Gemma L. Holliday - Publications, H-index & Citations

Gemma L. Holliday

european molecular biology laboratory (embl)

28H指数

53论文数

5.4K被引数

收录论文 22

发表时间

Role of ammonia-lyases in the synthesis of the dithiomethylamine ligand during [FeFe]-hydrogenase maturation

JOURNAL OF BIOLOGICAL CHEMISTRY

IF3.9

2024-10-01

OAAI

Pagnier, Adrien; Balci, Batuhan; Shepard, Eric M.; Yang, Hao; Drena, Alex; Holliday, Gemma L.; Hoffman, Brian M.; Broderick, William E.; Broderick, Joan B.

A strategy for large-scale comparison of evolutionary- and reaction-based classifications of enzyme function 大规模比较基于进化和反应的酶功能分类的策略

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION

IF3.6

2020-05-25

OAAI

Holliday, Gemma L.; Brown, Shoshana D.; Mischel, David; Polacco, Benjamin J.; Babbitt, Patricia C.

A global analysis of function and conservation of catalytic residues in enzymes

JOURNAL OF BIOLOGICAL CHEMISTRY

IF3.9

2020-01-01

OAAI

Ribeiro, Antonio J. M.; Tyzack, Jonathan D.; Borkakoti, Neera; Holliday, Gemma L.; Thornton, Janet M.

A global view of structure-function relationships in the tautomerase superfamily 互变异构酶超家族中结构-功能关系的全局视图

JOURNAL OF BIOLOGICAL CHEMISTRY

IF3.9

2018-02-01

OAAI

Davidson, Rebecca; Baas, Bert-Jan; Akiva, Eyal; Holliday, Gemma L.; Polacco, Benjamin J.; LeVieux, Jake A.; Pullara, Collin R.; Zhang, Yan Jessie; Whitman, Christian P.; Babbitt, Patricia C.

Mechanism and Catalytic Site Atlas (M-CSA): a database of enzyme reaction mechanisms and active sites

NUCLEIC ACIDS RESEARCH

IF13.1

2017-11-02

148

OAAI

Ribeiro, Antonio J. M.; Holliday, Gemma L.; Furnham, Nicholas; Tyzack, Jonathan D.; Ferris, Katherine; Thornton, Janet M.

Biocuration in the structure-function linkage database: the anatomy of a superfamily (May, bax006, 2017)

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION

IF3.6

2017-05-24

OAAI

Holliday, Gemma L.; Brown, Shoshana D.; Akiva, Eyal; Mischel, David; Hicks, Michael A.; Morris, John H.; Huang, Conrad C.; Meng, Elaine C.; Pegg, Scott C. -H.; Ferrin, Thomas E.; Babbitt, Patricia C.

Biocuration in the structure-function linkage database: the anatomy of a superfamily

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION

IF3.6

2017-03-18

OAAI

Holliday, Gemma L.; Brown, Shoshana D.; Akiva, Eyal; Mischel, David; Hicks, Michael A.; Morris, John H.; Huang, Conrad C.; Meng, Elaine C.; Pegg, Scott C. -H.; Ferrin, Thomas E.; Babbitt, Patricia C.

InterPro in 2017-beyond protein family and domain annotations

NUCLEIC ACIDS RESEARCH

IF13.1

2016-11-29

1.2K

OAAI

Finn, Robert D.; Attwood, Teresa K.; Babbitt, Patricia C.; Bateman, Alex; Bork, Peer; Bridge, Alan J.; Chang, Hsin-Yu; Dosztanyi, Zsuzsanna; El-Gebali, Sara; Fraser, Matthew; Gough, Julian; Haft, David; Holliday, Gemma L.; Huang, Hongzhan; Huang, Xiaosong; Letunic, Ivica; Lopez, Rodrigo; Lu, Shennan; Marchler-Bauer, Aron; Mi, Huaiyu; Mistry, Jaina; Natale, Darren A.; Necci, Marco; Nuka, Gift; Orengo, Christine A.; Park, Youngmi; Pesseat, Sebastien; Piovesan, Damiano; Potter, Simon C.; Rawlings, Neil D.; Redaschi, Nicole; Richardson, Lorna; Rivoire, Catherine; Sangrador-Vegas, Amaia; Sigrist, Christian; Sillitoe, Ian; Smithers, Ben; Squizzato, Silvano; Sutton, Granger; Thanki, Narmada; Thomas, Paul D.; Tosatto, Silvio C. E.; Wu, Cathy H.; Xenarios, Ioannis; Yeh, Lai-Su; Young, Siew-Yit; Mitchell, Alex L.

Creating a specialist protein resource network: a meeting report for the protein bioinformatics and community resources retreat

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION

IF3.6

2015-07-11

OAAI

Babbitt, Patricia C.; Bagos, Pantelis G.; Bairoch, Amos; Bateman, Alex; Chatonnet, Arnaud; Chen, Mark Jinan; Craik, David J.; Finn, Robert D.; Gloriam, David; Haft, Daniel H.; Henrissat, Bernard; Holliday, Gemma L.; Isberg, Vignir; Kaas, Quentin; Landsman, David; Lenfant, Nicolas; Manning, Gerard; Nagano, Nozomi; Srinivasan, Narayanaswamy; O'Donovan, Claire; Pruitt, Kim D.; Sowdhamini, Ramanathan; Rawlings, Neil D.; Saier, Milton H., Jr.; Sharman, Joanna L.; Spedding, Michael; Tsirigos, Konstantinos D.; Vastermark, Ake; Vriend, Gerrit

The Confidence Information Ontology: a step towards a standard for asserting confidence in annotations

DATABASE-THE JOURNAL OF BIOLOGICAL DATABASES AND CURATION

IF3.6

2015-05-09

OAAI

Bastian, Frederic B.; Chibucos, Marcus C.; Gaudet, Pascale; Giglio, Michelle; Holliday, Gemma L.; Huang, Hong; Lewis, Suzanna E.; Niknejad, Anne; Orchard, Sandra; Poux, Sylvain; Skunca, Nives; Robinson-Rechavi, Marc

Key challenges for the creation and maintenance of specialist protein resources

PROTEINS-STRUCTURE FUNCTION AND BIOINFORMATICS

IF2.8

2015-04-22

OAAI

Holliday, Gemma L.; Bairoch, Amos; Bagos, Pantelis G.; Chatonnet, Arnaud; Craik, David J.; Finn, Robert D.; Henrissat, Bernard; Landsman, David; Manning, Gerard; Nagano, Nozomi; O'Donovan, Claire; Pruitt, Kim D.; Rawlings, Neil D.; Saier, Milton; Sowdhamini, Ramanathan; Spedding, Michael; Srinivasan, Narayanaswamy; Vriend, Gert; Babbitt, Patricia C.; Bateman, Alex

EC-BLAST: a tool to automatically search and compare enzyme reactions

NATURE METHODS

IF32.1

2014-01-12

103

OAAI

Rahman, Syed Asad; Cuesta, Sergio Martinez; Furnham, Nicholas; Holliday, Gemma L.; Thornton, Janet M.

The Catalytic Site Atlas 2.0: cataloging catalytic sites and residues identified in enzymes

NUCLEIC ACIDS RESEARCH

IF13.1

2013-12-06

150

OAAI

Furnham, Nicholas; Holliday, Gemma L.; de Beer, Tjaart A. P.; Jacobsen, Julius O. B.; Pearson, William R.; Thornton, Janet M.

The Structure-Function Linkage Database

NUCLEIC ACIDS RESEARCH

IF13.1

2013-11-23

215

OAAI

Akiva, Eyal; Brown, Shoshana; Almonacid, Daniel E.; Barber, Alan E., II; Custer, Ashley F.; Hicks, Michael A.; Huang, Conrad C.; Lauck, Florian; Mashiyama, Susan T.; Meng, Elaine C.; Mischel, David; Morris, John H.; Ojha, Sunil; Schnoes, Alexandra M.; Stryke, Doug; Yunes, Jeffrey M.; Ferrin, Thomas E.; Holliday, Gemma L.; Babbitt, Patricia C.

The EBI enzyme portal

NUCLEIC ACIDS RESEARCH

IF13.1

2012-11-21

OAAI

Alcantara, Rafael; Onwubiko, Joseph; Cao, Hong; de Matos, Paula; Cham, Jennifer A.; Jacobsen, Jules; Holliday, Gemma L.; Fischer, Julia D.; Rahman, Syed Asad; Jassal, Bijay; Goujon, Mikael; Rowland, Francis; Velankar, Sameer; Lopez, Rodrigo; Overington, John P.; Kleywegt, Gerard J.; Hermjakob, Henning; O'Donovan, Claire; Martin, Maria Jesus; Thornton, Janet M.; Steinbeck, Christoph

MACiE: exploring the diversity of biochemical reactions

NUCLEIC ACIDS RESEARCH

IF13.1

2011-11-03

OAAI

Holliday, Gemma L.; Andreini, Claudia; Fischer, Julia D.; Rahman, Syed Asad; Almonacid, Daniel E.; Williams, Sophie T.; Pearson, William R.

FunTree: a resource for exploring the functional evolution of structurally defined enzyme superfamilies

NUCLEIC ACIDS RESEARCH

IF13.1

2011-10-17

OAAI

Furnham, Nicholas; Sillitoe, Ian; Holliday, Gemma L.; Cuff, Alison L.; Rahman, Syed A.; Laskowski, Roman A.; Orengo, Christine A.; Thornton, Janet M.

Characterizing the complexity of enzymes on the basis of their mechanisms and structures with a bio-computational analysis 通过生物计算分析根据酶的机制和结构表征酶的复杂性

FEBS JOURNAL

IF4.2

2011-06-13

OAAI

Holliday, Gemma L.; Fischer, Julia D.; Mitchell, John B. O.; Thornton, Janet M.

Small Molecule Subgraph Detector (SMSD) toolkit

JOURNAL OF CHEMINFORMATICS

IF5.7

2009-08-10

125

OAAI

Rahman, Syed Asad; Bashton, Matthew; Holliday, Gemma L.; Schrader, Rainer; Thornton, Janet M.

MACiE (Mechanism, Annotation and Classification in Enzymes): novel tools for searching catalytic mechanisms

NUCLEIC ACIDS RESEARCH

IF13.1

2007-01-03

OAAI

Holliday, Gemma L.; Almonacid, Daniel E.; Bartlett, Gail J.; O'Boyle, Noel M.; Torrance, James W.; Murray-Rust, Peter; Mitchell, John B. O.; Thornton, Janet M.

研究方向