Atsushi Suenaga - Publications, H-index & Citations

Atsushi Suenaga

riken

24H指数

112论文数

1.7K被引数

收录论文 18

发表时间

Structural and Functional Basis of a Role for CRKL in a Fibroblast Growth Factor 8-Induced Feed-Forward Loop

MOLECULAR AND CELLULAR BIOLOGY

IF2.7

2023-03-21

OAAI

Seo, Ji-Heui; Suenaga, Atsushi; Hatakeyama, Mariko; Taiji, Makoto; Imamoto, Akira

RNAapt3D: RNA aptamer 3D-structural modeling database

BIOPHYSICAL JOURNAL

IF3.1

2022-12-01

OAAI

Sato, Ryuma; Suzuki, Koji; Yasuda, Yuichi; Suenaga, Atsushi; Fukui, Kazuhiko

All-atom molecular dynamics analysis of multi-peptide systems reproduces peptide solubility in line with experimental observations

SCIENTIFIC REPORTS

IF3.9

2016-01-28

OAAI

Kuroda, Yutaka; Suenaga, Atsushi; Sato, Yuji; Kosuda, Satoshi; Taiji, Makoto

Histo-Blood Group Antigen-Like Substances of Human Enteric Bacteria as Specific Adsorbents for Human Noroviruses

JOURNAL OF VIROLOGY

IF3.8

2013-09-01

176

OAAI

Miura, Takayuki; Sano, Daisuke; Suenaga, Atsushi; Yoshimura, Takeshi; Fuzawa, Miyu; Nakagomi, Toyoko; Nakagomi, Osamu; Okabe, Satoshi

High-Performance Drug Discovery: Computational Screening by Combining Docking and Molecular Dynamics Simulations

BIOPHYSICAL JOURNAL

IF3.1

2010-01-01

OAAI

Okimoto, Noriaki; Futatsugi, Noriyuki; Fuji, Hideyoshi; Suenaga, Atsushi; Morimoto, Gentaro; Yanai, Ryoko; Ohno, Yosuske; Narumi, Tetsu; Taiji, Makoto

Reversible hydrogel formation driven by protein-peptide-specific interaction and chondrocyte entrapment

BIOMATERIALS

IF12.9

2010-01-01

PREAI

Ito, Fuyu; Usui, Kengo; Kawahara, Daigo; Suenaga, Atsushi; Maki, Tei; Kidoaki, Satoru; Suzuki, Harukazu; Taiji, Makoto; Itoh, Masayoshi; Hayashizaki, Yoshihide; Matsuda, Takehisa

High-Performance Drug Discovery: Computational Screening by Combining Docking and Molecular Dynamics Simulations

plos biology

IF3.6

2009-10-09

160

OAAI

Okimoto, Noriaki; Futatsugi, Noriyuki; Fuji, Hideyoshi; Suenaga, Atsushi; Morimoto, Gentaro; Yanai, Ryoko; Ohno, Yousuke; Narumi, Tetsu; Taiji, Makoto

Mutation of epidermal growth factor receptor is associated with MIG6 expression

FEBS JOURNAL

IF4.2

2009-08-27

OAAI

Nagashima, Takeshi; Ushikoshi-Nakayama, Ryoko; Suenaga, Atsushi; Ide, Kaori; Yumoto, Noriko; Naruo, Yoshimi; Takahashi, Kaoru; Saeki, Yuko; Taiji, Makoto; Tanaka, Hiroshi; Tsai, Shih-Feng; Hatakeyama, Mariko

Molecular Dynamics Simulations Reveal that Tyr-317 Phosphorylation Reduces Shc Binding Affinity for Phosphotyrosyl Residues of Epidermal Growth Factor Receptor

BIOPHYSICAL JOURNAL

IF3.1

2009-03-01

OAAI

Suenaga, Atsushi; Hatakeyama, Mariko; Kiyatkin, Anatoly B.; Radhakrishnan, Ravi; Taiji, Makoto; Kholodenko, Boris N.

Folding dynamics of 10-residue β-hairpin peptide chignolin

CHEMISTRY-AN ASIAN JOURNAL

IF3.3

2007-04-27

PREAI

Suenaga, Atsushi; Narumi, Tetsu; Futatsugi, Noriyuki; Yanai, Ryoko; Ohno, Yousuke; Okimoto, Noriaki; Taiji, Makoto

Crystal structure of the Rac activator, Asef, reveals its autoinhibitory mechanism

JOURNAL OF BIOLOGICAL CHEMISTRY

IF3.9

2007-02-01

OAAI

Murayama, Kazutaka; Shirouzu, Mikako; Kawasaki, Yoshihiro; Kato-Murayama, Miyuki; Hanawa-Suetsugu, Kyoko; Sakamoto, Ayako; Katsura, Yasuhiro; Suenaga, Atsushi; Toyama, Mitsutoshi; Terada, Takaho; Taiji, Makoto; Akiyama, Tetsu; Yokoyama, Shigeyuki

Bead-like passage of chloride ions through ClC chloride channels 氯离子通过ClC氯离子通道的珠状通道

BIOPHYSICAL CHEMISTRY

IF2.2

2006-03-01

PREAI

Suenaga, A; Yeh, JZ; Taiji, M; Toyama, A; Takeuchi, H; Son, MY; Takayama, K; Iwamoto, M; Sato, I; Narahashi, T; Konagaya, A; Goto, K

Novel mechanism of interaction of p85 subunit of phosphatidylinositol 3-kinase and ErbB3 receptor-derived phosphotyrosyl peptides

JOURNAL OF BIOLOGICAL CHEMISTRY

IF3.9

2005-01-01

PREAI

Suenaga, A; Takada, N; Hatakeyama, M; Ichikawa, M; Yu, XM; Tomii, K; Okimoto, N; Futatsugi, N; Narumi, T; Shirouzu, M; Yokoyama, S; Konagaya, A; Taiji, M

Cooperative motions of protein and hydration water molecules: Molecular dynamics study of scytalone dehydratase

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

IF15.6

2004-09-21

PREAI

Okimoto, N; Nakamura, T; Suenaga, A; Futatsugi, N; Hirano, Y; Yamaguchi, I; Ebisuzaki, T

Tyr-317 phosphorylation increases shc structural rigidity and reduces coupling of domain motions remote from the phosphorylation site as revealed by molecular dynamics simulations

JOURNAL OF BIOLOGICAL CHEMISTRY

IF3.9

2004-02-01

OAAI

Suenaga, A; Kiyatkin, AB; Hatakeyama, M; Futatsugi, N; Okimoto, N; Hirano, Y; Narumi, T; Kawai, A; Susukita, R; Koishi, T; Furusawa, H; Yasuoka, K; Takada, N; Ohno, Y; Taiji, M; Ebisuzaki, T; Hoek, JB; Konagaya, A; Kholodenko, BN

Molecular origin of the cation selectivity in OmpF porin: single channel conductances vs. free energy calculation

BIOPHYSICAL CHEMISTRY

IF2.2

2003-07-01

PREAI

Danelon, C; Suenaga, A; Winterhalter, M; Yamato, I

Computational studies on prion proteins:: Effect of Ala117 → Val mutation

BIOPHYSICAL JOURNAL

IF3.1

2002-05-01

OAAI

Okimoto, N; Yamanaka, K; Suenaga, A; Hata, M; Hoshino, T