Jianyang Zeng - Publications, H-index & Citations

Jianyang Zeng

Tsinghua University

37H指数

176论文数

6.3K被引数

收录论文 28

发表时间

High-accuracy protein complex structure modeling based on sequence-derived structure complementarity 基于序列衍生的结构互补性的高精度蛋白质复合物结构建模

Nature Communications

IF15.7

2025-11-19

OAAI

Minghua Hou; Yuhao Xia; Pengcheng Wang; Zexin lv; Dongliang Hou; Xiaogen Zhou; Jianyang Zeng; Guijun Zhang

Des-γ-carboxy Prothrombin in hepatocellular carcinoma post-operative recurrence risk evaluation

COMMUNICATIONS MEDICINE

IF6.3

2025-03-06

OAAI

Pan, Xinting; Zhou, Yang; Li, Zhenli; Guo, Pengfei; Zeng, Jianyang; Dong, Xiuqing; Hu, En; Qiu, Liman; Cai, Zhixiong; Chen, Geng; Liu, Xiaolong

Modeling gene interactions in polygenic prediction via geometric deep learning

GENOME RESEARCH

IF5.5

2024-11-19

OAAI

Li, Han; Zeng, Jianyang; Snyder, Michael P.; Zhang, Sai

Analyzing Large-Scale Single-Cell RNA-Seq Data Using Coreset

IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS

IF3.4

2024-11-01

PREAI

Usman, Khalid; Wan, Fangping; Zhao, Dan; Peng, Jian; Zeng, Jianyang

From Static to Dynamic Structures: Improving Binding Affinity Prediction with Graph-Based Deep Learning 从静态结构到动态结构: 使用基于图的深度学习改进绑定亲和力预测

ADVANCED SCIENCE

IF14.1

2024-08-29

OAAI

Min, Yaosen; Wei, Ye; Wang, Peizhuo; Wang, Xiaoting; Li, Han; Wu, Nian; Bauer, Stefan; Zheng, Shuxin; Shi, Yu; Wang, Yingheng; Wu, Ji; Zhao, Dan; Zeng, Jianyang

Network-based screening identifies sitagliptin as an antitumor drug targeting dendritic cells

JOURNAL FOR IMMUNOTHERAPY OF CANCER

IF10.6

2024-03-07

OAAI

Ng, Ian-Ian; Zhang, Jiaqi; Tian, Tingzhong; Peng, Qi; Huang, Zheng; Xiao, Kaimin; Yao, Xiyue; Ng, Lui; Zeng, Jianyang; Tang, Haidong

Deciphering driver regulators of cell fate decisions from single-cell transcriptomics data with CEFCON

NATURE COMMUNICATIONS

IF15.7

2023-12-20

OAAI

Wang, Peizhuo; Wen, Xiao; Li, Han; Lang, Peng; Li, Shuya; Lei, Yipin; Shu, Hantao; Gao, Lin; Zhao, Dan; Zeng, Jianyang

A knowledge-guided pre-training framework for improving molecular representation learning

NATURE COMMUNICATIONS

IF15.7

2023-11-21

OAAI

Li, Han; Zhang, Ruotian; Min, Yaosen; Ma, Dacheng; Zhao, Dan; Zeng, Jianyang

MolSHAP: Interpreting Quantitative Structure-Activity Relationships Using Shapley Values of R-Groups

JOURNAL OF CHEMICAL INFORMATION AND MODELING

IF5.3

2023-08-16

PREAI

Tian, Tingzhong; Li, Shuya; Fang, Meng; Zhao, Dan; Zeng, Jianyang

PocketAnchor: Learning structure-based pocket representations for protein-ligand interaction prediction

CELL SYSTEMS

IF7.7

2023-08-01

OAAI

Li, Shuya; Tian, Tingzhong; Zhang, Ziting; Zou, Ziheng; Zhao, Dan; Zeng, Jianyang

Characterizing the interaction conformation between T-cell receptors and epitopes with deep learning

NATURE MACHINE INTELLIGENCE

IF23.9

2023-03-27

PREAI

Peng, Xingang; Lei, Yipin; Feng, Peiyuan; Jia, Lemei; Ma, Jianzhu; Zhao, Dan; Zeng, Jianyang

DrugAl: a multi -view deep learning model for predicting drug-target activating/inhibiting mechanisms

BRIEFINGS IN BIOINFORMATICS

IF7.7

2022-12-16

PREAI

Zhang, Siqin; Yang, Kuo; Liu, Zhenhong; Lai, Xinxing; Yang, Zhen; Zeng, Jianyang Michael; Li, Shao

A community challenge for a pancancer drug mechanism of action inference from perturbational profile data

CELL REPORTS MEDICINE

IF10.6

2022-01-01

OAAI

Douglass, Eugene F.; Allaway, Robert J.; Szalai, Bence; Wang, Wenyu; Tian, Tingzhong; Fernandez-Torras, Adria; Realubit, Ron; Karan, Charles; Zheng, Shuyu; Pessia, Alberto; Tanoli, Ziaurrehman; Jafari, Mohieddin; Wan, Fangping; Li, Shuya; Xiong, Yuanpeng; Duran-Frigola, Miquel; Bertoni, Martino; Badia-I-Mompel, Pau; Mateo, Lidia; Guitart-Pla, Oriol; Chung, Verena; Tang, Jing; Zeng, Jianyang; Aloy, Patrick; Saez-Rodriguez, Julio; Guinney, Justin; Gerhard, Daniela S.; Califano, Andrea

FordNet: Recommending traditional Chinese medicine formula via deep neural network integrating phenotype and molecule FordNet: 通过整合表型和分子的深度神经网络推荐中药配方

PHARMACOLOGICAL RESEARCH

IF10.5

2021-11-01

PREAI

Zhou, Wuai; Yang, Kuo; Zeng, Jianyang; Lai, Xinxing; Wang, Xin; Ji, Chaofan; Li, Yan; Zhang, Peng; Li, Shao

A deep-learning framework for multi-level peptide-protein interaction prediction

NATURE COMMUNICATIONS

IF15.7

2021-09-15

OAAI

Lei, Yipin; Li, Shuya; Liu, Ziyi; Wan, Fangping; Tian, Tingzhong; Li, Shao; Zhao, Dan; Zeng, Jianyang

Modeling gene regulatory networks using neural network architectures 使用神经网络架构对基因调控网络进行建模

NATURE COMPUTATIONAL SCIENCE

IF18.3

2021-07-22

PREAI

Shu, Hantao; Zhou, Jingtian; Lian, Qiuyu; Li, Han; Zhao, Dan; Zeng, Jianyang; Ma, Jianzhu

Crowdsourced mapping of unexplored target space of kinase inhibitors

NATURE COMMUNICATIONS

IF15.7

2021-06-03

OAAI

Cichonska, Anna; Ravikumar, Balaguru; Allaway, Robert J.; Wan, Fangping; Park, Sungjoon; Isayev, Olexandr; Li, Shuya; Mason, Michael; Lamb, Andrew; Tanoli, Ziaurrehman; Jeon, Minji; Kim, Sunkyu; Popova, Mariya; Capuzzi, Stephen; Zeng, Jianyang; Dang, Kristen; Koytiger, Gregory; Kang, Jaewoo; Wells, Carrow I.; Willson, Timothy M.; Oprea, Tudor I.; Schlessinger, Avner; Drewry, David H.; Stolovitzky, Gustavo; Wennerberg, Krister; Guinney, Justin; Aittokallio, Tero; Tan, Mehmet; Huang, Chih-Han; Shih, Edward S. C.; Chen, Tsai-Min; Wu, Chih-Hsun; Fang, Wei-Quan; Chen, Jhih-Yu; Hwang, Ming-Jing; Wang, Xiaokang; Ben Guebila, Marouen; Shamsaei, Behrouz; Singh, Sourav; Nguyen, Thin; Karimi, Mostafa; Wu, Di; Wang, Zhangyang; Shen, Yang; Ozturk, Hakime; Ozkirimli, Elif; Ozgur, Arzucan; Lim, Hansaim; Xie, Lei; Kanev, Georgi K.; Kooistra, Albert J.; Westerman, Bart A.; Terzopoulos, Panagiotis; Ntagiantas, Konstantinos; Fotis, Christos; Alexopoulos, Leonidas; Boeckaerts, Dimitri; Stock, Michiel; De Baets, Bernard; Briers, Yves; Luo, Yunan; Hu, Hailin; Peng, Jian; Dogan, Tunca; Rifaioglu, Ahmet S.; Atas, Heval; Atalay, Rengul Cetin; Atalay, Volkan; Martin, Maria J.; Lee, Junhyun; Yun, Seongjun; Kim, Bumsoo; Chang, Buru; Turu, Gabor; Misak, Adam; Szalai, Bence; Hunyady, Laszlo; Lienhard, Matthias; Prasse, Paul; Bachmann, Ivo; Ganzlin, Julia; Barel, Gal; Herwig, Ralf; Orsolic, Davor; Lucic, Bono; Stepanic, Visnja; Smuc, Tomislav

An integrative drug repositioning framework discovered a potential therapeutic agent targeting COVID-19

Signal Transduction and Targeted Therapy

IF52.7

2021-04-24

OAAI

Yiyue Ge; Tingzhong Tian; Suling Huang; Fangping Wan; Jingxin Li; Shuya Li; Xiaoting Wang; Hui Yang; Lixiang Hong; Nian Wu; Enming Yuan; Yunan Luo; Lili Cheng; Chengliang Hu; Yipin Lei; Hantao Shu; Xiaolong Feng; Ziyuan Jiang; Yunfu Wu; Ying Chi; Xiling Guo; Lunbiao Cui; Liang Xiao; Zeng Li; Chunhao Yang; Zehong Miao; Ligong Chen; Haitao Li; Hainian Zeng; Dan Zhao; Fengcai Zhu; Xiaokun Shen; Jianyang Zeng

Modeling multi-species RNA modification through multi-task curriculum learning

NUCLEIC ACIDS RESEARCH

IF13.1

2021-03-21

OAAI

Xiong, Yuanpeng; He, Xuan; Zhao, Dan; Tian, Tingzhong; Hong, Lixiang; Jiang, Tao; Zeng, Jianyang

Characterizing RNA Pseudouridylation by Convolutional Neural Networks

GENOMICS PROTEOMICS & BIOINFORMATICS

IF7.9

2021-02-23

OAAI

He, Xuan; Zhang, Sai; Zhang, Yanqing; Lei, Zhixin; Jiang, Tao; Zeng, Jianyang

研究方向