Yang Zhang - Publications, H-index & Citations

Yang Zhang

carnegie mellon university

29H指数

101论文数

3.1K被引数

收录论文 37

发表时间

Single-cell multiomics connects 3D genome and transcriptome alterations in Alzheimer’s disease 单细胞多组学连接阿尔茨海默病中三维基因组与转录组的改变

Science

IF45.8

2026-07-23

PREAI

Yang Zhang; Xinyue Lu; Alexander K. Kunisky; Shahul Alam; Junjie Tang; Ruochi Zhang; Shike Wang; Han Zhang; Jude Baroudi; Walid Ichcho; Deyong Jia; Sahar Ghorbanikalateh; Sahel Ghorbanikalateh; Shihan Wang; David A. Bennett; Hansruedi Mathys; Zhijun Duan; Jian Ma

An integrated view of the structure and function of the human 4D nucleome 人类4D核体结构与功能的综合视图

Nature

IF48.5

2025-12-17

OAAI

Job Dekker; Betul Akgol Oksuz; Yang Zhang; Ye Wang; Miriam K. Minsk; Shuzhen Kuang; Liyan Yang; Johan H. Gibcus; Nils Krietenstein; Oliver J. Rando; Jie Xu; Derek H. Janssens; Steven Henikoff; Alexander Kukalev; Willemin Andréa; Warren Winick-Ng; Rieke Kempfer; Ana Pombo; Miao Yu; Pradeep Kumar; Liguo Zhang; Andrew S. Belmont; Takayo Sasaki; Tom van Schaik; Laura Brueckner; Daan Peric-Hupkes; Bas van Steensel; Ping Wang; Haoxi Chai; Minji Kim; Yijun Ruan; Ran Zhang; Sofia A. Quinodoz; Prashant Bhat; Mitchell Guttman; Wenxin Zhao; Shu Chien; Yuan Liu; Sergey V. Venev; Dariusz Plewczynski; Ibai Irastorza Azcarate; Dominik Szabó; Christoph J. Thieme; Teresa Szczepińska; Mateusz Chiliński; Kaustav Sengupta; Mattia Conte; Andrea Esposito; Alex Abraham; Ruochi Zhang; Yuchuan Wang; Xingzhao Wen; Qiuyang Wu; Yang Yang; Jie Liu; Lorenzo Boninsegna; Asli Yildirim; Yuxiang Zhan; Andrea Maria Chiariello; Simona Bianco; Lindsay Lee; Ming Hu; Yun Li; R. Jordan Barnett; Ashley L. Cook; Daniel J. Emerson; Claire Marchal; Peiyao Zhao; Peter J. Park; Burak H. Alver; Andrew J. Schroeder; Rahi Navelkar; Clara Bakker; William Ronchetti; Shannon Ehmsen; Alexander D. Veit; Nils Gehlenborg; Ting Wang; Daofeng Li; Xiaotao Wang; Mario Nicodemi; Bing Ren; Sheng Zhong; Jennifer E. Phillips-Cremins; David M. Gilbert; Katherine S. Pollard; Frank Alber; Jian Ma; William S. Noble; Feng Yue

DNALONGBENCH: a benchmark suite for long-range DNA prediction tasks DNALONGBENCH：一个用于长程DNA预测任务的基准测试套件

Nature Communications

IF15.7

2025-11-18

OAAI

Wenduo Cheng; Zhenqiao Song; Yang Zhang; Shike Wang; Danqing Wang; Muyu Yang; Lei Li; Jian Ma

Nucleolus and centromere Tyramide Signal Amplification-Seq reveals variable localization of heterochromatin in different cell types

COMMUNICATIONS BIOLOGY

IF5.1

2024-09-13

OAAI

Kumar, Pradeep; Gholamalamdari, Omid; Zhang, Yang; Zhang, Liguo; Vertii, Anastassiia; van Schaik, Tom; Peric-Hupkes, Daan; Sasaki, Takayo; Gilbert, David M.; van Steensel, Bas; Ma, Jian; Kaufman, Paul D.; Belmont, Andrew S.

Haematococcus lacustris Carotenogensis: A Historical Event of Primary to Secondary Adaptations to Earth's Oxygenation

LIFE-BASEL

IF3.4

2024-04-30

OAAI

Qu, Cui Lan; Jin, Hui; Zhang, Bing; Chen, Wei Jian; Zhang, Yang; Xu, Yuan Yuan; Wang, Rui; Lao, Yong Min

Computational methods for analysing multiscale 3D genome organization 分析多尺度三维基因组组织的计算方法

NATURE REVIEWS GENETICS

IF52

2023-09-06

OAAI

Zhang, Yang; Boninsegna, Lorenzo; Yang, Muyu; Misteli, Tom; Alber, Frank; Ma, Jian

Developmentally programmed early-age skin localization of iNKT cells supports local tissue development and homeostasis

NATURE IMMUNOLOGY

IF27.6

2023-01-09

PREAI

Wang, Wei-Bei; Lin, Yang-Ding; Zhao, Luming; Liao, Chang; Zhang, Yang; Davila, Micha; Sun, Jasmine; Chen, Yidong; Xiong, Na

Integration of transcriptomic and metabolomic data reveals new tetraploid kiwifruit hybrids with enhanced nutrients

LWT-FOOD SCIENCE AND TECHNOLOGY

IF6.6

2022-12-01

OAAI

Zhang, Jing; Du, Kui; Xie, Yue; Zhang, Xin; Jiang, Wenqian; Li, Mingzhang; Shu, Peng; Wang, Jiayu; Zhuang, Qiguo; Wang, Hsihua; Liu, Mingchun; Zhang, Yang; Zhang, Zixin

Nucleome Browser: an integrative and multimodal data navigation platform for 4D Nucleome Nucleome Browser: 4D Nucleome的集成和多模式数据导航平台

NATURE METHODS

IF32.1

2022-07-21

OAAI

Zhu, Xiaopeng; Zhang, Yang; Wang, Yuchuan; Tian, Dechao; Belmont, Andrew S.; Swedlow, Jason R.; Ma, Jian

Feeding activates FGF15-SHP-TFEB-mediated lipophagy in the gut 喂食会激活肠道中的FGF15-SHP-TFEB-mediated吞噬作用

EMBO JOURNAL

IF8.3

2022-06-10

OAAI

Seok, Sunmi; Kim, Young-Chae; Zhang, Yang; Kong, Bo; Guo, Grace; Ma, Jian; Kemper, Byron; Kemper, Jongsook Kim

CubeSense: Wireless, Battery-Free Interactivity through Low-Cost Corner Reflector Mechanisms CubeSense: 通过低成本角反射器机制实现无线、无电池交互

extended abstracts of the

IF0

2021-05-08

PREAI

Yang, Xiaoying; Zhang, Yang

SPIN reveals genome-wide landscape of nuclear compartmentalization SPIN揭示了核区室化的全基因组景观

GENOME BIOLOGY

IF9.4

2021-01-14

OAAI

Wang, Yuchuan; Zhang, Yang; Zhang, Ruochi; van Schaik, Tom; Zhang, Liguo; Sasaki, Takayo; Peric-Hupkes, Daniel; Chen, Yu; Gilbert, David M.; van Steensel, Bas; Belmont, Andrew S.; Ma, Jian

TSA-seq reveals a largely conserved genome organization relative to nuclear speckles with small position changes tightly correlated with gene expression changes Tsa-seq揭示了相对于核斑点而言，很大程度上保守的基因组组织，其位置变化与基因表达变化紧密相关。

GENOME RESEARCH

IF5.5

2020-12-18

OAAI

Zhang, Liguo; Zhang, Yang; Chen, Yu; Gholamalamdari, Omid; Wang, Yuchuan; Ma, Jian; Belmont, Andrew S.

Intestinal FGF15/19 physiologically repress hepatic lipogenesis in the late fed-state by activating SHP and DNMT3A 肠道FGF15/19通过激活SHP和DNMT3A在进食后期生理上抑制肝脏脂肪生成

NATURE COMMUNICATIONS

IF15.7

2020-11-24

OAAI

Kim, Young-Chae; Seok, Sunmi; Zhang, Yang; Ma, Jian; Kong, Bo; Guo, Grace; Kemper, Byron; Kemper, Jongsook Kim

Antagonism between splicing and microprocessor complex dictates the serum-induced processing of lnc-MIRHG for efficient cell cycle reentry

RNA

IF5

2020-07-16

OAAI

Sun, Qinyu; Hao, Qinyu; Lin, Yo-Chuen; Song, You Jin; Bangru, Sushant; Arif, Waqar; Tripathi, Vidisha; Zhang, Yang; Cho, Jung-Hyun; Freier, Susan M.; Jenkins, Lisa M.; Ma, Jian; Yoon, Je-Hyun; Kalsotra, Auinash; Lal, Ashish; Prasanth, Supriya G.; Prasanth, Kannanganattu, V

MicroRNA-210 Promotes Bile Acid-Induced Cholestatic Liver Injury by Targeting Mixed-Lineage Leukemia-4 Methyltransferase in Mice

HEPATOLOGY

IF15.8

2020-02-14

OAAI

Kim, Young-Chae; Jung, Hyunkyung; Seok, Sunmi; Zhang, Yang; Ma, Jian; Li, Tiangang; Kemper, Byron; Kemper, Jongsook Kim

Fasting-induced FGF21 signaling activates hepatic autophagy and lipid degradation via JMJD3 histone demethylase

NATURE COMMUNICATIONS

IF15.7

2020-02-10

152

OAAI

Byun, Sangwon; Seok, Sunmi; Kim, Young-Chae; Zhang, Yang; Yau, Peter; Iwamori, Naoki; Xu, H. Eric; Ma, Jian; Kemper, Byron; Kemper, Jongsook Kim

MOCHI enables discovery of heterogeneous interactome modules in 3D nucleome

GENOME RESEARCH

IF5.5

2020-01-06

OAAI

Tian, Dechao; Zhang, Ruochi; Zhang, Yang; Zhu, Xiaopeng; Ma, Jian

LncRNA-mediated regulation of SOX9 expression in basal subtype breast cancer cells

RNA

IF5

2019-11-05

OAAI

Tariq, Aamira; Hao, Qinyu; Sun, Qinyu; Singh, Deepak K.; Jadaliha, Mahdieh; Zhang, Yang; Chetlangia, Neha; Ma, Jian; Holton, Sarah E.; Bhargava, Rohit; Lal, Ashish; Prasanth, Supriya G.; Prasanth, Kannanganattu V.

Sozu: Self-Powered Radio Tags for Building-Scale Activity Sensing Sozu: 用于建筑物规模活动传感的自供电无线电标签

proceedings of the

IF0

2019-10-17

OAAI

Zhang, Yang; Iravantchi, Yasha; Jin, Haojian; Kumar, Swarun; Harrison, Chris

研究方向