Pavel A. Pevzner - Publications, H-index & Citations

Pavel A. Pevzner

University of California San Diego

102H指数

454论文数

9.4W被引数

收录论文 130

发表时间

Synthetic lethality and the minimal genome size problem 合成致死率和最小基因组大小问题

MSPHERE

IF3.1

2024-07-30

OAAI

Rahiminejad, Sara; De Sanctis, Bianca; Pevzner, Pavel; Mushegian, Arcady

UniAligner: a parameter-free framework for fast sequence alignment

NATURE METHODS

IF32.1

2023-08-14

PREAI

Bzikadze, Andrey V.; Pevzner, Pavel A.

Analyzing rare mutations in metagenomes assembled using long and accurate reads

GENOME RESEARCH

IF5.5

2022-11-23

OAAI

Fedarko, Marcus W.; Kolmogorov, Mikhail; Pevzner, Pavel A.

New Views of Old Proteins: Clarifying the Enigmatic Proteome

MOLECULAR & CELLULAR PROTEOMICS

IF5.5

2022-07-01

OAAI

Burnum-Johnson, Kristin E.; Conrads, Thomas P.; Drake, Richard R.; Herr, Amy E.; Iyengar, Ravi; Kelly, Ryan T.; Lundberg, Emma; MacCoss, Michael J.; Naba, Alexandra; Nolan, Garry P.; Pevzner, Pavel A.; Rodland, Karin D.; Sechi, Salvatore; Slavov, Nikolai; Spraggins, Jeffrey M.; Van Eyk, Jennifer E.; Vidal, Marc; Vogel, Christine; Walt, David R.; Kelleher, Neil L.

Gene prediction in the immunoglobulin loci

GENOME RESEARCH

IF5.5

2022-05-11

OAAI

Sirupurapu, Vikram; Safonova, Yana; Pevzner, Pavel A.

Automated annotation of human centromeres with HORmon

GENOME RESEARCH

IF5.5

2022-05-11

OAAI

Kunyavskaya, Olga; Dvorkina, Tatiana; Bzikadze, Andrey, V; Alexandrov, Ivan A.; Pevzner, Pavel A.

Variations in antibody repertoires correlate with vaccine responses

GENOME RESEARCH

IF5.5

2022-03-31

OAAI

Safonova, Yana; Shin, Sung Bong; Kramer, Luke; Reecy, James; Watson, Corey T.; Smith, Timothy P. L.; Pevzner, Pavel A.

Multiplex de Bruijn graphs enable genome assembly from long, high-fidelity reads

NATURE BIOTECHNOLOGY

IF41.7

2022-02-28

OAAI

Bankevich, Anton; Bzikadze, Andrey V.; Kolmogorov, Mikhail; Antipov, Dmitry; Pevzner, Pavel A.

viralFlye: assembling viruses and identifying their hosts from long-read metagenomics data viralFlye: 从长读宏基因组学数据中组装病毒并识别其宿主

GENOME BIOLOGY

IF9.4

2022-02-21

OAAI

Antipov, Dmitry; Rayko, Mikhail; Kolmogorov, Mikhail; Pevzner, Pavel A.

Generating lineage-resolved, complete metagenome-assembled genomes from complex microbial communities 从复杂的微生物群落中生成谱系解析的完整宏基因组组装的基因组

NATURE BIOTECHNOLOGY

IF41.7

2022-01-03

112

PREAI

Bickhart, Derek M.; Kolmogorov, Mikhail; Tseng, Elizabeth; Portik, Daniel M.; Korobeynikov, Anton; Tolstoganov, Ivan; Uritskiy, Gherman; Liachko, Ivan; Sullivan, Shawn T.; Shin, Sung Bong; Zorea, Alvah; Andreu, Victoria Pascal; Panke-Buisse, Kevin; Medema, Marnix H.; Mizrahi, Itzhak; Pevzner, Pavel A.; Smith, Timothy P. L.

Integrating genomics and metabolomics for scalable non-ribosomal peptide discovery (vol 12, 3225, 2021)

NATURE COMMUNICATIONS

IF15.7

2021-07-08

OAAI

Behsaz, Bahar; Bode, Edna; Gurevich, Alexey; Shi, Yan-Ni; Grundmann, Florian; Acharya, Deepa; Caraballo-Rodriguez, Andres Mauricio; Bouslimani, Amina; Panitchpakdi, Morgan; Linck, Annabell; Guan, Changhui; Oh, Julia; Dorrestein, Pieter C.; Bode, Helge B.; Pevzner, Pavel A.; Mohimani, Hosein

ORFograph: search for novel insecticidal protein genes in genomic and metagenomic assembly graphs

MICROBIOME

IF12.7

2021-06-28

OAAI

Dvorkina, Tatiana; Bankevich, Anton; Sorokin, Alexei; Yang, Fan; Adu-Oppong, Boahemaa; Williams, Ryan; Turner, Keith; Pevzner, Pavel A.

Integrating genomics and metabolomics for scalable non-ribosomal peptide discovery 整合基因组学和代谢组学以发现可扩展的非核糖体肽

NATURE COMMUNICATIONS

IF15.7

2021-05-28

OAAI

Ultralow-input single-tube linked-read library method enables short-read second-generation sequencing systems to routinely generate highly accurate and economical longrange sequencing information (vol 30, pg 898, 2020)

GENOME RESEARCH

IF5.5

2021-05-03

OAAI

Chen, Zhoutao; Pham, Long; Wu, Tsai-Chin; Mo, Guoya; Xia, Yu; Chang, Peter L.; Porter, Devin; Phan, Tan; Che, Huu; Tran, Hao; Bansal, Vikas; Shaffer, Justin; Belda-Ferre, Pedro; Humphrey, Greg; Knight, Rob; Pevzner, Pavel; Pham, Son; Wang, Yong; Lei, Ming

Thousands of previously unknown phages discovered in whole-community human gut metagenomes

MICROBIOME

IF12.7

2021-03-29

107

OAAI

Benler, Sean; Yutin, Natalya; Antipov, Dmitry; Rayko, Mikhail; Shmakov, Sergey; Gussow, Ayal B.; Pevzner, Pavel; Koonin, Eugene, V

Analysis of metagenome-assembled viral genomes from the human gut reveals diverse putative CrAss-like phages with unique genomic features

NATURE COMMUNICATIONS

IF15.7

2021-02-16

OAAI

Yutin, Natalya; Benler, Sean; Shmakov, Sergei A.; Wolf, Yuri, I; Tolstoy, Igor; Rayko, Mike; Antipov, Dmitry; Pevzner, Pavel A.; Koonin, Eugene, V

A Multi-Omics Characterization of the Natural Product Potential of Tropical Filamentous Marine Cyanobacteria

MARINE DRUGS

IF5.4

2021-01-06

OAAI

Leao, Tiago; Wang, Mingxun; Moss, Nathan; da Silva, Ricardo; Sanders, Jon; Nurk, Sergey; Gurevich, Alexey; Humphrey, Gregory; Reher, Raphael; Zhu, Qiyun; Belda-Ferre, Pedro; Glukhov, Evgenia; Whitner, Syrena; Alexander, Kelsey L.; Rex, Robert; Pevzner, Pavel; Dorrestein, Pieter C.; Knight, Rob; Bandeira, Nuno; Gerwick, William H.; Gerwick, Lena

metaFlye: scalable long-read metagenome assembly using repeat graphs metaFlye: 使用重复图的可扩展长读宏基因组组装

NATURE METHODS

IF32.1

2020-10-05

442

OAAI

Kolmogorov, Mikhail; Bickhart, Derek M.; Behsaz, Bahar; Gurevich, Alexey; Rayko, Mikhail; Shin, Sung Bong; Kuhn, Kristen; Yuan, Jeffrey; Polevikov, Evgeny; Smith, Timothy P. L.; Pevzner, Pavel A.

V(DD)J recombination is an important and evolutionarily conserved mechanism for generating antibodies with unusually long CDR3s

GENOME RESEARCH

IF5.5

2020-09-18

OAAI

Safonova, Yana; Pevzner, Pavel A.

Automated assembly of centromeres from ultra-long error-prone reads

NATURE BIOTECHNOLOGY

IF41.7

2020-07-14

OAAI

Bzikadze, Andrey, V; Pevzner, Pavel A.

研究方向