未登录 Achieving robust somatic mutation detection with deep learning models derived from reference data sets of a cancer sample Sahraeian, Sayed Mohammad Ebrahim; Fang, Li Tai; Karagiannis, Konstantinos; Moos, Malcolm; Smith, Sean; Santana-Quintero, Luis; Xiao, Chunlin; Colgan, Michael; Hong, Huixiao; Mohiyuddin, Marghoob; Xiao, Wenming 分享 收藏
Assessing reproducibility of inherited variants detected with short-read whole genome sequencing 评估短读全基因组测序检测到的遗传变异的可重复性 Pan, Bohu; Ren, Luyao; Onuchic, Vitor; Guan, Meijian; Kusko, Rebecca; Bruinsma, Steve; Trigg, Len; Scherer, Andreas; Ning, Baitang; Zhang, Chaoyang; Glidewell-Kenney, Christine; Xiao, Chunlin; Donaldson, Eric; Sedlazeck, Fritz J.; Schroth, Gary; Yavas, Gokhan; Grunenwald, Haiying; Chen, Haodong; Meinholz, Heather; Meehan, Joe; Wang, Jing; Yang, Jingcheng; Foox, Jonathan; Shang, Jun; Miclaus, Kelci; Dong, Lianhua; Shi, Leming; Mohiyuddin, Marghoob; Pirooznia, Mehdi; Gong, Ping; Golshani, Rooz; Wolfinger, Russ; Lababidi, Samir; Sahraeian, Sayed Mohammad Ebrahim; Sherry, Steve; Han, Tao; Chen, Tao; Shi, Tieliu; Hou, Wanwan; Ge, Weigong; Zou, Wen; Guo, Wenjing; Bao, Wenjun; Xiao, Wenzhong; Fan, Xiaohui; Gondo, Yoichi; Yu, Ying; Zhao, Yongmei; Su, Zhenqiang; Liu, Zhichao; Tong, Weida; Xiao, Wenming; Zook, Justin M.; Zheng, Yuanting; Hong, Huixiao 分享 收藏
Hidden biases in germline structural variant detection Khayat, Michael M.; Sahraeian, Sayed Mohammad Ebrahim; Zarate, Samantha; Carroll, Andrew; Hong, Huixiao; Pan, Bohu; Shi, Leming; Gibbs, Richard A.; Mohiyuddin, Marghoob; Zheng, Yuanting; Sedlazeck, Fritz J. 分享 收藏
Establishing community reference samples, data and call sets for benchmarking cancer mutation detection using whole-genome sequencing Fang, Li Tai; Zhu, Bin; Zhao, Yongmei; Chen, Wanqiu; Yang, Zhaowei; Kerrigan, Liz; Langenbach, Kurt; de Mars, Maryellen; Lu, Charles; Idler, Kenneth; Jacob, Howard; Zheng, Yuanting; Ren, Luyao; Yu, Ying; Jaeger, Erich; Schroth, Gary P.; Abaan, Ogan D.; Talsania, Keyur; Lack, Justin; Shen, Tsai-Wei; Chen, Zhong; Stanbouly, Seta; Tran, Bao; Shetty, Jyoti; Kriga, Yuliya; Meerzaman, Daoud; Nguyen, Cu; Petitjean, Virginie; Sultan, Marc; Cam, Margaret; Mehta, Monika; Hung, Tiffany; Peters, Eric; Kalamegham, Rasika; Sahraeian, Sayed Mohammad Ebrahim; Mohiyuddin, Marghoob; Guo, Yunfei; Yao, Lijing; Song, Lei; Lam, Hugo Y. K.; Drabek, Jiri; Vojta, Petr; Maestro, Roberta; Gasparotto, Daniela; Koks, Sulev; Reimann, Ene; Scherer, Andreas; Nordlund, Jessica; Liljedahl, Ulrika; Jensen, Roderick, V; Pirooznia, Mehdi; Li, Zhipan; Xiao, Chunlin; Sherry, Stephen T.; Kusko, Rebecca; Moos, Malcolm; Donaldson, Eric; Tezak, Zivana; Ning, Baitang; Tong, Weida; Li, Jing; Duerken-Hughes, Penelope; Catalanotti, Claudia; Maheshwari, Shamoni; Shuga, Joe; Liang, Winnie S.; Keats, Jonathan; Adkins, Jonathan; Tassone, Erica; Zismann, Victoria; McDaniel, Timothy; Trent, Jeffrey; Foox, Jonathan; Butler, Daniel; Mason, Christopher E.; Hong, Huixiao; Shi, Leming; Wang, Charles; Xiao, Wenming 分享 收藏
A verified genomic reference sample for assessing performance of cancer panels detecting small variants of low allele frequency Jones, Wendell; Gong, Binsheng; Novoradovskaya, Natalia; Li, Dan; Kusko, Rebecca; Richmond, Todd A.; Johann, Donald J., Jr.; Bisgin, Halil; Sahraeian, Sayed Mohammad Ebrahim; Bushel, Pierre R.; Pirooznia, Mehdi; Wilkins, Katherine; Chierici, Marco; Bao, Wenjun; Basehore, Lee Scott; Lucas, Anne Bergstrom; Burgess, Daniel; Butler, Daniel J.; Cawley, Simon; Chang, Chia-Jung; Chen, Guangchun; Chen, Tao; Chen, Yun-Ching; Craig, Daniel J.; Del Pozo, Angela; Foox, Jonathan; Francescatto, Margherita; Fu, Yutao; Furlanello, Cesare; Giorda, Kristina; Grist, Kira P.; Guan, Meijian; Hao, Yingyi; Happe, Scott; Hariani, Gunjan; Haseley, Nathan; Jasper, Jeff; Jurman, Giuseppe; Kreil, David Philip; Labaj, Pawel; Lai, Kevin; Li, Jianying; Li, Quan-Zhen; Li, Yulong; Li, Zhiguang; Liu, Zhichao; Lopez, Mario Solis; Miclaus, Kelci; Miller, Raymond; Mittal, Vinay K.; Mohiyuddin, Marghoob; Pabon-Pena, Carlos; Parsons, Barbara L.; Qiu, Fujun; Scherer, Andreas; Shi, Tieliu; Stiegelmeyer, Suzy; Suo, Chen; Tom, Nikola; Wang, Dong; Wen, Zhining; Wu, Leihong; Xiao, Wenzhong; Xu, Chang; Yu, Ying; Zhang, Jiyang; Zhang, Yifan; Zhang, Zhihong; Zheng, Yuanting; Mason, Christopher E.; Willey, James C.; Tong, Weida; Shi, Leming; Xu, Joshua 分享 收藏
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Structural variants in 3000 rice genomes Rommel Fuentes, Roven; Chebotarov, Dmytro; Duitama, Jorge; Smith, Sean; Fernando De la Hoz, Juan; Mohiyuddin, Marghoob; Wing, Rod A.; McNally, Kenneth L.; Tatarinova, Tatiana; Grigoriev, Andrey; Mauleon, Ramil; Alexandrov, Nickolai 分享 收藏
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Circular DNA elements of chromosomal origin are common in healthy human somatic tissue Moller, Henrik Devitt; Mohiyuddin, Marghoob; Prada-Luengo, Inigo; Sailani, M. Reza; Halling, Jens Frey; Plomgaard, Peter; Maretty, Lasse; Hansen, Anders Johannes; Snyder, Michael P.; Pilegaard, Henriette; Lam, Hugo Y. K.; Regenberg, Birgitte 分享 收藏
Gaining comprehensive biological insight into the transcriptome by performing a broad-spectrum RNA-seq analysis Sahraeian, Sayed Mohammad Ebrahim; Mohiyuddin, Marghoob; Sebra, Robert; Tilgner, Hagen; Afshar, Pegah T.; Au, Kin Fai; Asadi, Narges Bani; Gerstein, Mark B.; Wong, Wing Hung; Snyder, Michael P.; Schadt, Eric; Lam, Hugo Y. K. 分享 收藏
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svclassify: a method to establish benchmark structural variant calls Parikh, Hemang; Mohiyuddin, Marghoob; Lam, Hugo Y. K.; Iyer, Hariharan; Chen, Desu; Pratt, Mark; Bartha, Gabor; Spies, Noah; Losert, Wolfgang; Zook, Justin M.; Salit, Marc 分享 收藏
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An ensemble approach to accurately detect somatic mutations using SomaticSeq Fang, Li Tai; Afshar, Pegah Tootoonchi; Chhibber, Aparna; Mohiyuddin, Marghoob; Fan, Yu; Mu, John C.; Gibeling, Greg; Barr, Sharon; Asadi, Narges Bani; Gerstein, Mark B.; Koboldt, Daniel C.; Wang, Wenyi; Wong, Wing H.; Lam, Hugo Y. K. 分享 收藏
Analysis of deletion breakpoints from 1,092 humans reveals details of mutation mechanisms (vol 6, 7256, 2015) Abyzov, Alexej; Li, Shantao; Kim, Daniel Rhee; Mohiyuddin, Marghoob; Stuetz, Adrian M.; Parrish, Nicholas F.; Mu, Xinmeng Jasmine; Clark, Wyatt; Chen, Ken; Hurles, Matthew; Korbel, Jan O.; Lam, Hugo Y. K.; Lee, Charles; Gerstein, Mark B. 分享 收藏
Analysis of deletion breakpoints from 1,092 humans reveals details of mutation mechanisms Abyzov, Alexej; Li, Shantao; Kim, Daniel Rhee; Mohiyuddin, Marghoob; Stuetz, Adrian M.; Parrish, Nicholas F.; Mu, Xinmeng Jasmine; Clark, Wyatt; Chen, Ken; Hurles, Matthew; Korbel, Jan O.; Lam, Hugo Y. K.; Lee, Charles; Gerstein, Mark B. 分享 收藏
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