未登录Extend the benchmarking indel set by manual review using the individual cell line sequencing data from the Sequencing Quality Control 2 (SEQC2) project
Gong, Binsheng; Li, Dan; Zhang, Yifan; Kusko, Rebecca; Lababidi, Samir; Cao, Zehui; Chen, Mingyang; Chen, Ning; Chen, Qiaochu; Chen, Qingwang; Dai, Jiacheng; Gan, Qiang; Gao, Yuechen; Guo, Mingkun; Hariani, Gunjan; He, Yujie; Hou, Wanwan; Jiang, He; Kushwaha, Garima; Li, Jian-Liang; Li, Jianying; Li, Yulan; Liu, Liang-Chun; Liu, Ruimei; Liu, Shiming; Meriaux, Edwin; Mo, Mengqing; Moore, Mathew; Moss, Tyler J.; Niu, Quanne; Patel, Ananddeep; Ren, Luyao; Saremi, Nedda F.; Shang, Erfei; Shang, Jun; Song, Ping; Sun, Siqi; Urban, Brent J.; Wang, Danke; Wang, Shangzi; Wen, Zhining; Xiong, Xiangyi; Yang, Jingcheng; Yin, Lihui; Zhang, Chao; Zhang, Ruolan; Bhandari, Ambica; Cai, Wanshi; Eterovic, Agda Karina; Megherbi, Dalila B.; Shi, Tieliu; Suo, Chen; Yu, Ying; Zheng, Yuanting; Novoradovskaya, Natalia; Sears, Renee L.; Shi, Leming; Jones, Wendell; Tong, Weida; Xu, Joshua
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收藏Deep oncopanel sequencing reveals within block position-dependent quality degradation in FFPE processed samples
Zhang, Yifan; Blomquist, Thomas M.; Kusko, Rebecca; Stetson, Daniel; Zhang, Zhihong; Yin, Lihui; Sebra, Robert; Gong, Binsheng; Lococo, Jennifer S.; Mittal, Vinay K.; Novoradovskaya, Natalia; Yeo, Ji-Youn; Dominiak, Nicole; Hipp, Jennifer; Raymond, Amelia; Qiu, Fujun; Arib, Hanane; Smith, Melissa L.; Brock, Jay E.; Farkas, Daniel H.; Craig, Daniel J.; Crawford, Erin L.; Li, Dan; Morrison, Tom; Tom, Nikola; Xiao, Wenzhong; Yang, Mary; Mason, Christopher E.; Richmond, Todd A.; Jones, Wendell; Johann, Donald J., Jr.; Shi, Leming; Tong, Weida; Willey, James C.; Xu, Joshua
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收藏Advancing NGS quality control to enable measurement of actionable mutations in circulating tumor DNA
Willey, James C.; Morrison, Tom B.; Austermiller, Bradley; Crawford, Erin L.; Craig, Daniel J.; Blomquist, Thomas M.; Jones, Wendell D.; Wali, Aminah; Lococo, Jennifer S.; Haseley, Nathan; Richmond, Todd A.; Novoradovskaya, Natalia; Kusko, Rebecca; Chen, Guangchun; Li, Quan-Zhen; Johann, Donald J.; Deveson, Ira W.; Mercer, Timothy R.; Wu, Leihong; Xu, Joshua
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收藏A verified genomic reference sample for assessing performance of cancer panels detecting small variants of low allele frequency
Jones, Wendell; Gong, Binsheng; Novoradovskaya, Natalia; Li, Dan; Kusko, Rebecca; Richmond, Todd A.; Johann, Donald J., Jr.; Bisgin, Halil; Sahraeian, Sayed Mohammad Ebrahim; Bushel, Pierre R.; Pirooznia, Mehdi; Wilkins, Katherine; Chierici, Marco; Bao, Wenjun; Basehore, Lee Scott; Lucas, Anne Bergstrom; Burgess, Daniel; Butler, Daniel J.; Cawley, Simon; Chang, Chia-Jung; Chen, Guangchun; Chen, Tao; Chen, Yun-Ching; Craig, Daniel J.; Del Pozo, Angela; Foox, Jonathan; Francescatto, Margherita; Fu, Yutao; Furlanello, Cesare; Giorda, Kristina; Grist, Kira P.; Guan, Meijian; Hao, Yingyi; Happe, Scott; Hariani, Gunjan; Haseley, Nathan; Jasper, Jeff; Jurman, Giuseppe; Kreil, David Philip; Labaj, Pawel; Lai, Kevin; Li, Jianying; Li, Quan-Zhen; Li, Yulong; Li, Zhiguang; Liu, Zhichao; Lopez, Mario Solis; Miclaus, Kelci; Miller, Raymond; Mittal, Vinay K.; Mohiyuddin, Marghoob; Pabon-Pena, Carlos; Parsons, Barbara L.; Qiu, Fujun; Scherer, Andreas; Shi, Tieliu; Stiegelmeyer, Suzy; Suo, Chen; Tom, Nikola; Wang, Dong; Wen, Zhining; Wu, Leihong; Xiao, Wenzhong; Xu, Chang; Yu, Ying; Zhang, Jiyang; Zhang, Yifan; Zhang, Zhihong; Zheng, Yuanting; Mason, Christopher E.; Willey, James C.; Tong, Weida; Shi, Leming; Xu, Joshua
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收藏Cross-oncopanel study reveals high sensitivity and accuracy with overall analytical performance depending on genomic regions
Gong, Binsheng; Li, Dan; Kusko, Rebecca; Novoradovskaya, Natalia; Zhang, Yifan; Wang, Shangzi; Pabon-Pena, Carlos; Zhang, Zhihong; Lai, Kevin; Cai, Wanshi; LoCoco, Jennifer S.; Lader, Eric; Richmond, Todd A.; Mittal, Vinay K.; Liu, Liang-Chun; Johann, Donald J., Jr.; Willey, James C.; Bushel, Pierre R.; Yu, Ying; Xu, Chang; Chen, Guangchun; Burgess, Daniel; Cawley, Simon; Giorda, Kristina; Haseley, Nathan; Qiu, Fujun; Wilkins, Katherine; Arib, Hanane; Attwooll, Claire; Babson, Kevin; Bao, Longlong; Bao, Wenjun; Lucas, Anne Bergstrom; Best, Hunter; Bhandari, Ambica; Bisgin, Halil; Blackburn, James; Blomquist, Thomas M.; Boardman, Lisa; Burgher, Blake; Butler, Daniel J.; Chang, Chia-Jung; Chaubey, Alka; Chen, Tao; Chierici, Marco; Chin, Christopher R.; Close, Devin; Conroy, Jeffrey; Coleman, Jessica Cooley; Craig, Daniel J.; Crawford, Erin; del Pozo, Angela; Deveson, Ira W.; Duncan, Daniel; Eterovic, Agda Karina; Fan, Xiaohui; Foox, Jonathan; Furlanello, Cesare; Ghosal, Abhisek; Glenn, Sean; Guan, Meijian; Haag, Christine; Hang, Xinyi; Happe, Scott; Hennigan, Brittany; Hipp, Jennifer; Hong, Huixiao; Horvath, Kyle; Hu, Jianhong; Hung, Li-Yuan; Jarosz, Mirna; Kerkhof, Jennifer; Kipp, Benjamin; Kreil, David Philip; Lapunzina, Pablo; Li, Peng; Li, Quan-Zhen; Li, Weihua; Li, Zhiguang; Liang, Yu; Liu, Shaoqing; Liu, Zhichao; Ma, Charles; Marella, Narasimha; Martin-Arenas, Ruben; Megherbi, Dalila B.; Meng, Qingchang; Mieczkowski, Piotr A.; Morrison, Tom; Muzny, Donna; Ning, Baitang; Parsons, Barbara L.; Paweletz, Cloud P.; Pirooznia, Mehdi; Qu, Wubin; Raymond, Amelia; Rindler, Paul; Ringler, Rebecca; Sadikovic, Bekim; Scherer, Andreas; Schulze, Egbert; Sebra, Robert; Shaknovich, Rita; Shi, Qiang; Shi, Tieliu; Silla-Castro, Juan Carlos; Smith, Melissa; Lopez, Mario Solis; Song, Ping; Stetson, Daniel; Strahl, Maya; Stuart, Alan; Supplee, Julianna; Szankasi, Philippe; Tan, Haowen; Tang, Lin-ya; Tao, Yonghui; Thakkar, Shraddha; Thierry-Mieg, Danielle; Thierry-Mieg, Jean; Thodima, Venkat J.; Thomas, David; Tichy, Boris; Tom, Nikola; Garcia, Elena Vallespin; Verma, Suman; Walker, Kimbley; Wang, Charles; Wang, Junwen; Wang, Yexun; Wen, Zhining; Wirta, Valtteri; Wu, Leihong; Xiao, Chunlin; Xiao, Wenzhong; Xu, Shibei; Yang, Mary; Ying, Jianming; Yip, Shun H.; Zhang, Guangliang; Zhang, Sa; Zhao, Meiru; Zheng, Yuanting; Zhou, Xiaoyan; Mason, Christopher E.; Mercer, Timothy; Tong, Weida; Shi, Leming; Jones, Wendell; Xu, Joshua
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收藏Evaluating the analytical validity of circulating tumor DNA sequencing assays for precision oncology
Deveson, Ira W.; Gong, Binsheng; Lai, Kevin; LoCoco, Jennifer S.; Richmond, Todd A.; Schageman, Jeoffrey; Zhang, Zhihong; Novoradovskaya, Natalia; Willey, James C.; Jones, Wendell; Kusko, Rebecca; Chen, Guangchun; Madala, Bindu Swapna; Blackburn, James; Stevanovski, Igor; Bhandari, Ambica; Close, Devin; Conroy, Jeffrey; Hubank, Michael; Marella, Narasimha; Mieczkowski, Piotr A.; Qiu, Fujun; Sebra, Robert; Stetson, Daniel; Sun, Lihyun; Szankasi, Philippe; Tan, Haowen; Tang, Lin-ya; Arib, Hanane; Best, Hunter; Burgher, Blake; Bushel, Pierre R.; Casey, Fergal; Cawley, Simon; Chang, Chia-Jung; Choi, Jonathan; Dinis, Jorge; Duncan, Daniel; Eterovic, Agda Karina; Feng, Liang; Ghosal, Abhisek; Giorda, Kristina; Glenn, Sean; Happe, Scott; Haseley, Nathan; Horvath, Kyle; Hung, Li-Yuan; Jarosz, Mirna; Kushwaha, Garima; Li, Dan; Li, Quan-Zhen; Li, Zhiguang; Liu, Liang-Chun; Liu, Zhichao; Ma, Charles; Mason, Christopher E.; Megherbi, Dalila B.; Morrison, Tom; Pabon-Pena, Carlos; Pirooznia, Mehdi; Proszek, Paula Z.; Raymond, Amelia; Rindler, Paul; Ringler, Rebecca; Scherer, Andreas; Shaknovich, Rita; Shi, Tieliu; Smith, Melissa; Song, Ping; Strahl, Maya; Thodima, Venkat J.; Tom, Nikola; Verma, Suman; Wang, Jiashi; Wu, Leihong; Xiao, Wenzhong; Xu, Chang; Yang, Mary; Zhang, Guangliang; Zhang, Sa; Zhang, Yilin; Shi, Leming; Tong, Weida; Johann, Donald J., Jr.; Mercer, Timothy R.; Xu, Joshua
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收藏Using RNA sample titrations to assess microarray platform performance and normalization techniques
Shippy, Richard; Fulmer-Smentek, Stephanie; Jensen, Roderick V.; Jones, Wendell D.; Wolber, Paul K.; Johnson, Charles D.; Pine, P. Scott; Boysen, Cecilie; Guo, Xu; Chudin, Eugene; Sun, Yongming Andrew; Willey, James C.; Thierry-Mieg, Jean; Thierry-Mieg, Danielle; Setterquist, Robert A.; Wilson, Mike; Lucas, Anne Bergstrom; Novoradovskaya, Natalia; Papallo, Adam; Turpaz, Yaron; Baker, Shawn C.; Warrington, Janet A.; Shi, Leming; Herman, Damir
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收藏Universal Reference RNA as a standard for microarray experiments
Novoradovskaya, N; Whitfield, ML; Basehore, LS; Novoradovsky, A; Pesich, R; Usary, J; Karaca, M; Wong, WK; Aprelikova, O; Fero, M; Perou, CM; Botstein, D; Braman, J
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