-01

OAAI

Song, Giltae; Balakrishnan, Rama; Binkley, Gail; Costanzo, Maria C.; Dalusag, Kyla; Demeter, Janos; Engel, Stacia; Hellerstedt, Sage T.; Karra, Kalpana; Hitz, Benjamin C.; Nash, Robert S.; Paskov, Kelley; Sheppard, Travis; Skrzypek, Marek; Weng, Shuai; Wong, Edith; Cherry, J. Michael

Guidelines for the functional annotation of microRNAs using the Gene Ontology

RNA

IF5

2016-02-25

OAAI

Huntley, Rachael P.; Sitnikov, Dmitry; Orlic-Milacic, Marija; Balakrishnan, Rama; D'Eustachio, Peter; Gillespie, Marc E.; Howe, Doug; Kalea, Anastasia Z.; Maegdefessel, Lars; Osumi-Sutherland, David; Petri, Victoria; Smith, Jennifer R.; Van Auken, Kimberly; Wood, Valerie; Zampetaki, Anna; Mayr, Manuel; Lovering, Ruth C.

The Saccharomyces Genome Database Variant Viewer

NUCLEIC ACIDS RESEARCH

IF13.1

2015-11-17

OAAI

Sheppard, Travis K.; Hitz, Benjamin C.; Engel, Stacia R.; Song, Giltae; Balakrishnan, Rama; Binkley, Gail; Costanzo, Maria C.; Dalusag, Kyla S.; Demeter, Janos; Hellerstedt, Sage T.; Karra, Kalpana; Nash, Robert S.; Paskov, Kelley M.; Skrzypek, Marek S.; Weng, Shuai; Wong, Edith D.; Cherry, J. Michael

Standardized description of scientific evidence using the Evidence Ontology (ECO)

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION

IF3.6

2014-07-22

OAAI

Chibucos, Marcus C.; Mungall, Christopher J.; Balakrishnan, Rama; Christie, Karen R.; Huntley, Rachael P.; White, Owen; Blake, Judith A.; Lewis, Suzanna E.; Giglio, Michelle

InterMOD: integrated data and tools for the unification of model organism research (vol 3, 1802, 2013)

SCIENTIFIC REPORTS

IF3.9

2013-11-22

OAAI

Sullivan, Julie; Karra, Kalpana; Moxon, Sierra A. T.; Vallejos, Andrew; Motenko, Howie; Wong, J. D.; Aleksic, Jelena; Balakrishnan, Rama; Binkley, Gail; Harris, Todd; Hitz, Benjamin; Jayaraman, Pushkala; Lyne, Rachel; Neuhauser, Steven; Pich, Christian; Smith, Richard N.; Quang Trinh; Cherry, J. Michael; Richardson, Joel; Stein, Lincoln; Twigger, Simon; Westerfield, Monte; Worthey, Elizabeth; Micklem, Gos

Gene Ontology annotation of sequence-specific DNA binding transcription factors: setting the stage for a large-scale curation effort

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION

IF3.6

2013-08-27

OAAI

Tripathi, Sushil; Christie, Karen R.; Balakrishnan, Rama; Huntley, Rachael; Hill, David P.; Thommesen, Liv; Blake, Judith A.; Kuiper, Martin; Laegreid, Astrid

A guide to best practices for Gene Ontology (GO) manual annotation

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION

IF3.6

2013-07-09

114

OAAI

Balakrishnan, Rama; Harris, Midori A.; Huntley, Rachael; Van Auken, Kimberly; Cherry, J. Michael

InterMOD: integrated data and tools for the unification of model organism research

SCIENTIFIC REPORTS

IF3.9

2013-05-08

OAAI

A gene ontology inferred from molecular networks

NATURE BIOTECHNOLOGY

IF41.7

2012-12-16

167

OAAI

Dutkowski, Janusz; Kramer, Michael; Surma, Michal A.; Balakrishnan, Rama; Cherry, J. Michael; Krogan, Nevan J.; Ideker, Trey

CvManGO, a method for leveraging computational predictions to improve literature-based Gene Ontology annotations

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION

IF3.6

2012-02-13

OAAI

Park, Julie; Costanzo, Maria C.; Balakrishnan, Rama; Cherry, J. Michael; Hong, Eurie L.

YeastMine-an integrated data warehouse for Saccharomyces cerevisiae data as a multipurpose tool-kit

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION

IF3.6

2012-02-13

224

OAAI

Balakrishnan, Rama; Park, Julie; Karra, Kalpana; Hitz, Benjamin C.; Binkley, Gail; Hong, Eurie L.; Sullivan, Julie; Micklem, Gos; Cherry, J. Michael

Saccharomyces Genome Database: the genomics resource of budding yeast

NUCLEIC ACIDS RESEARCH

IF13.1

2011-11-21

1.5K

OAAI

Cherry, J. Michael; Hong, Eurie L.; Amundsen, Craig; Balakrishnan, Rama; Binkley, Gail; Chan, Esther T.; Christie, Karen R.; Costanzo, Maria C.; Dwight, Selina S.; Engel, Stacia R.; Fisk, Dianna G.; Hirschman, Jodi E.; Hitz, Benjamin C.; Karra, Kalpana; Krieger, Cynthia J.; Miyasato, Stuart R.; Nash, Rob S.; Park, Julie; Skrzypek, Marek S.; Simison, Matt; Weng, Shuai; Wong, Edith D.

Using computational predictions to improve literature-based Gene Ontology annotations: a feasibility study

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION

IF3.6

2011-03-15

OAAI

Costanzo, Maria C.; Park, Julie; Balakrishnan, Rama; Cherry, J. Michael; Hong, Eurie L.

Saccharomyces Genome Database provides mutant phenotype data

NUCLEIC ACIDS RESEARCH

IF13.1

2009-11-11

106

OAAI

Engel, Stacia R.; Balakrishnan, Rama; Binkley, Gail; Christie, Karen R.; Costanzo, Maria C.; Dwight, Selina S.; Fisk, Dianna G.; Hirschman, Jodi E.; Hitz, Benjamin C.; Hong, Eurie L.; Krieger, Cynthia J.; Livstone, Michael S.; Miyasato, Stuart R.; Nash, Robert; Oughtred, Rose; Park, Julie; Skrzypek, Marek S.; Weng, Shuai; Wong, Edith D.; Dolinski, Kara; Botstein, David; Cherry, J. Michael

Gene Ontology annotations at SGD: new data sources and annotation methods

NUCLEIC ACIDS RESEARCH

IF13.1

2007-12-23

230

OAAI

Hong, Eurie L.; Balakrishnan, Rama; Dong, Qing; Christie, Karen R.; Park, Julie; Binkley, Gail; Costanzo, Maria C.; Dwight, Selina S.; Engel, Stacia R.; Fisk, Dianna G.; Hirschman, Jodi E.; Hitz, Benjamin C.; Krieger, Cynthia J.; Livstone, Michael S.; Miyasato, Stuart R.; Nash, Robert S.; Oughtred, Rose; Skrzypek, Marek S.; Weng, Shuai; Wong, Edith D.; Zhu, Kathy K.; Dolinski, Kara; Botstein, David; Cherry, J. Michael

Expanded protein information at SGD: new pages and proteome browser

NUCLEIC ACIDS RESEARCH

IF13.1

2007-01-03

OAAI

Nash, Robert; Weng, Shuai; Hitz, Ben; Balakrishnan, Rama; Christie, Karen R.; Costanzo, Maria C.; Dwight, Selina S.; Engel, Stacia R.; Fisk, Dianna G.; Hirschman, Jodi E.; Hong, Eurie L.; Livstone, Michael S.; Oughtred, Rose; Park, Julie; Skrzypek, Marek; Theesfeld, Chandra L.; Binkley, Gail; Dong, Qing; Lane, Christopher; Miyasato, Stuart; Sethuraman, Anand; Schroeder, Mark; Dolinski, Kara; Botstein, David; Cherry, J. Michael

研究方向