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Streamlined extraction of nucleic acids and metabolites from low- and high-biomass samples using isopropanol and matrix tubes 使用异丙醇和基质管从低生物量和高生物量样品中简化的核酸和代谢物提取 Brennan, Caitriona; Shaffer, Justin P.; Belda-Ferre, Pedro; Mohanty, Ipsita; Weng, Yuhan; Cantrell, Kalen; Ackermann, Gail; Allaband, Celeste; Bryant, Mackenzie; Farmer, Sawyer; Gonzalez, Antonio; Mcdonald, Daniel; Martino, Cameron; Meehan, Michael J.; Rahman, Gibraan; Salido, Rodolfo A.; Schwartz, Tara; Song, Se Jin; Tribelhorn, Caitlin; Tubb, Helena M.; Dorrestein, Pieter C.; Knight, Rob 分享 收藏
Bladder health and the urogenital microbiome in community-dwelling adult females 膀胱健康与社区居住成年女性的泌尿生殖道微生物组 Brubaker, L.; Mcdonald, D.; Putnam, S.; Brennan, C.; Fok, C. S.; Lewis, C. E.; Lowder, J. L.; Mueller, M. G.; Rickey, L. M.; Mueller, E. R.; Song, S. J.; Rudser, K.; Knight, R.; Lukacz, E. S. 分享 收藏
CaDAVEr: a metagenome-assembled genome catalog of microbial decomposers across vertebrate environments CaDAVEr：一个跨越脊椎动物环境的微生物分解者宏基因组组装基因组目录 Seitz, Valerie A.; McGivern, Bridget B.; Shaffer, Michael; Borton, Mikayla A.; Belk, Aeriel D.; Ghadermazi, Parsa; Martino, Cameron; Shenhav, Liat; Zhang, Anru R.; Shi, Pixu; Emmons, Alexandra; Deel, Heather; Xu, Zhenjiang Zech; Nieciecki, Victoria; Zhu, Qiyun; Cantrell, Kalen; Ben-Hur, Asa; Reed, Sasha C.; Humphry, Greg C.; Ackermann, Gail; McDonald, Daniel; Chan, Siu Hung Joshua; Connor, Melissa; Boyd, Derek A.; Smith, Jake; Watson, Jenna M. S.; Vidoli, Giovanna; Steadman, Dawnie; Lynne, Aaron M.; Bucheli, Sibyl; Carter, David O.; Burcham, Zachary M.; Knight, Rob; Wrighton, Kelly C.; Metcalf, Jessica L. 分享 收藏
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SARS-CoV-2 infectivity can be modulated through bacterial grooming of the glycocalyx SARS-CoV-2感染性可以通过糖萼的细菌修饰来调节 Martino, Cameron; Kellman, Benjamin P.; Sandoval, Daniel R.; Clausen, Thomas Mandel; Cooper, Robert; Benjdia, Alhosna; Soualmia, Feryel; Clark, Alex E.; Garretson, Aaron F.; Marotz, Clarisse A.; Song, Se Jin; Wandro, Stephen; Zaramela, Livia S.; Salido, Rodolfo A.; Zhu, Qiyun; Armingol, Erick; Vazquez-Baeza, Yoshiki; Mcdonald, Daniel; Sorrentino, James T.; Taylor, Bryn; Belda-Ferre, Pedro; Das, Promi; Ali, Farhana; Liang, Chenguang; Zhang, Yujie; Schifanella, Luca; Covizzi, Alice; Lai, Alessia; Riva, Agostino; Basting, Christopher; Broedlow, Courtney Ann; Havulinna, Aki S.; Jousilahti, Pekka; Estaki, Mehrbod; Kosciolek, Tomasz; Kuplicki, Rayus; Victor, Teresa A.; Paulus, Martin P.; Savage, Kristen E.; Benbow, Jennifer L.; Spielfogel, Emma S.; Anderson, Cheryl A. M.; Martinez, Maria Elena; Lacey, James V.; Huang, Shi; Haiminen, Niina; Parida, Laxmi; Kim, Ho-Cheol; Gilbert, Jack A.; Sweeney, Daniel A.; Allard, Sarah M.; Swafford, Austin D.; Cheng, Susan; Inouye, Michael; Niiranen, Teemu; Jain, Mohit; Salomaa, Veikko; Zengler, Karsten; Klatt, Nichole R.; Hasty, Jeff; Berteau, Olivier; Carlin, Aaron F.; Esko, Jeffrey D.; Lewis, Nathan E.; Knight, Rob 分享 收藏
Depression in Individuals Coinfected with HIV and HCV Is Associated with Systematic Differences in the Gut Microbiome and Metabolome (vol 5, e0046520, 2020) 合并感染HIV和HCV的个体的抑郁与肠道微生物组和代谢组的系统差异有关 (第5卷，e0046520，2020) Taylor, Bryn C.; Weldon, Kelly C.; Ellis, Ronald J.; Franklin, Donald; Groth, Tobin; Gentry, Emily C.; Tripathi, Anupriya; Mcdonald, Daniel; Humphrey, Gregory; Bryant, Mackenzie; Toronczak, Julia; Schwartz, Tara; Oliveira, Michelli F.; Heaton, Robert; Grant, Igor; Gianella, Sara; Letendre, Scott; Swafford, Austin; Dorrestein, Pieter C.; Knight, Rob 分享 收藏
The International Space Station has a unique and extreme microbial and chemical environment driven by use patterns 国际空间站具有由使用模式驱动的独特且极端的微生物和化学环境。 Salido, Rodolfo A.; Zhao, Haoqi Nina; Mcdonald, Daniel; Mannochio-Russo, Helena; Zuffa, Simone; Oles, Renee E.; Aron, Allegra T.; El Abiead, Yasin; Farmer, Sawyer; Gonzalez, Antonio; Martino, Cameron; Mohanty, Ipsita; Parker, Ceth W.; Patel, Lucas; Gomes, Paulo Wender Portal; Schmid, Robin; Schwartz, Tara; Zhu, Jennifer; Barratt, Michael R.; Rubins, Kathleen H.; Chu, Hiutung; Karouia, Fathi; Venkateswaran, Kasthuri; Dorrestein, Pieter C.; Knight, Rob 分享 收藏
Maximizing the potential of high-throughput next-generation sequencing through precise normalization based on read count distribution (vol 8, e00006-23, 2023) 通过基于读段计数分布的精确归一化，最大限度地提高高通量下一代测序的潜力 (第8卷，e00006-23，2023) Brennan, Caitriona; Salido, Rodolfo A.; Belda-Ferre, Pedro; Bryant, Mackenzie; Cowart, Charles; Tiu, Maria D.; Gonzalez, Antonio; Mcdonald, Daniel; Tribelhorn, Caitlin; Zarrinpar, Amir; Knight, Rob 分享 收藏
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Phylogeny-Aware Analysis of Metagenome Community Ecology Based on Matched Reference Genomes while Bypassing Taxonomy (vol 7, pg e00167, 2023) 基于匹配的参考基因组，同时绕过分类学，对宏基因组群落生态学进行系统发育感知分析 (第7卷，pg e00167，2023) Zhu, Qiyun; Huang, Shi; Gonzalez, Antonio; Mcgrath, Imran; Mcdonald, Daniel; Haiminen, Niina; Armstrong, George; Vazquez-Baeza, Yoshiki; Yu, Julian; Kuczynski, Justin; Sepich-Poore, Gregory D.; Swafford, Austin D.; Das, Promi; Shaffer, Justin P.; Lejzerowicz, Franck; Belda-Ferre, Pedro; Havulinna, Aki S.; Meric, Guillaume; Niiranen, Teemu; Lahti, Leo; Salomaa, Veikko; Kim, Ho-Cheol; Jain, Mohit; Inouye, Michael; Gilbert, Jack A.; Knight, Rob 分享 收藏
Whole-body metabolic modelling reveals microbiome and genomic interactions on reduced urine formate levels in Alzheimer's disease (vol 14, 6095, 2024) 全身代谢模型揭示了微生物组和基因组相互作用对减少尿甲酸盐水平在阿尔茨海默氏病 (卷14，6095，2024) Martinelli, Filippo; Heinken, Almut; Henning, Ann-Kristin; Ulmer, Maria A.; Hensen, Tim; Gonzalez, Antonio; Arnold, Matthias; Asthana, Sanjay; Budde, Kathrin; Engelman, Corinne D.; Estaki, Mehrbod; Grabe, Hans-Joergen; Heston, Margo B.; Johnson, Sterling; Kastenmueller, Gabi; Martino, Cameron; Mcdonald, Daniel; Rey, Federico E.; Kilimann, Ingo; Peters, Olive; Wang, Xiao; Spruth, Eike Jakob; Schneider, Anja; Fliessbach, Klaus; Wiltfang, Jens; Hansen, Niels; Buerger, Katharina; Janowitz, Daniel; Laske, Christoph; Munk, Matthias H.; Spottke, Annika; Roy, Nina; Nauck, Matthias; Teipel, Stefan; Knight, Rob; Kaddurah-Daouk, Rima F.; Bendlin, Barbara B.; Hertel, Johannes; Thiele, Ines 分享 收藏
Clearing the plate: a strategic approach to mitigate well-to-well contamination in large-scale microbiome studies 清理板块: 在大规模微生物组研究中减轻井对井污染的战略方法 Brennan, Caitriona; Belda-Ferre, Pedro; Zuffa, Simone; Charron-Lamoureux, Vincent; Mohanty, Ipsita; Ackermann, Gail; Allaband, Celeste; Ambre, Madison; Boyer, Tara; Bryant, MacKenzie; Cantrell, Kalen; Gonzalez, Antonio; McDonald, Daniel; Salido, Rodolfo A.; Song, Se Jin; Wright, Gillian; Dorrestein, Pieter C.; Knight, Rob 分享 收藏
Differential gut microbiota composition in β-Thalassemia patients and its correlation with iron overload Nonejuie, Poochit; Wilantho, Alisa; McDonald, Daniel; Htoo, Htut Htut; Chalerm, Jenjira; Tripathi, Anupriya; Ngamphiw, Chumpol; Tongsima, Sissades; Knight, Rob; Paiboonsukwong, Kittiphong; Fucharoen, Suthat 分享 收藏
Effects of intensive lifestyle changes on the progression of mild cognitive impairment or early dementia due to Alzheimer's disease: a randomized, controlled clinical trial Ornish, Dean; Madison, Catherine; Kivipelto, Miia; Kemp, Colleen; McCulloch, Charles E.; Galasko, Douglas; Artz, Jon; Rentz, Dorene; Lin, Jue; Norman, Kim; Ornish, Anne; Tranter, Sarah; DeLamarter, Nancy; Wingers, Noel; Richling, Carra; Kaddurah-Daouk, Rima; Knight, Rob; McDonald, Daniel; Patel, Lucas; Verdin, Eric; Tanzi, Rudolph E.; Arnold, Steven E. 分享 收藏
Improving microbial phylogeny with citizen science within a mass-market video game Sarrazin-Gendron, Roman; Gheidari, Parham Ghasemloo; Butyaev, Alexander; Keding, Timothy; Cai, Eddie; Zheng, Jiayue; Mutalova, Renata; Mounthanyvong, Julien; Zhu, Yuxue; Nazarova, Elena; Drogaris, Chrisostomos; Erhart, Kornel; Brouillette, Amelie; Richard, Gabriel; Pitchford, Randy; Caisse, Sebastien; Blanchette, Mathieu; Mcdonald, Daniel; Knight, Rob; Szantner, Attila; Waldispuhl, Jerome 分享 收藏
Robustness of cancer microbiome signals over a broad range of methodological variation (vol 43, pg 1127, 2024) Sepich-Poore, Gregory D.; McDonald, Daniel; Kopylova, Evguenia; Guccione, Caitlin; Zhu, Qiyun; Austin, George; Carpenter, Carolina; Fraraccio, Serena; Wandro, Stephen; Kosciolek, Tomasz; Janssen, Stefan; Metcalf, Jessica L.; Song, Se Jin; Kanbar, Jad; Miller-Montgomery, Sandrine; Heaton, Robert; Mckay, Rana; Patel, Sandip Pravin; Swafford, Austin D.; Korem, Tal; Knight, Rob 分享 收藏
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Whole-body metabolic modelling reveals microbiome and genomic interactions on reduced urine formate levels in Alzheimer's disease Martinelli, Filippo; Heinken, Almut; Henning, Ann-Kristin; Ulmer, Maria A.; Hensen, Tim; Gonzalez, Antonio; Arnold, Matthias; Asthana, Sanjay; Budde, Kathrin; Engelman, Corinne D.; Estaki, Mehrbod; Grabe, Hans-Joergen; Heston, Margo B.; Johnson, Sterling; Kastenmueller, Gabi; Martino, Cameron; Mcdonald, Daniel; Rey, Federico E.; Kilimann, Ingo; Peters, Olive; Wang, Xiao; Spruth, Eike Jakob; Schneider, Anja; Fliessbach, Klaus; Wiltfang, Jens; Hansen, Niels; Glanz, Wenzel; Buerger, Katharina; Janowitz, Daniel; Laske, Christoph; Munk, Matthias H.; Spottke, Annika; Roy, Nina; Nauck, Matthias; Teipel, Stefan; Knight, Rob; Kaddurah-Daouk, Rima F.; Bendlin, Barbara B.; Hertel, Johannes; Thiele, Ines 分享 收藏
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