Richard S. Johnson - Publications, H-index & Citations

Richard S. Johnson

Department of Genome Sciences

55H指数

173论文数

1.5W被引数

收录论文 55

发表时间

A transformer model for de novo sequencing of data-independent acquisition mass spectrometry data 用于数据独立的采集质谱数据从头测序的transformer模型

Nature Methods

IF32.1

2025-07-01

OAAI

Justin Sanders; Bo Wen; Paul A. Rudnick; Richard S. Johnson; Christine C. Wu; Michael Riffle; Sewoong Oh; Michael J. MacCoss; William Stafford Noble

Data-independent acquisition proteomic analysis of the brain microvasculature in Alzheimer's disease identifies major pathways of dysfunction and upregulation of cytoprotective responses

FLUIDS AND BARRIERS OF THE CNS

IF6.2

2024-10-21

OAAI

Erickson, Michelle A.; Johnson, Richard S.; Damodarasamy, Mamatha; MacCoss, Michael J.; Keene, C. Dirk; Banks, William A.; Reed, May J.

A Framework for Quality Control in Quantitative Proteomics

JOURNAL OF PROTEOME RESEARCH

IF3.6

2024-09-09

PREAI

Tsantilas, Kristine A.; Merrihew, Gennifer E.; Robbins, Julia E.; Johnson, Richard S.; Park, Jea; Plubell, Deanna L.; Canterbury, Jesse D.; Huang, Eric; Riffle, Michael; Sharma, Vagisha; MacLean, Brendan X.; Eckels, Josh; Wu, Christine C.; Bereman, Michael S.; Spencer, Sandra E.; Hoofnagle, Andrew N.; MacCoss, Michael J.

MBNL1 Regulates Programmed Postnatal Switching Between Regenerative and Differentiated Cardiac States

CIRCULATION

IF38.6

2024-06-04

OAAI

Bailey, Logan R. J.; Bugg, Darrian; Reichardt, Isabella M.; Ortac, C. Dessiree; Nagle, Abigail; Gunaje, Jagadambika; Martinson, Amy; Johnson, Richard; Maccoss, Michael J.; Sakamoto, Tomoya; Kelly, Daniel P.; Regnier, Michael; Davis, Jennifer

GEROSCIENCE

IF5.4

2022-04-13

OAAI

Whitson, Jeremy A.; Johnson, Richard; Wang, Lu; Bammler, Theo K.; Imai, Shin-Ichiro; Zhang, Huiliang; Fredrickson, Jeanne; Latorre-Esteves, Elena; Bitto, Alessandro; MacCoss, Michael J.; Rabinovitch, Peter S.

Activity dependent dissociation of the Homer1 interactome

SCIENTIFIC REPORTS

IF3.9

2022-02-25

OAAI

Stillman, Mason; Lautz, Jonathan D.; Johnson, Richard S.; MacCoss, Michael J.; Smith, Stephen E. P.

The metabolome as a biomarker of aging in Drosophila melanogaster

AGING CELL

IF7.1

2022-01-12

OAAI

Zhao, Xiaqing; Golic, Forrest T.; Harrison, Benjamin R.; Manoj, Meghna; Hoffman, Elise, V; Simon, Neta; Johnson, Richard; MacCoss, Michael J.; McIntyre, Lauren M.; Promislow, Daniel E. L.

De novo design of tyrosine and serine kinase-driven protein switches

NATURE STRUCTURAL & MOLECULAR BIOLOGY

IF10.1

2021-09-13

OAAI

Woodall, Nicholas B.; Weinberg, Zara; Park, Jesslyn; Busch, Florian; Johnson, Richard S.; Feldbauer, Mikayla J.; Murphy, Michael; Ahlrichs, Maggie; Yousif, Issa; MacCoss, Michael J.; Wysocki, Vicki H.; El-Samad, Hana; Baker, David

Identification of Actin Filament-Associated Proteins in Giardia lamblia

MICROBIOLOGY SPECTRUM

IF3.8

2021-09-03

OAAI

Steele-Ogus, Melissa C.; Johnson, Richard S.; MacCoss, Michael J.; Paredez, Alexander R.

A proteomic approach reveals possible molecular mechanisms and roles for endosymbiotic bacteria in begomovirus transmission by whiteflies

GIGASCIENCE

IF3.9

2020-11-13

OAAI

Kliot, Adi; Johnson, Richard S.; MacCoss, Michael J.; Kontsedalov, Svetlana; Lebedev, Galina; Czosnek, Henryk; Heck, Michelle; Ghanim, Murad

RNA aptamer capture of macromolecular complexes for mass spectrometry analysis

NUCLEIC ACIDS RESEARCH

IF13.1

2020-07-01

OAAI

Ray, Judhajeet; Kruse, Angela; Ozer, Abdullah; Kajitani, Takuya; Johnson, Richard; MacCoss, Michael; Heck, Michelle; Lis, John T.

Peptidomics Approaches for the Identification of Bioactive Molecules from Diaphorina citri 鉴定来自Diaphorina citri的生物活性分子的Peptidomics方法

JOURNAL OF PROTEOME RESEARCH

IF3.6

2020-02-10

PREAI

Fleites, Laura A.; Johnson, Richard; Kruse, Angela R.; Nachman, Ronald J.; Hall, David G.; MacCoss, Michael; Heck, Michelle L.

Assessing Protein Sequence Database Suitability Using De Novo Sequencing 使用从头测序评估蛋白质序列数据库的适用性

MOLECULAR & CELLULAR PROTEOMICS

IF5.5

2020-01-01

OAAI

Johnson, Richard S.; Searle, Brian C.; Nunn, Brook L.; Gilmore, Jason M.; Phillips, Molly; Amemiya, Chris T.; Heck, Michelle; MacCoss, Michael J.

Improving Precursor Selectivity in Data-Independent Acquisition Using Overlapping Windows 使用重叠窗口提高数据独立采集中的前体选择性

JOURNAL OF THE AMERICAN SOCIETY FOR MASS SPECTROMETRY

IF2.7

2019-01-22

102

OAAI

Amodei, Dario; Egertson, Jarrett; MacLean, Brendan X.; Johnson, Richard; Merrihew, Gennifer E.; Keller, Austin; Marsh, Don; Vitek, Olga; Mallick, Parag; MacCoss, Michael J.

Time-resolved interaction proteomics of the GIGANTEA protein under diurnal cycles in Arabidopsis

FEBS LETTERS

IF3

2018-12-28

OAAI

Krahmer, Johanna; Goralogia, Greg S.; Kubota, Akane; Zardilis, Argyris; Johnson, Richard S.; Song, Young Hun; MacCoss, Michael J.; Le Bihan, Thierry; Halliday, Karen J.; Imaizumi, Takato; Millar, Andrew J.

The Interaction Dynamics of Two Potato Leafroll Virus Movement Proteins Affects Their Localization to the Outer Membranes of Mitochondria and Plastids

VIRUSES-BASEL

IF3.5

2018-10-26

OAAI

DeBlasio, Stacy L.; Xu, Yi; Johnson, Richard S.; Rebelo, Ana Rita; MacCoss, Michael J.; Gray, Stewart M.; Heck, Michelle

Candidatus Liberibacter asiaticus Minimally Alters Expression of Immunity and Metabolism Proteins in Hemolymph of Diaphorina citri, the Insect Vector of Huanglongbing

JOURNAL OF PROTEOME RESEARCH

IF3.6

2018-08-14

PREAI

Kruse, Angela; Ramsey, John S.; Johnson, Richard; Hall, David G.; MacCoss, Michael J.; Heck, Michelle

A Stem-Loop Structure in Potato Leafroll Virus Open Reading Frame 5 (ORF5) Is Essential for Readthrough Translation of the Coat Protein ORF Stop Codon 700 Bases Upstream

JOURNAL OF VIROLOGY

IF3.8

2018-06-01

OAAI

Xu, Yi; Ju, Ho-Jong; DeBlasio, Stacy; Carino, Elizabeth J.; Johnson, Richard; MacCoss, Michael J.; Heck, Michelle; Miller, W. Allen; Gray, Stewart M.

TCP4-dependent induction of CONSTANS transcription requires GIGANTEA in photoperiodic flowering in Arabidopsis

PLOS GENETICS

IF3.7

2017-06-19

103

OAAI

Kubota, Akane; Ito, Shogo; Shim, Jae Sung; Johnson, Richard S.; Song, Yong Hun; Breton, Ghislain; Goralogia, Greg S.; Kwon, Michael S.; Cintron, Dianne Laboy; Koyama, Tomotsugu; Ohme-Takagi, Masaru; Pruneda-Paz, Jose L.; Kay, Steve A.; MacCoss, Michael J.; Imaizumi, Takato

The Ndc80 complex bridges two Dam1 complex rings

ELIFE

IF0

2017-02-13

OAAI

Kim, Jae Ook; Zelter, Alex; Umbreit, Neil T.; Bollozos, Athena; Riffle, Michael; Johnson, Richard; MacCoss, Michael J.; Asbury, Charles L.; Davis, Trisha N.

研究方向