Hamim Zafar - Publications, H-index & Citations

Hamim Zafar

department of computer science and engineering

15H指数

63论文数

1.0K被引数

收录论文 18

发表时间

multiHIVE: hierarchical multimodal deep generative modeling for single-cell multiomics multiHIVE：单细胞多组学的层次化多模态深度生成建模

BMC Bioinformatics

IF3.3

2026-09-07

OAAI

Musale Krushna Pavan; Anirudh Nanduri; Kushagra Pandey; Hamim Zafar

Charting spatial ligand-target activity using Renoir 利用Renoir绘制空间配体-靶点活性图谱

Nature Communications

IF15.7

2026-05-05

OAAI

Narein Rao; Tanush Kumar; Dina Kazemi; Shaozhi Hou; Atefeh Khakpoor; Merrin Mary Eapen; Rhea Pai; Liang Qiao; Archita Mishra; Florent Ginhoux; Jerry Kok Yen Chan; Jacob George; Ankur Sharma; Hamim Zafar

Faster Amylin Aggregation on Fibrillar Collagen I Hastens Diabetic Progression through β-Cell Death and Loss of Function 在纤维状胶原蛋白I上加速的amylin聚集通过β细胞死亡和功能丧失加速糖尿病进展

JOURNAL OF THE AMERICAN CHEMICAL SOCIETY

IF15.6

2025-04-29

PREAI

Hazari, Md Asrafuddoza; Kannan, Gautam; Dasgupta, Subrata; Pavan, Musale Krushna; Jha, Akash Kumar; Sultana, Farhin; Pujahari, Soumya Ranjan; Singh, Simran; Dutta, Sarbajeet; Pydi, Sai Prasad; Dutta, Sankhadeep; Zafar, Hamim; Bhaumik, Prasenjit; Kumar, Ashutosh; Sen, Shamik

Temporal Resolution of Single-Cell Transcriptomics and Epigenomics of Murine Pancreatic Islet in Diet-Induced Obesity

DIABETES

IF7.5

2024-06-14

PREAI

Singh, Simran; Musale, Krushna Pavan; Barella, Luiz F.; Shree, Ajita; Zafar, Hamim; Wess, Jurgen; Pydi, Sai Prasad

Stiffness-dependent MSC homing and differentiation into CAFs - implications for breast cancer invasion

JOURNAL OF CELL SCIENCE

IF3.6

2024-01-15

OAAI

Saxena, Neha; Chakraborty, Soura; Dutta, Sarbajeet; Bhardwaj, Garvit; Karnik, Nupur; Shetty, Omshree; Jadhav, Sameer; Zafar, Hamim; Sen, Shamik

scDREAMER for atlas-level integration of single-cell datasets using deep generative model paired with adversarial classifier

NATURE COMMUNICATIONS

IF15.7

2023-11-27

OAAI

Shree, Ajita; Pavan, Musale Krushna; Zafar, Hamim

Thrombospondin 2 is a key determinant of fibrogenesis in non-alcoholic fatty liver disease

LIVER INTERNATIONAL

IF5.2

2023-11-27

OAAI

Kimura, Takefumi; Iwadare, Takanobu; Wakabayashi, Shun-ichi; Kuldeep, Seema; Nakajima, Tomoyuki; Yamazaki, Tomoo; Aomura, Daiki; Zafar, Hamim; Iwaya, Mai; Joshita, Satoru; Uehara, Takeshi; Pydi, Sai P.; Tanaka, Naoki; Umemura, Takeji

Molecular mechanism of synovial joint site specification and induction in developing vertebrate limbs 脊椎动物四肢发育中滑膜关节部位规范和诱导的分子机制

DEVELOPMENT

IF3.6

2023-06-30

OAAI

Yadav, Upendra S.; Biswas, Tathagata; Singh, Pratik N.; Gupta, Pankaj; Chakraborty, Soura; Delgado, Irene; Zafar, Hamim; Capellini, Terence D.; Torres, Miguel; Bandyopadhyay, Amitabha

Inference of cell state transitions and cell fate plasticity from single-cell with MARGARET

NUCLEIC ACIDS RESEARCH

IF13.1

2022-05-25

OAAI

Pandey, Kushagra; Zafar, Hamim

Single-cell lineage tracing by integrating CRISPR-Cas9 mutations with transcriptomic data

NATURE COMMUNICATIONS

IF15.7

2020-06-16

OAAI

Zafar, Hamim; Lin, Chieh; Bar-Joseph, Ziv

SiCloneFit: Bayesian inference of population structure, genotype, and phylogeny of tumor clones from single-cell genome sequencing data

GENOME RESEARCH

IF5.5

2019-10-18

OAAI

Zafar, Hamim; Navin, Nicholas; Chen, Ken; Nakhleh, Luay

Comments on the model parameters in SiFit: inferring tumor trees from single-cell sequencing data under finite-sites models

GENOME BIOLOGY

IF9.4

2019-05-16

OAAI

Zafar, Hamim; Tzen, Anthony; Navin, Nicholas; Chen, Ken; Nakhleh, Luay

Matrilysin/MMP-7 Cleavage of Perlecan/HSPG2 Complexed with Semaphorin 3A Supports FAK-Mediated Stromal Invasion by Prostate Cancer Cells

SCIENTIFIC REPORTS

IF3.9

2018-05-08

OAAI

Grindel, Brian J.; Martinez, Jerahme R.; Tellman, Tristen V.; Harrington, Daniel A.; Zafar, Hamim; Nakhleh, Luay; Chung, Leland W.; Farach-Carson, Mary C.

SiFit: inferring tumor trees from single-cell sequencing data under finite-sites models SiFit: 在有限位点模型下从单细胞测序数据推断肿瘤树

GENOME BIOLOGY

IF9.4

2017-09-19

113

OAAI

Zafar, Hamim; Tzen, Anthony; Navin, Nicholas; Chen, Ken; Nakhleh, Luay

Interplay between perlecan/HSPG2 and matrilysin/MMP-7 in the prostate cancer tumor microenvironment directs metastatic programming through focal adhesion kinase and FoxM1

CANCER RESEARCH

IF16.6

2016-07-15

PREAI