Shirley Zhu

Stanford University

37H指数

98论文数

2.4W被引数

收录论文 28

发表时间

Cytokine priming enhances the antifibrotic effects of human adipose derived mesenchymal stromal cells conditioned medium

STEM CELL RESEARCH & THERAPY

IF7.3

2024-09-27

OAAI

Brizio, Marianela; Mancini, Mathieu; Lora, Maximilien; Joy, Sydney; Zhu, Shirley; Brilland, Benoit; Reinhardt, Dieter P.; Farge, Dominique; Langlais, David; Colmegna, Ines

Spatially Segregated Macrophage Populations Predict Distinct Outcomes in Colon Cancer

CANCER DISCOVERY

IF33.3

2024-03-27

OAAI

Matusiak, Magdalena; Hickey, John W.; van IJzendoorn, David G. P.; Lu, Guolan; Kidzinski, Lukasz; Zhu, Shirley; Colburg, Deana R. C.; Luca, Bogdan; Phillips, Darci J.; Brubaker, Sky W.; Charville, Gregory W.; Shen, Jeanne; Loh, Kyle M.; Okwan-Duodu, Derick K.; Nolan, Garry P.; Newman, Aaron M.; West, Robert B.; van de Rijn, Matt

Cost-effective DNA methylation profiling by FML-seq

LIFE SCIENCE ALLIANCE

IF2.9

2023-09-29

OAAI

Foley, Joseph W.; Zhu, Shirley X.; West, Robert B.

The STE20 kinase HGK is broadly expressed in human tumor cells and can modulate cellular transformation, invasion, and adhesion

MOLECULAR AND CELLULAR BIOLOGY

IF2.7

2023-03-27

139

OAAI

Wright, JH; Wang, XY; Manning, G; LaMere, BJ; Le, P; Zhu, S; Khatry, D; Flanagan, PM; Buckley, SD; Whyte, DB; Howlett, AR; Bischoff, JR; Lipson, KE; Jallal, B

Unraveling the Relevance of Tissue-Specific Decellularized Extracellular Matrix Hydrogels for Vocal Fold Regenerative Biomaterials: A Comprehensive Proteomic and In Vitro Study

ADVANCED NANOBIOMED RESEARCH

IF4.4

2023-01-31

OAAI

Brown, Mika; Zhu, Shirley; Taylor, Lorne; Tabrizian, Maryam; Li-Jessen, Nicole Y. K.

A multiplexed in vivo approach to identify driver genes in small cell lung cancer

CELL REPORTS

IF6.9

2023-01-01

OAAI

Lee, Myung Chang; Cai, Hongchen; Murray, Christopher W.; Li, Chuan; Shue, Yan Ting; Andrejka, Laura; He, Andy L.; Hozlem, Alessandra M. E.; Drainans, Alexandros P.; Ko, Julie H.; Coles, Garry L.; Kong, Christina; Zhu, Shirley; Zhu, ChunFang; Wang, Jason; Rijn, Matt van de; Petrov, Dmitri A.; Winslow, Monte M.; Sage, Julien

The microdissected gene expression landscape of nasopharyngeal cancer reveals vulnerabilities in FGF and noncanonical NF-κB signaling 鼻咽癌的显微解剖基因表达景观揭示了FGF和非经典nf-κb信号传导的脆弱性

SCIENCE ADVANCES

IF12.5

2022-04-08

OAAI

Tay, Joshua K.; Zhu, Chunfang; Shin, June Ho; Zhu, Shirley X.; Varma, Sushama; Foley, Joseph W.; Vennam, Sujay; Yip, Yim Ling; Goh, Chuan Keng; Wang, De Yun; Loh, Kwok Seng; Tsao, Sai Wah; Le, Quynh-Thu; Sunwoo, John B.; West, Robert B.

The Breast PreCancer Atlas DCIS genomic signatures define biology and correlate with clinical outcomes: An analysis of TBCRC 038 and RAHBT cohorts

CANCER RESEARCH

IF16.6

2022-02-15

PREAI

Strand, Siri H.; Rivero-Gutierrez, Belen; Houlahan, Kathleen E.; Seoane, Jose A.; King, Lorraine M.; Risom, Tyler; Simpson, Lunden; Vennam, Sujay; Khan, Aziz; Hardman, Timothy; Harmon, Bryan E.; Couch, Fergus J.; Gallagher, Kristalyn; Kilgore, Mark; Wei, Shi; DeMichele, Angela; King, Tari; McAuliffe, Priscilla F.; Nangia, Julie; Lee, Joanna; Tseng, Jennifer; Storniolo, Anna Maria; Thompson, Alastair; Gupta, Gaorav; Burns, Robyn; Veis, Deborah J.; DeSchryver, Katherine; Zhu, Chunfang; Matusiak, Magdalena; Wang, Jason; Zhu, Shirley X.; Tappenden, Jen; Ding, Daisy Yi; Zhang, Dadong; Luo, Jingqin; Jiang, Shu; Varma, Sushama; Straub, Cody; Srivastava, Sucheta; Curtis, Christina; Tibshirani, Rob; Angelo, Robert Michael; Hall, Allison; Owzar, Kouros; Polyak, Kornelia; Maley, Carlo; Marks, Jeffrey R.; Colditz, Graham A.; Hwang, E. Shelley; West, Robert B.

Transcriptome and genome evolution during HER2-amplified breast neoplasia HER2-amplified乳腺肿瘤形成过程中的转录组和基因组进化

BREAST CANCER RESEARCH

IF5.6

2021-07-15

OAAI

Lu, Peipei; Foley, Joseph; Zhu, Chunfang; McNamara, Katherine; Sirinukunwattana, Korsuk; Vennam, Sujay; Varma, Sushama; Fehri, Hamid; Srivastava, Arunima; Zhu, Shirley; Rittscher, Jens; Mallick, Parag; Curtis, Christina; West, Robert

Gene expression profiling of single cells from archival tissue with laser-capture microdissection and Smart-3SEQ 通过激光捕获显微切割和Smart-3SEQ对档案组织中的单个细胞进行基因表达谱分析

GENOME RESEARCH

IF5.5

2019-09-13

OAAI

Foley, Joseph W.; Zhu, Chunfang; Jolivet, Philippe; Zhu, Shirley X.; Lu, Peipei; Meaney, Michael J.; West, Robert B.

Genomic analysis of benign prostatic hyperplasia implicates cellular relandscaping in disease pathogenesis

JCI INSIGHT

IF6.1

2019-06-20

OAAI

Middleton, Lance W.; Shen, Zhewei; Varma, Sushama; Pollack, Anna S.; Gong, Xue; Zhu, Shirley; Zhu, Chunfang; Foley, Joseph W.; Vennam, Sujay; Sweeney, Robert T.; Tu, Karen; Biscocho, Jewison; Eminaga, Okyaz; Nolley, Rosalie; Tibshirani, Robert; Brooks, James D.; West, Robert B.; Pollack, Jonathan R.

A shared transcriptional program in early breast neoplasias despite genetic and clinical distinctions

GENOME BIOLOGY

IF9.4

2014-05-23

OAAI

Brunner, Alayne L.; Li, Jun; Guo, Xiangqian; Sweeney, Robert T.; Varma, Sushama; Zhu, Shirley X.; Li, Rui; Tibshirani, Robert; West, Robert B.

Next generation sequencing-based expression profiling identifies signatures from benign stromal proliferations that define stromal components of breast cancer

BREAST CANCER RESEARCH

IF5.6

2013-12-17

OAAI

Guo, Xiangqian; Zhu, Shirley X.; Brunner, Alayne L.; van de Rijn, Matt; West, Robert B.

Breakpoint Analysis of Transcriptional and Genomic Profiles Uncovers Novel Gene Fusions Spanning Multiple Human Cancer Types

PLOS GENETICS

IF3.7

2013-04-25

112

OAAI

Giacomini, Craig P.; Sun, Steven; Varma, Sushama; Shain, A. Hunter; Giacomini, Marilyn M.; Balagtas, Jay; Sweeney, Robert T.; Lai, Everett; Del Vecchio, Catherine A.; Forster, Andrew D.; Clarke, Nicole; Montgomery, Kelli D.; Zhu, Shirley; Wong, Albert J.; van de Rijn, Matt; West, Robert B.; Pollack, Jonathan R.

Genome evolution during progression to breast cancer

GENOME RESEARCH

IF5.5

2013-04-08

OAAI

Newburger, Daniel E.; Kashef-Haghighi, Dorna; Weng, Ziming; Salari, Raheleh; Sweeney, Robert T.; Brunner, Alayne L.; Zhu, Shirley X.; Guo, Xiangqian; Varma, Sushama; Troxell, Megan L.; West, Robert B.; Batzoglou, Serafim; Sidow, Arend

Transcriptional profiling of long non-coding RNAs and novel transcribed regions across a diverse panel of archived human cancers

GENOME BIOLOGY

IF9.4

2012-08-28

227

OAAI

Brunner, Alayne L.; Beck, Andrew H.; Edris, Badreddin; Sweeney, Robert T.; Zhu, Shirley X.; Li, Rui; Montgomery, Kelli; Varma, Sushama; Gilks, Thea; Guo, Xiangqian; Foley, Joseph W.; Witten, Daniela M.; Giacomini, Craig P.; Flynn, Ryan A.; Pollack, Jonathan R.; Tibshirani, Robert; Chang, Howard Y.; van de Rijn, Matt; West, Robert B.

Phosphatidylinositol-3-kinase pathway mutations are common in breast columnar cell lesions

MODERN PATHOLOGY

IF5.5

2012-07-01

PREAI

Troxell, Megan L.; Brunner, Alayne L.; Neff, Tanaya; Warrick, Andrea; Beadling, Carol; Montgomery, Kelli; Zhu, Shirley; Corless, Christopher L.; West, Robert B.

ROR2 is a novel prognostic biomarker and a potential therapeutic target in leiomyosarcoma and gastrointestinal stromal tumour

JOURNAL OF PATHOLOGY

IF5.2

2012-02-17

OAAI

Edris, Badreddin; Espinosa, Inigo; Muehlenberg, Thomas; Mikels, Amanda; Lee, Cheng-Han; Steigen, Sonja E.; Zhu, Shirley; Montgomery, Kelli D.; Lazar, Alexander J. F.; Lev, Dina; Fletcher, Jonathan A.; Beck, Andrew H.; West, Robert B.; Nusse, Roel; van de Rijn, Matt

Increased midkine expression correlates with desmoid tumour recurrence: a potential biomarker and therapeutic target

JOURNAL OF PATHOLOGY

IF5.2

2011-08-08

PREAI

Colombo, Chiara; Creighton, Chad J.; Ghadimi, Markus P.; Bolshakov, Svetlana; Warneke, Carla L.; Zhang, Yiqun; Lusby, Kristelle; Zhu, Shirley; Lazar, Alexander J.; West, Robert B.; van de Rijn, Matt; Lev, Dina

Discovery of molecular subtypes in leiomyosarcoma through integrative molecular profiling

ONCOGENE

IF7.3

2009-11-09

117

OAAI

Beck, A. H.; Lee, C-H; Witten, D. M.; Gleason, B. C.; Edris, B.; Espinosa, I.; Zhu, S.; Li, R.; Montgomery, K. D.; Marinelli, R. J.; Tibshirani, R.; Hastie, T.; Jablons, D. M.; Rubin, B. P.; Fletcher, C. D.; West, R. B.; van de Rijn, M.

研究方向