Sergey Shmakov - Publications, H-index & Citations

Sergey Shmakov

Lomonosov Moscow State University

28H指数

64论文数

10.0K被引数

收录论文 30

发表时间

3D Genome Engineering Using CRISPR/dCas Systems 利用CRISPR/dCas系统进行三维基因组工程

International Journal of Molecular Sciences

IF4.9

2026-09-12

OAAI

Naida Yu. Mamaeva; Valeriy A. Yakovlev; Nikolay V. Kristovskiy; Pavel G. Feskin; Renat S. Vinnikov; Pavel D. Oleinikov; Sergey A. Shmakov; Konstantin V. Shaitan; Mikhail P. Kirpichnikov; Alexey K. Shaytan

An updated evolutionary classification of CRISPR–Cas systems including rare variants 包含稀有变体的CRISPR–Cas系统更新后的进化分类

Nature Microbiology

IF19.4

2025-11-06

OAAI

Kira S. Makarova; Sergey A. Shmakov; Yuri I. Wolf; Pascal Mutz; Han Altae-Tran; Chase L. Beisel; Stan J. J. Brouns; Emmanuelle Charpentier; David Cheng; Jennifer Doudna; Daniel H. Haft; Philippe Horvath; Sylvain Moineau; Francisco J. M. Mojica; Patrick Pausch; Rafael Pinilla-Redondo; Shiraz A. Shah; Virginijus Siksnys; Michael P. Terns; Jesse Tordoff; Česlovas Venclovas; Malcolm F. White; Alexander F. Yakunin; Feng Zhang; Roger A. Garrett; Rolf Backofen; John van der Oost; Rodolphe Barrangou; Eugene V. Koonin

Reprogrammable RNA-targeting CRISPR systems evolved from RNA toxin-antitoxins 可编程RNA靶向CRISPR系统由RNA毒素-抗毒素系统进化而来。

CELL

IF42.5

2025-02-01

OAAI

Zilberzwige-Tal, Shai; Altae-Tran, Han; Kannan, Soumya; Wilkinson, Max E.; Vo, Samuel Chau-Duy-Tam; Strebinger, Daniel; Edmonds, KeHuan K.; Yao, Chun-Chen Jerry; Mears, Kepler S.; Shmakov, Sergey A.; Makarova, Kira S.; Macrae, Rhiannon K.; Koonin, Eugene, V; Zhang, Feng

Diversity, evolution, and classification of the RNA- guided nucleases TnpB and Cas12 RNA引导的核酸酶TnpB和Cas12的多样性，进化和分类

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2023-11-20

OAAI

Tran, Han Altae-; Shmakov, Sergey A.; Makarova, Kira S.; Wolf, Yuri I.; Kannan, Soumya; Zhang, Feng; V. Koonin, Eugene

Widespread CRISPR-derived RNA regulatory elements in CRISPR-Cas systems

NUCLEIC ACIDS RESEARCH

IF13.1

2023-06-07

OAAI

Shmakov, Sergey A.; Barth, Zachary K.; Makarova, Kira S.; Wolf, Yuri, I; Brover, Vyacheslav; Peters, Joseph E.; Koonin, Eugene, V

Cargo Genes of Tn7-Like Transposons Comprise an Enormous Diversity of Defense Systems, Mobile Genetic Elements, and Antibiotic Resistance Genes (vol 12, e02938-21, 2021)

MBIO

IF4.7

2022-04-26

OAAI

Benler, Sean; Faure, Guilhem; Tran, Han-Altae; Shmakov, Sergey; Zhang, Feng; Koonin, Eugene

Evolution of Type IV CRISPR-Cas Systems: Insights from CRISPR Loci in Integrative Conjugative Elements of Acidithiobacillia

CRISPR JOURNAL

IF4

2021-10-01

OAAI

Moya-Beltran, Ana; Makarova, Kira S.; Acuna, Lillian G.; Wolf, Yuri, I; Covarrubias, Paulo C.; Shmakov, Sergey A.; Silva, Cristian; Tolstoy, Igor; Johnson, D. Barrie; Koonin, Eugene, V; Quatrini, Raquel

Thousands of previously unknown phages discovered in whole-community human gut metagenomes

MICROBIOME

IF12.7

2021-03-29

107

OAAI

Benler, Sean; Yutin, Natalya; Antipov, Dmitry; Rayko, Mikhail; Shmakov, Sergey; Gussow, Ayal B.; Pevzner, Pavel; Koonin, Eugene, V

CRISPRidentify: identification of CRISPR arrays using machine learning approach

NUCLEIC ACIDS RESEARCH

IF13.1

2020-12-08

OAAI

Mitrofanov, Alexander; Alkhnbashi, Omer S.; Shmakov, Sergey A.; Makarova, Kira S.; Koonin, Eugene, V; Backofen, Rolf

CRISPR Arrays Away from cas Genes

CRISPR JOURNAL

IF4

2020-12-01

OAAI

Shmakov, Sergey A.; Utkina, Irina; Wolf, Yuri, I; Makarova, Kira S.; Severinov, Konstantin, V; Koonin, Eugene, V

PpCas9 from Pasteurella pneumotropica - a compact Type II-C Cas9 ortholog active in human cells

NUCLEIC ACIDS RESEARCH

IF13.1

2020-11-05

OAAI

Fedorova, Iana; Vasileva, Aleksandra; Selkova, Polina; Abramova, Marina; Arseniev, Anatolii; Pobegalov, Georgii; Kazalov, Maksim; Musharova, Olga; Goryanin, Ignatiy; Artamonova, Daria; Zyubko, Tatyana; Shmakov, Sergey; Artamonova, Tatyana; Khodorkovskii, Mikhail; Severinov, Konstantin

Machine-learning approach expands the repertoire of anti-CRISPR protein families

NATURE COMMUNICATIONS

IF15.7

2020-07-29

OAAI

Gussow, Ayal B.; Park, Allyson E.; Borges, Adair L.; Shmakov, Sergey A.; Makarova, Kira S.; Wolf, Yuri I.; Bondy-Denomy, Joseph; Koonin, Eugene V.

Mapping CRISPR spaceromes reveals vast host-specific viromes of prokaryotes

COMMUNICATIONS BIOLOGY

IF5.1

2020-06-22

OAAI

Shmakov, Sergey A.; Wolf, Yuri I.; Savitskaya, Ekaterina; Severinov, Konstantin V.; Koonin, Eugene V.

Unprecedented Diversity of Unique CRISPR-Cas-Related Systems and Cas1 Homologs in Asgard Archaea

CRISPR JOURNAL

IF4

2020-06-01

OAAI

Makarova, Kira S.; Wolf, Yuri, I; Shmakov, Sergey A.; Liu, Yang; Li, Meng; Koonin, Eugene, V

DNA targeting by Clostridium cellulolyticum CRISPR-Cas9 Type II-C system

NUCLEIC ACIDS RESEARCH

IF13.1

2020-01-16

OAAI

Fedorova, Iana; Arseniev, Anatolii; Selkova, Polina; Pobegalov, Georgii; Goryanin, Ignatiy; Vasileva, Aleksandra; Musharova, Olga; Abramova, Marina; Kazalov, Maksim; Zyubko, Tatyana; Artamonova, Tatyana; Artamonova, Daria; Shmakov, Sergey; Khodorkovskii, Mikhail; Severinov, Konstantin

Evolutionary classification of CRISPR-Cas systems: a burst of class 2 and derived variants Crispr-cas系统的进化分类: 2类和衍生变体的爆发

NATURE REVIEWS MICROBIOLOGY

IF103.3

2019-12-19

1.6K

OAAI

Makarova, Kira S.; Wolf, Yuri, I; Iranzo, Jaime; Shmakov, Sergey A.; Alkhnbashi, Omer S.; Brouns, Stan J. J.; Charpentier, Emmanuelle; Cheng, David; Haft, Daniel H.; Horvath, Philippe; Moineau, Sylvain; Mojica, Francisco J. M.; Scott, David; Shah, Shiraz A.; Siksnys, Virginijus; Terns, Michael P.; Venclovas, Ceslovas; White, Malcolm F.; Yakunin, Alexander F.; Yan, Winston; Zhang, Feng; Garrett, Roger A.; Backofen, Rolf; van der Oost, John; Barrangou, Rodolphe; Koonin, Eugene, V

Systematic prediction of functionally linked genes in bacterial and archaeal genomes

NATURE PROTOCOLS

IF16

2019-09-13

OAAI

Shmakov, Sergey A.; Faure, Guilhem; Makarova, Kira S.; Wolf, Yuri, I; Severinov, Konstantin, V; Koonin, Eugene, V

CRISPR-Cas in mobile genetic elements: counter-defence and beyond

NATURE REVIEWS MICROBIOLOGY

IF103.3

2019-06-05

195

OAAI