Patrick B. F. O’Connor - Publications, H-index & Citations

Patrick B. F. O’Connor

University College Cork

15H指数

32论文数

1.7K被引数

收录论文 17

发表时间

Ribosome profiling reveals downregulation of UMP biosynthesis as the major early response to phage infection 核糖体分析揭示了UMP生物合成的下调是对噬菌体感染的主要早期反应

MICROBIOLOGY SPECTRUM

IF3.8

2024-04-02

OAAI

O'Connor, Patrick B. F.; Mahony, Jennifer; Casey, Eoghan; Baranov, Pavel V.; van Sinderen, Douwe; Yordanova, Martina M.

Streptomyces rare codon UUA: from features associated with 2 adpA related locations to candidate phage regulatory translational bypassing

RNA BIOLOGY

IF3.4

2023-11-15

OAAI

Antonov, Ivan V.; O'Loughlin, Sinead; Gorohovski, Alessandro N.; O'Connor, Patrick B. F.; Baranov, Pavel V.; Atkins, John F.

Evaluating data integrity in ribosome footprinting datasets through modelled polysome profiles 通过建模的多核糖体谱评估核糖体足迹数据集中的数据完整性

NUCLEIC ACIDS RESEARCH

IF13.1

2022-08-18

OAAI

Hedayioglu, Fabio; Mead, Emma J.; O'Connor, Patrick B. F.; Skiotys, Matas; Sansom, Owen J.; Mallucci, Giovanna R.; Willis, Anne E.; Baranov, Pavel, V; Smales, C. Mark; von der Haar, Tobias

Unusually efficient CUG initiation of an overlapping reading frame in POLG mRNA yields novel protein POLGARF

PROCEEDINGS OF THE NATIONAL ACADEMY OF SCIENCES OF THE UNITED STATES OF AMERICA

IF9.1

2020-09-21

OAAI

Loughran, Gary; Zhdanov, Alexander V.; Mikhaylova, Maria S.; Rozov, Fedor N.; Datskevich, Petr N.; Kovalchuk, Sergey I.; Serebryakova, Marina V.; Kiniry, Stephen J.; Michel, Audrey M.; O'Connor, Patrick B. F.; Papkovsky, Dmitri B.; Atkins, John F.; Baranov, Pavel V.; Shatsky, Ivan N.; Andreev, Dmitry E.

Translation initiation downstream from annotated start codons in human mRNAs coevolves with the Kozak context

GENOME RESEARCH

IF5.5

2020-07-15

OAAI

Benitez-Cantos, Maria S.; Yordanova, Martina M.; O'Connor, Patrick B. F.; Zhdanov, Alexander V.; Kovalchuk, Sergey I.; Papkovsky, Dmitri B.; Andreev, Dmitry E.; Baranov, Pavel V.

In Vivo RNAi-Mediated eIF3m Knockdown Affects Ribosome Biogenesis and Transcription but Has Limited Impact on mRNA-Specific Translation

MOLECULAR THERAPY-NUCLEIC ACIDS

IF0

2020-03-01

OAAI

Smekalova, Elena M.; Gerashchenko, Maxim, V; O'Connor, Patrick B. F.; Whittaker, Charles A.; Kauffman, Kevin J.; Fefilova, Anna S.; Zatsepin, Timofei S.; Bogorad, Roman L.; Baranov, Pavel, V; Langer, Robert; Gladyshev, Vadim N.; Anderson, Daniel G.; Koteliansky, Victor

Rocaglates Induce Gain-of-Function Alterations to eIF4A and eIF4F

CELL REPORTS

IF6.9

2020-02-01

OAAI

Chu, Jennifer; Zhang, Wenhan; Cencic, Regina; O'Connor, Patrick B. F.; Robert, Francis; Devine, William G.; Selznick, Asher; Henkel, Thomas; Merrick, William C.; Brown, Lauren E.; Baranov, Pavel V.; Porco, John A., Jr.; Pelletier, Jerry

Trips-Viz: a transcriptome browser for exploring Ribo-Seq data

NUCLEIC ACIDS RESEARCH

IF13.1

2018-09-20

OAAI

Kiniry, Stephen J.; O'Connor, Patrick B. F.; Michel, Audrey M.; Baranov, Pavel V.

Itm2a silencing rescues lamin A mediated inhibition of 3T3-L1 adipocyte differentiation

ADIPOCYTE

IF3.1

2017-09-05

OAAI

Davies, Stephanie J.; Ryan, James; O'Connor, Patrick B. F.; Kenny, Elaine; Morris, Derek; Baranov, Pavel V.; O'Connor, Rosemary; McCarthy, Tommie V.

GWIPS-viz: 2018 update

NUCLEIC ACIDS RESEARCH

IF13.1

2017-09-05

OAAI

Michel, Audrey M.; Kiniry, Stephen J.; O'Connor, Patrick B. F.; Mullan, James P.; Baranov, Pavel V.

Insights into the mechanisms of eukaryotic translation gained with ribosome profiling

NUCLEIC ACIDS RESEARCH

IF13.1

2016-12-06

123

OAAI

Andreev, Dmitry E.; O'Connor, Patrick B. F.; Loughran, Gary; Dmitriev, Sergey E.; Baranov, Pavel V.; Shatsky, Ivan N.

Comparative survey of the relative impact of mRNA features on local ribosome profiling read density

NATURE COMMUNICATIONS

IF15.7

2016-10-04

OAAI

O'Connor, Patrick B. F.; Andreev, Dmitry E.; Baranov, Pavel V.

RiboGalaxy: A browser based platform for the alignment, analysis and visualization of ribosome profiling data RiboGalaxy: 一个基于浏览器的平台，用于比对，分析和可视化核糖体分析数据

RNA BIOLOGY

IF3.4

2016-03-01

OAAI

Michel, Audrey M.; Mullan, James P. A.; Velayudhan, Vimalkumar; O'Connor, Patrick B. F.; Donohue, Claire A.; Baranov, Pavel V.

The effect of heterogeneous Transcription Start Sites (TSS) on the translatome: implications for the mammalian cellular phenotype

BMC GENOMICS

IF3.7

2015-11-21

OAAI

Dieudonne, Francois-Xavier; O'Connor, Patrick B. F.; Gubler-Jaquier, Pascale; Yasrebi, Haleh; Conne, Beatrice; Nikolaev, Sergey; Antonarakis, Stylianos; Baranov, Pavel V.; Curran, Joseph

Oxygen and glucose deprivation induces widespread alterations in mRNA translation within 20 minutes

GENOME BIOLOGY

IF9.4

2015-05-06

OAAI

Andreev, Dmitry E.; O'Connor, Patrick B. F.; Zhdanov, Alexander V.; Dmitriev, Ruslan I.; Shatsky, Ivan N.; Papkovsky, Dmitri B.; Baranov, Pavel V.

Translation of 5' leaders is pervasive in genes resistant to eIF2 repression 5' 领导者的翻译在抗eIF2抑制的基因中普遍存在

ELIFE

IF0

2015-01-26

286

OAAI

Andreev, Dmitry E.; O'Connor, Patrick B. F.; Fahey, Ciara; Kenny, Elaine M.; Terenin, Ilya M.; Dmitriev, Sergey E.; Cormican, Paul; Morris, Derek W.; Shatsky, Ivan N.; Baranov, Pavel V.

GWIPS-viz: development of a ribo-seq genome browser

NUCLEIC ACIDS RESEARCH

IF13.1

2013-10-31

196

OAAI

Michel, Audrey M.; Fox, Gearoid; Kiran, Anmol M.; De Bo, Christof; O'Connor, Patrick B. F.; Heaphy, Stephen M.; Mullan, James P. A.; Donohue, Claire A.; Higgins, Desmond G.; Baranov, Pavel V.

研究方向