Bertil Schmidt - Publications, H-index & Citations

Bertil Schmidt

johannes gutenberg university

40H指数

334论文数

6.6K被引数

收录论文 58

发表时间

QutRNA2: robust tRNA modification discovery from Nanopore direct tRNA sequencing QutRNA2：基于纳米孔直接tRNA测序的鲁棒性tRNA修饰发现

NAR Genomics and Bioinformatics

IF2.8

2026-07-07

OAAI

Michael Piechotta; Wei Guo; Isabel S Naarmann-de Vries; Felix Kallenborn; Swastik Mishra; Francesca Tuorto; Bertil Schmidt; Christoph Dieterich

Accelerating Molecular Dynamics Simulations on ARM Multi-Core Processors 在ARM多核处理器上加速分子动力学模拟

IEEE Transactions on Parallel and Distributed Systems

IF6

2026-02-03

PREAI

Ran Chen; Huihai An; Zhihua Sa; Ping Gao; Xiaohui Duan; Bertil Schmidt; Yang Yang; Yizhen Chen; Lin Gan; Guangwen Yang; Weiguo Liu

gpuPairHMM: High-Speed Pair-HMM Forward Algorithm for DNA Variant Calling on GPUs gpuPairHMM: 高速配对HMM前向算法，用于GPU上的DNA变异检测

IEEE Transactions on Computational Biology and Bioinformatics

IF0

2026-01-23

PREAI

Bertil Schmidt; Felix Kallenborn; Alexander Wichmann; Alejandro Chacon; Christian Hundt

RabbitTrim: An Efficient and Versatile Trimmer on Multi-Core Platforms

IEEE Transactions on Computational Biology and Bioinformatics

IF0

2025-11-01

PREAI

Wang, Mingkai; Yang, Yang; Yin, Zekun; Yan, Lifeng; Zhang, Tong; Zhu, Fangjin; Li, Xin; Duan, Xiaohui; Schmidt, Bertil; Liu, Weiguo

Improved vapor pressure predictions using group contribution-assisted graph convolutional neural networks (GC2NN)

GEOSCIENTIFIC MODEL DEVELOPMENT

IF4.9

2025-10-15

OAAI

Kruger, Matteo; Galeazzo, Tommaso; Eremets, Ivan; Schmidt, Bertil; Poschl, Ulrich; Shiraiwa, Manabu; Berkemeier, Thomas

GPU-accelerated homology search with MMseqs2 基于MMseqs2的GPU加速同源性搜索

Nature Methods

IF32.1

2025-09-18

OAAI

Felix Kallenborn; Alejandro Chacon; Christian Hundt; Hassan Sirelkhatim; Kieran Didi; Sooyoung Cha; Christian Dallago; Milot Mirdita; Bertil Schmidt; Martin Steinegger

HPC and AI in bioinformatics 生物信息学中的高性能计算和人工智能

Future Generation Computer Systems

IF0

2025-07-16

PREAI

Yanjie Wei; Weiguo Liu; Bertil Schmidt; Quan Zou; Limin Jiang

SWQC: Efficient sequencing data quality control on the next-generation sunway platform

FUTURE GENERATION COMPUTER SYSTEMS-THE INTERNATIONAL JOURNAL OF ESCIENCE

IF6.1

2025-03-01

PREAI

Yan, Lifeng; Yin, Zekun; Zhang, Tong; Zhu, Fangjin; Duan, Xiaohui; Schmidt, Bertil; Liu, Weiguo

From GPUs to AI and quantum: three waves of acceleration in bioinformatics

DRUG DISCOVERY TODAY

IF7.5

2024-06-01

OAAI

Schmidt, Bertil; Hildebrandt, Andreas

Redesign and Accelerate the AIREBO Bond-Order Potential on the New Sunway Supercomputer

IEEE TRANSACTIONS ON PARALLEL AND DISTRIBUTED SYSTEMS

IF6

2023-12-01

PREAI

Gao, Ping; Duan, Xiaohui; Schmidt, Bertil; Wan, Wubing; Guo, Jiaxu; Zhang, Wusheng; Gan, Lin; Fu, Haohuan; Xue, Wei; Liu, Weiguo; Yang, Guangwen

MetaTransformer: deep metagenomic sequencing read classification using self-attention models

genomics proteomics bioinformatics

IF2.8

2023-09-11

OAAI

Wichmann, Alexander; Buschong, Etienne; Mueller, Andre; Juenger, Daniel; Hildebrandt, Andreas; Hankeln, Thomas; Schmidt, Bertil

RabbitQCPlus 2.0: More efficient and versatile quality control for sequencing data

METHODS

IF4.3

2023-08-01

PREAI

Yan, Lifeng; Yin, Zekun; Zhang, Hao; Zhao, Zhan; Wang, Mingkai; Mueller, Andre; Kallenborn, Felix; Wichmann, Alexander; Wei, Yanjie; Niu, Beifang; Schmidt, Bertil; Liu, Weiguo

DeepFilter: A Deep Learning Based Variant Filter for VarDict

TSINGHUA SCIENCE AND TECHNOLOGY

IF3.5

2023-08-01

OAAI

Zhang, Hao; Yin, Zekun; Wei, Yanjie; Schmidt, Bertil; Liu, Weiguo

CUDA-accelerated protein electrostatics in linear space

nature computational science

IF3.7

2023-06-01

PREAI

Kemmer, Thomas; Hack, Sebastian; Schmidt, Bertil; Hildebrandt, Andreas

RabbitTClust: enabling fast clustering analysis of millions of bacteria genomes with MinHash sketches

GENOME BIOLOGY

IF9.4

2023-05-17

OAAI

Xu, Xiaoming; Yin, Zekun; Yan, Lifeng; Zhang, Hao; Xu, Borui; Wei, Yanjie; Niu, Beifang; Schmidt, Bertil; Liu, Weiguo

RabbitFX: Efficient Framework for FASTA/Q File Parsing on Modern Multi-Core Platforms

IEEE-ACM TRANSACTIONS ON COMPUTATIONAL BIOLOGY AND BIOINFORMATICS

IF3.4

2023-05-01

PREAI

Zhang, Hao; Song, Honglei; Xu, Xiaoming; Chang, Qixin; Wang, Mingkai; Wei, Yanjie; Yin, Zekun; Schmidt, Bertil; Liu, Weiguo

Bio-ESMD: A Data Centric Implementation for Large-Scale Biological System Simulation on Sunway TaihuLight Supercomputer

IEEE TRANSACTIONS ON PARALLEL AND DISTRIBUTED SYSTEMS

IF6

2023-03-01

PREAI

Duan, Xiaohui; Shao, Qi; Weng, Junben; Schmidt, Bertil; Gan, Lin; Li, Guohui; Fu, Haohuan; Xue, Wei; Liu, Weiguo; Yang, Guangwen

Redesigning and Optimizing UCSF DOCK3.7 on Sunway TaihuLight

IEEE TRANSACTIONS ON PARALLEL AND DISTRIBUTED SYSTEMS

IF6

2022-12-01

PREAI

Xu, Kai; Zhang, Jinxiao; Duan, Xiaohui; Wan, Xiaobo; Huang, Niu; Schmidt, Bertil; Liu, Weiguo; Yang, Guangwen

Automatic Generation of High-Performance Convolution Kernels on ARM CPUs for Deep Learning

IEEE TRANSACTIONS ON PARALLEL AND DISTRIBUTED SYSTEMS

IF6

2022-11-01

OAAI

Meng, Jintao; Zhuang, Chen; Chen, Peng; Wahib, Mohamed; Schmidt, Bertil; Wang, Xiao; Lan, Haidong; Wu, Dou; Deng, Minwen; Wei, Yanjie; Feng, Shengzhong

General-purpose GPU hashing data structures and their application in accelerated genomics

JOURNAL OF PARALLEL AND DISTRIBUTED COMPUTING

IF4

2022-05-01

PREAI

Juenger, Daniel; Kobus, Robin; Mueller, Andre; Hundt, Christian; Xu, Kai; Liu, Weiguo; Schmidt, Bertil

研究方向